Wall clock time and date at job start Sat Mar 6 2021 20:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47120 * 2 1 4 4 C 1.50703 * 109.47271 * 240.00062 * 2 1 3 5 5 C 1.32774 * 124.71113 * 300.31741 * 4 2 1 6 6 C 1.44423 * 113.08047 * 180.14475 * 5 4 2 7 7 C 1.47192 * 123.45675 * 179.80801 * 6 5 4 8 8 O 1.21634 * 120.00338 * 359.73035 * 7 6 5 9 9 N 1.34777 * 119.99977 * 179.72614 * 7 6 5 10 10 C 1.46501 * 120.00006 * 185.41636 * 9 7 6 11 11 C 1.50697 * 112.90546 * 284.32641 * 10 9 7 12 12 C 1.38243 * 119.99755 * 166.72019 * 11 10 9 13 13 C 1.38223 * 119.99988 * 179.76809 * 12 11 10 14 14 C 1.38241 * 120.00479 * 0.49169 * 13 12 11 15 15 C 1.38238 * 119.99118 * 359.78694 * 14 13 12 16 16 C 1.38230 * 120.00242 * 347.00324 * 11 10 9 17 17 C 1.53780 * 113.61283 * 153.08067 * 10 9 7 18 18 C 1.54054 * 87.07677 * 270.88098 * 17 10 9 19 19 H 1.09004 * 113.61282 * 89.07262 * 18 17 10 20 20 F 1.39900 * 113.69476 * 220.05347 * 18 17 10 21 21 C 1.53779 * 86.98490 * 334.56888 * 18 17 10 22 22 C 1.35998 * 113.08041 * 359.53871 * 6 5 4 23 23 S 1.70451 * 110.81950 * 0.24593 * 22 6 5 24 24 H 0.96700 * 113.99762 * 59.99630 * 1 2 3 25 25 H 1.08995 * 109.46944 * 119.99879 * 2 1 3 26 26 H 1.48501 * 110.00119 * 60.00139 * 3 2 1 27 27 H 1.48506 * 109.99670 * 181.31578 * 3 2 1 28 28 H 1.07996 * 123.45603 * 359.93160 * 5 4 2 29 29 H 0.97006 * 119.99432 * 5.42076 * 9 7 6 30 30 H 1.08006 * 119.99384 * 0.02562 * 12 11 10 31 31 H 1.08001 * 120.00242 * 180.25549 * 13 12 11 32 32 H 1.07992 * 120.00433 * 179.76770 * 14 13 12 33 33 H 1.08004 * 119.99420 * 179.97438 * 15 14 13 34 34 H 1.07994 * 120.00264 * 359.97438 * 16 11 10 35 35 H 1.09003 * 113.61513 * 25.43130 * 17 10 9 36 36 H 1.08993 * 113.61639 * 156.25116 * 17 10 9 37 37 H 1.08997 * 113.61553 * 270.84009 * 21 18 17 38 38 H 1.09000 * 113.61851 * 140.01974 * 21 18 17 39 39 H 1.08004 * 124.59640 * 180.25043 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6640 -1.9746 -1.5358 6 6 2.2769 -2.4002 -2.7723 7 6 2.1337 -3.7574 -3.3239 8 8 1.4750 -4.5893 -2.7292 9 7 2.7323 -4.0782 -4.4881 10 6 2.4940 -5.3891 -5.0973 11 6 3.2368 -6.5019 -4.4038 12 6 2.9144 -7.8194 -4.6708 13 6 3.5989 -8.8402 -4.0383 14 6 4.5989 -8.5436 -3.1311 15 6 4.9173 -7.2261 -2.8598 16 6 4.2363 -6.2052 -3.4963 17 6 2.6598 -5.3971 -6.6261 18 6 1.1668 -5.0270 -6.7109 19 1 0.9818 -3.9528 -6.6979 20 9 0.4818 -5.6852 -7.7379 21 6 1.0062 -5.6963 -5.3357 22 6 2.9950 -1.4167 -3.3776 23 16 2.9441 0.0209 -2.4632 24 1 -0.3933 0.4418 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5615 2.4679 1.2085 27 1 3.5347 1.7702 -0.0320 28 1 1.0539 -2.6194 -0.9207 29 1 3.3209 -3.4412 -4.9224 30 1 2.1306 -8.0511 -5.3768 31 1 3.3499 -9.8696 -4.2500 32 1 5.1311 -9.3411 -2.6341 33 1 5.6983 -6.9943 -2.1507 34 1 4.4853 -5.1759 -3.2845 35 1 3.3248 -4.6173 -6.9973 36 1 2.8911 -6.3806 -7.0351 37 1 0.7840 -6.7619 -5.3921 38 1 0.3364 -5.1593 -4.6642 39 1 3.5257 -1.5309 -4.3113 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12905100_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:42:13 Heat of formation + Delta-G solvation = -18.477783 kcal Electronic energy + Delta-G solvation = -26094.823547 eV Core-core repulsion = 22204.161187 eV Total energy + Delta-G solvation = -3890.662360 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.56399 -42.01209 -40.12622 -38.98330 -38.35242 -37.07914 -34.47399 -32.10260 -31.77431 -31.45643 -27.23984 -27.05943 -26.60246 -25.14585 -23.52497 -22.60678 -22.15759 -20.67891 -20.39497 -19.04585 -18.58016 -18.13057 -17.70635 -17.35643 -16.85065 -16.57885 -16.38701 -15.99535 -15.82746 -15.70957 -15.59369 -15.35783 -15.00797 -14.48363 -14.33304 -14.19232 -14.05763 -13.89007 -13.77064 -13.61617 -13.58299 -13.27296 -12.73279 -12.57878 -12.30751 -12.29302 -11.98497 -11.91201 -11.75628 -11.48704 -10.91291 -10.67984 -10.31324 -10.08001 -9.79726 -9.61132 -9.57167 -5.25722 -0.45189 0.25314 0.40925 0.52454 0.60874 0.83570 1.12362 1.49379 1.80530 1.85673 2.26481 2.74522 3.07906 3.19795 3.25516 3.39700 3.44895 3.53310 3.66925 3.75134 3.86134 4.03490 4.07291 4.14911 4.20235 4.24498 4.34624 4.44182 4.50074 4.51834 4.61587 4.62691 4.68765 4.87551 4.95693 4.99265 5.05424 5.14437 5.15072 5.32536 5.57187 5.64724 5.70548 6.08999 6.30000 6.41518 7.11508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.026 4.026 3 Si 0.653 3.347 4 C -0.243 4.243 5 C -0.053 4.053 6 C -0.156 4.156 7 C 0.580 3.420 8 O -0.512 6.512 9 N -0.711 5.711 10 C 0.197 3.803 11 C -0.075 4.075 12 C -0.111 4.111 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.101 4.101 17 C -0.151 4.151 18 C 0.066 3.934 19 H 0.111 0.889 20 F -0.202 7.202 21 C -0.155 4.155 22 C -0.207 4.207 23 S 0.199 5.801 24 H 0.381 0.619 25 H 0.124 0.876 26 H -0.232 1.232 27 H -0.236 1.236 28 H 0.157 0.843 29 H 0.403 0.597 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 4.500 -3.192 6.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.139 4.139 3 Si 0.553 3.447 4 C -0.360 4.360 5 C -0.082 4.082 6 C -0.174 4.174 7 C 0.366 3.634 8 O -0.387 6.387 9 N -0.364 5.364 10 C 0.110 3.890 11 C -0.076 4.076 12 C -0.129 4.129 13 C -0.134 4.134 14 C -0.137 4.137 15 C -0.137 4.137 16 C -0.119 4.119 17 C -0.189 4.189 18 C 0.030 3.970 19 H 0.128 0.872 20 F -0.183 7.183 21 C -0.193 4.193 22 C -0.346 4.346 23 S 0.466 5.534 24 H 0.229 0.771 25 H 0.141 0.859 26 H -0.155 1.155 27 H -0.160 1.160 28 H 0.174 0.826 29 H 0.239 0.761 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.666 5.640 -1.991 7.015 hybrid contribution -0.128 -1.799 -0.008 1.804 sum 3.538 3.841 -1.999 5.591 Atomic orbital electron populations 1.86548 1.16501 1.81649 1.49145 1.24449 0.85310 1.09063 0.95103 0.95122 0.82059 0.77488 0.90074 1.24817 1.08493 0.99232 1.03439 1.21038 0.98126 0.94372 0.94631 1.20221 1.04558 0.94541 0.98096 1.17595 0.79219 0.86554 0.80011 1.90858 1.39593 1.49823 1.58476 1.45507 1.50244 1.16384 1.24288 1.19602 0.95676 0.82040 0.91660 1.19595 0.96680 0.93384 0.97931 1.20940 0.99810 0.91785 1.00376 1.21140 0.96184 0.99233 0.96862 1.21211 0.97775 0.96616 0.98066 1.21156 0.99889 0.92922 0.99692 1.20869 0.95732 0.99162 0.96161 1.24044 0.96659 1.05066 0.93117 1.23162 0.91435 0.97234 0.85146 0.87177 1.92832 1.81283 1.82817 1.61322 1.24036 0.95829 1.03616 0.95805 1.25802 1.04484 0.99033 1.05231 1.83130 1.46752 1.11308 1.12230 0.77134 0.85862 1.15464 1.16028 0.82575 0.76124 0.85816 0.85747 0.85955 0.86085 0.86634 0.89243 0.86876 0.87351 0.88640 0.81144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.15 12.85 -35.23 -0.45 -0.30 16 2 C -0.03 0.03 2.95 36.01 0.11 0.13 16 3 Si 0.65 -1.29 30.91 -169.99 -5.25 -6.54 16 4 C -0.24 0.18 5.69 -36.18 -0.21 -0.03 16 5 C -0.05 -0.05 9.91 -39.02 -0.39 -0.44 16 6 C -0.16 -0.02 5.98 -104.63 -0.63 -0.65 16 7 C 0.58 0.88 6.68 -12.62 -0.08 0.80 16 8 O -0.51 -2.81 15.19 5.25 0.08 -2.73 16 9 N -0.71 0.90 4.01 -49.06 -0.20 0.71 16 10 C 0.20 -0.05 0.95 -132.16 -0.13 -0.18 16 11 C -0.07 -0.12 4.99 -104.62 -0.52 -0.64 16 12 C -0.11 -0.15 8.71 -39.58 -0.34 -0.50 16 13 C -0.12 -0.15 10.05 -39.59 -0.40 -0.55 16 14 C -0.12 -0.18 10.05 -39.58 -0.40 -0.57 16 15 C -0.12 -0.21 10.05 -39.58 -0.40 -0.61 16 16 C -0.10 -0.20 9.15 -39.58 -0.36 -0.56 16 17 C -0.15 0.29 7.22 -25.78 -0.19 0.10 16 18 C 0.07 -0.04 5.59 -25.78 -0.14 -0.18 16 19 H 0.11 -0.23 8.14 -51.93 -0.42 -0.65 16 20 F -0.20 -0.44 17.41 2.25 0.04 -0.40 16 21 C -0.15 -0.10 6.57 -25.92 -0.17 -0.27 16 22 C -0.21 0.52 10.38 29.93 0.31 0.83 16 23 S 0.20 -0.50 20.18 -107.50 -2.17 -2.67 16 24 H 0.38 -1.60 8.70 45.56 0.40 -1.21 16 25 H 0.12 -0.07 7.96 -51.93 -0.41 -0.49 16 26 H -0.23 -0.22 7.11 56.52 0.40 0.18 16 27 H -0.24 0.04 7.11 56.52 0.40 0.44 16 28 H 0.16 0.34 8.06 -52.49 -0.42 -0.08 16 29 H 0.40 -1.71 7.27 -40.82 -0.30 -2.00 16 30 H 0.12 -0.01 6.54 -52.48 -0.34 -0.36 16 31 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 32 H 0.12 -0.03 8.06 -52.49 -0.42 -0.46 16 33 H 0.12 0.03 8.06 -52.48 -0.42 -0.39 16 34 H 0.12 0.14 6.96 -52.49 -0.37 -0.23 16 35 H 0.09 -0.34 8.13 -51.93 -0.42 -0.76 16 36 H 0.11 -0.19 7.79 -51.93 -0.40 -0.59 16 37 H 0.11 0.07 6.21 -51.93 -0.32 -0.25 16 38 H 0.10 0.23 6.71 -51.93 -0.35 -0.12 16 39 H 0.17 -0.95 7.02 -52.48 -0.37 -1.31 16 LS Contribution 343.31 15.07 5.17 5.17 Total: 0.00 -7.94 343.31 -10.91 -18.85 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -4.20 Total: -8.77 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.93 Total: -3.32 kcal Atomic # 7 Polarization: 0.90 SS G_CDS: -0.20 Total: 0.71 kcal Atomic # 8 Polarization: -2.66 SS G_CDS: -0.37 Total: -3.03 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.04 Total: -0.40 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -5.25 Total: -6.54 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -2.17 Total: -2.67 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -7.94 -10.91 -18.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.377 kcal (2) G-P(sol) polarization free energy of solvation -7.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds