Wall clock time and date at job start Sat Mar 6 2021 20:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47120 * 2 1 4 4 C 1.50703 * 109.47271 * 240.00062 * 2 1 3 5 5 C 1.32774 * 124.71113 * 300.31741 * 4 2 1 6 6 C 1.44423 * 113.08047 * 180.14475 * 5 4 2 7 7 C 1.47192 * 123.45675 * 179.80801 * 6 5 4 8 8 O 1.21634 * 120.00338 * 359.73035 * 7 6 5 9 9 N 1.34777 * 119.99977 * 179.72614 * 7 6 5 10 10 C 1.46501 * 120.00006 * 185.41636 * 9 7 6 11 11 C 1.50697 * 112.90546 * 284.32641 * 10 9 7 12 12 C 1.38243 * 119.99755 * 166.72019 * 11 10 9 13 13 C 1.38223 * 119.99988 * 179.76809 * 12 11 10 14 14 C 1.38241 * 120.00479 * 0.49169 * 13 12 11 15 15 C 1.38238 * 119.99118 * 359.78694 * 14 13 12 16 16 C 1.38230 * 120.00242 * 347.00324 * 11 10 9 17 17 C 1.53780 * 113.61283 * 153.08067 * 10 9 7 18 18 C 1.54054 * 87.07677 * 270.88098 * 17 10 9 19 19 H 1.09004 * 113.61282 * 89.07262 * 18 17 10 20 20 F 1.39900 * 113.69476 * 220.05347 * 18 17 10 21 21 C 1.53779 * 86.98490 * 334.56888 * 18 17 10 22 22 C 1.35998 * 113.08041 * 359.53871 * 6 5 4 23 23 S 1.70451 * 110.81950 * 0.24593 * 22 6 5 24 24 H 0.96700 * 113.99762 * 59.99630 * 1 2 3 25 25 H 1.08995 * 109.46944 * 119.99879 * 2 1 3 26 26 H 1.48501 * 110.00119 * 60.00139 * 3 2 1 27 27 H 1.48506 * 109.99670 * 181.31578 * 3 2 1 28 28 H 1.07996 * 123.45603 * 359.93160 * 5 4 2 29 29 H 0.97006 * 119.99432 * 5.42076 * 9 7 6 30 30 H 1.08006 * 119.99384 * 0.02562 * 12 11 10 31 31 H 1.08001 * 120.00242 * 180.25549 * 13 12 11 32 32 H 1.07992 * 120.00433 * 179.76770 * 14 13 12 33 33 H 1.08004 * 119.99420 * 179.97438 * 15 14 13 34 34 H 1.07994 * 120.00264 * 359.97438 * 16 11 10 35 35 H 1.09003 * 113.61513 * 25.43130 * 17 10 9 36 36 H 1.08993 * 113.61639 * 156.25116 * 17 10 9 37 37 H 1.08997 * 113.61553 * 270.84009 * 21 18 17 38 38 H 1.09000 * 113.61851 * 140.01974 * 21 18 17 39 39 H 1.08004 * 124.59640 * 180.25043 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6640 -1.9746 -1.5358 6 6 2.2769 -2.4002 -2.7723 7 6 2.1337 -3.7574 -3.3239 8 8 1.4750 -4.5893 -2.7292 9 7 2.7323 -4.0782 -4.4881 10 6 2.4940 -5.3891 -5.0973 11 6 3.2368 -6.5019 -4.4038 12 6 2.9144 -7.8194 -4.6708 13 6 3.5989 -8.8402 -4.0383 14 6 4.5989 -8.5436 -3.1311 15 6 4.9173 -7.2261 -2.8598 16 6 4.2363 -6.2052 -3.4963 17 6 2.6598 -5.3971 -6.6261 18 6 1.1668 -5.0270 -6.7109 19 1 0.9818 -3.9528 -6.6979 20 9 0.4818 -5.6852 -7.7379 21 6 1.0062 -5.6963 -5.3357 22 6 2.9950 -1.4167 -3.3776 23 16 2.9441 0.0209 -2.4632 24 1 -0.3933 0.4418 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5615 2.4679 1.2085 27 1 3.5347 1.7702 -0.0320 28 1 1.0539 -2.6194 -0.9207 29 1 3.3209 -3.4412 -4.9224 30 1 2.1306 -8.0511 -5.3768 31 1 3.3499 -9.8696 -4.2500 32 1 5.1311 -9.3411 -2.6341 33 1 5.6983 -6.9943 -2.1507 34 1 4.4853 -5.1759 -3.2845 35 1 3.3248 -4.6173 -6.9973 36 1 2.8911 -6.3806 -7.0351 37 1 0.7840 -6.7619 -5.3921 38 1 0.3364 -5.1593 -4.6642 39 1 3.5257 -1.5309 -4.3113 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:42:13 Heat of formation + Delta-G solvation = -15.186520 kcal Electronic energy + Delta-G solvation = -26094.680827 eV Core-core repulsion = 22204.161187 eV Total energy + Delta-G solvation = -3890.519640 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.083 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.63395 -42.03420 -40.15975 -38.97007 -38.37462 -37.06788 -34.50667 -32.12068 -31.82718 -31.43319 -27.20418 -26.98950 -26.58626 -25.13373 -23.58470 -22.63693 -22.14623 -20.63287 -20.42167 -18.95739 -18.61103 -18.08645 -17.66133 -17.34643 -16.85377 -16.61224 -16.36010 -16.02432 -15.89126 -15.77274 -15.63242 -15.33193 -14.98669 -14.47957 -14.38608 -14.14709 -14.07467 -13.95809 -13.70669 -13.60793 -13.49360 -13.32919 -12.65190 -12.59083 -12.32395 -12.30466 -11.99598 -11.91453 -11.75085 -11.46032 -11.00108 -10.61635 -10.35425 -9.99032 -9.89087 -9.66178 -9.45327 -5.13427 -0.34028 0.33189 0.38563 0.42981 0.69468 0.81784 1.22185 1.59203 1.87238 1.91941 2.23576 2.69578 3.14071 3.21480 3.37703 3.40173 3.51003 3.65813 3.76915 3.83893 3.96538 4.02722 4.03422 4.15499 4.20954 4.27988 4.40614 4.48242 4.55371 4.57248 4.64405 4.67880 4.71270 4.82368 4.96567 4.99530 5.02561 5.10979 5.15746 5.31890 5.49622 5.56192 5.64531 6.02859 6.39988 6.67764 7.12218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.039 4.039 3 Si 0.739 3.261 4 C -0.250 4.250 5 C -0.075 4.075 6 C -0.182 4.182 7 C 0.581 3.419 8 O -0.564 6.564 9 N -0.694 5.694 10 C 0.197 3.803 11 C -0.083 4.083 12 C -0.123 4.123 13 C -0.126 4.126 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.068 3.932 19 H 0.129 0.871 20 F -0.218 7.218 21 C -0.162 4.162 22 C -0.188 4.188 23 S 0.252 5.748 24 H 0.397 0.603 25 H 0.112 0.888 26 H -0.275 1.275 27 H -0.253 1.253 28 H 0.129 0.871 29 H 0.420 0.580 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 6.003 -4.941 8.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.150 4.150 3 Si 0.641 3.359 4 C -0.366 4.366 5 C -0.104 4.104 6 C -0.200 4.200 7 C 0.369 3.631 8 O -0.443 6.443 9 N -0.347 5.347 10 C 0.110 3.890 11 C -0.084 4.084 12 C -0.141 4.141 13 C -0.144 4.144 14 C -0.149 4.149 15 C -0.150 4.150 16 C -0.134 4.134 17 C -0.174 4.174 18 C 0.032 3.968 19 H 0.147 0.853 20 F -0.199 7.199 21 C -0.201 4.201 22 C -0.327 4.327 23 S 0.518 5.482 24 H 0.247 0.753 25 H 0.129 0.871 26 H -0.200 1.200 27 H -0.178 1.178 28 H 0.147 0.853 29 H 0.259 0.741 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.131 7.146 -3.787 9.578 hybrid contribution -0.596 -2.243 0.602 2.397 sum 4.535 4.903 -3.186 7.400 Atomic orbital electron populations 1.86505 1.17026 1.82207 1.50383 1.24694 0.85174 1.10319 0.94840 0.94182 0.79484 0.74349 0.87885 1.24886 1.08751 0.98922 1.04091 1.20947 0.99085 0.94949 0.95451 1.20035 1.06729 0.94614 0.98586 1.17835 0.78468 0.86674 0.80157 1.90831 1.42027 1.51350 1.60063 1.45328 1.49715 1.16315 1.23389 1.19587 0.94695 0.81967 0.92746 1.19825 0.96606 0.94049 0.97920 1.21165 1.00162 0.92000 1.00801 1.21422 0.96116 1.00102 0.96763 1.21467 0.98086 0.97018 0.98316 1.21408 1.00363 0.93219 1.00042 1.21035 0.96232 0.99531 0.96578 1.23986 0.96080 1.06067 0.91274 1.23332 0.92128 0.97799 0.83562 0.85343 1.92798 1.81818 1.83303 1.61963 1.24038 0.96244 1.03218 0.96585 1.26207 1.02505 0.98126 1.05828 1.82970 1.44752 1.10089 1.10347 0.75303 0.87069 1.20048 1.17810 0.85329 0.74086 0.84889 0.84270 0.84538 0.85020 0.86186 0.86334 0.86948 0.87961 0.90812 0.77567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.36 12.85 -148.98 -1.91 -2.27 16 2 C -0.04 0.04 2.95 71.24 0.21 0.25 16 3 Si 0.74 -3.09 30.91 68.60 2.12 -0.97 16 4 C -0.25 0.26 5.69 24.51 0.14 0.40 16 5 C -0.07 -0.27 9.91 22.67 0.22 -0.05 16 6 C -0.18 -0.11 5.98 -19.87 -0.12 -0.23 16 7 C 0.58 2.37 6.68 86.60 0.58 2.95 16 8 O -0.56 -7.74 15.19 -4.14 -0.06 -7.81 16 9 N -0.69 2.06 4.01 -427.37 -1.71 0.35 16 10 C 0.20 -0.08 0.95 3.38 0.00 -0.08 16 11 C -0.08 -0.31 4.99 -19.87 -0.10 -0.41 16 12 C -0.12 -0.45 8.71 22.27 0.19 -0.26 16 13 C -0.13 -0.42 10.05 22.27 0.22 -0.20 16 14 C -0.13 -0.47 10.05 22.27 0.22 -0.25 16 15 C -0.13 -0.58 10.05 22.27 0.22 -0.36 16 16 C -0.12 -0.54 9.15 22.27 0.20 -0.34 16 17 C -0.14 0.68 7.22 31.21 0.23 0.91 16 18 C 0.07 -0.11 5.59 31.21 0.17 0.06 16 19 H 0.13 -0.70 8.14 -2.38 -0.02 -0.72 16 20 F -0.22 -0.95 17.41 44.97 0.78 -0.16 16 21 C -0.16 -0.41 6.57 31.12 0.20 -0.21 16 22 C -0.19 1.31 10.38 67.30 0.70 2.01 16 23 S 0.25 -1.75 20.18 -56.49 -1.14 -2.89 16 24 H 0.40 -3.11 8.70 -74.06 -0.64 -3.75 16 25 H 0.11 0.08 7.96 -2.39 -0.02 0.06 16 26 H -0.27 -0.80 7.11 99.48 0.71 -0.09 16 27 H -0.25 0.36 7.11 99.48 0.71 1.06 16 28 H 0.13 1.08 8.06 -2.91 -0.02 1.06 16 29 H 0.42 -4.44 7.27 -92.70 -0.67 -5.12 16 30 H 0.13 0.11 6.54 -2.91 -0.02 0.09 16 31 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 32 H 0.14 -0.03 8.06 -2.91 -0.02 -0.06 16 33 H 0.13 0.15 8.06 -2.91 -0.02 0.12 16 34 H 0.12 0.33 6.96 -2.91 -0.02 0.31 16 35 H 0.12 -1.26 8.13 -2.39 -0.02 -1.28 16 36 H 0.11 -0.48 7.79 -2.39 -0.02 -0.50 16 37 H 0.10 0.32 6.21 -2.39 -0.01 0.31 16 38 H 0.07 0.53 6.71 -2.39 -0.02 0.51 16 39 H 0.21 -3.10 7.02 -2.91 -0.02 -3.12 16 Total: 0.00 -21.98 343.31 1.22 -20.76 By element: Atomic # 1 Polarization: -11.05 SS G_CDS: -0.16 Total: -11.21 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 3.31 Total: 4.21 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -1.71 Total: 0.35 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -1.98 Total: -10.08 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.78 Total: -0.16 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.12 Total: -0.97 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -1.14 Total: -2.89 kcal Total: -21.98 1.22 -20.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.571 kcal (2) G-P(sol) polarization free energy of solvation -21.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds