Wall clock time and date at job start Sat Mar 6 2021 20:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 113.99915 * 2 1 4 4 C 1.53004 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.91056 * 43.74677 * 4 3 2 6 6 C 1.53783 * 113.61192 * 174.99823 * 4 3 2 7 7 C 1.53782 * 87.07875 * 139.98279 * 6 4 3 8 8 H 1.08998 * 113.61586 * 89.11815 * 7 6 4 9 9 N 1.46509 * 113.61257 * 220.01717 * 7 6 4 10 10 C 1.34774 * 120.00078 * 204.99955 * 9 7 6 11 11 O 1.21695 * 119.99806 * 354.47869 * 10 9 7 12 12 C 1.46669 * 120.00274 * 174.47979 * 10 9 7 13 13 C 1.37877 * 126.23127 * 4.80019 * 12 10 9 14 14 C 1.39835 * 107.08522 * 179.97438 * 13 12 10 15 15 C 1.50700 * 126.06572 * 180.02562 * 14 13 12 16 16 O 1.42900 * 109.47317 * 299.99847 * 15 14 13 17 17 Si 1.86307 * 109.46915 * 180.02562 * 15 14 13 18 18 C 1.35448 * 107.86548 * 0.02562 * 14 13 12 19 19 N 1.35538 * 108.87109 * 359.76161 * 18 14 13 20 20 C 1.46506 * 125.67640 * 180.26332 * 19 18 14 21 21 C 1.53774 * 87.08178 * 334.56469 * 7 6 4 22 22 H 1.09007 * 109.47587 * 300.00397 * 1 2 3 23 23 H 1.09002 * 109.47318 * 60.00449 * 1 2 3 24 24 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47433 * 59.99619 * 3 2 1 26 26 H 1.09005 * 109.47270 * 299.99617 * 3 2 1 27 27 H 1.09000 * 113.61964 * 25.43289 * 6 4 3 28 28 H 1.09003 * 113.61385 * 254.52378 * 6 4 3 29 29 H 0.96996 * 119.99628 * 24.99808 * 9 7 6 30 30 H 1.08005 * 126.45578 * 0.02562 * 13 12 10 31 31 H 1.08999 * 109.47292 * 60.00128 * 15 14 13 32 32 H 0.96699 * 114.00190 * 300.00479 * 16 15 14 33 33 H 1.48490 * 109.99861 * 58.68233 * 17 15 14 34 34 H 1.48501 * 109.99842 * 180.02562 * 17 15 14 35 35 H 1.08000 * 125.56520 * 180.02562 * 18 14 13 36 36 H 1.08995 * 109.47135 * 272.11175 * 20 19 18 37 37 H 1.08998 * 109.47115 * 32.11734 * 20 19 18 38 38 H 1.09002 * 109.46580 * 152.11363 * 20 19 18 39 39 H 1.09003 * 113.61559 * 139.98442 * 21 7 6 40 40 H 1.09006 * 113.61610 * 270.80192 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9014 0.4279 -0.6933 6 6 4.2603 2.5353 -0.1222 7 6 5.2671 1.9995 0.9095 8 1 6.1065 1.4657 0.4640 9 7 5.6857 2.9994 1.8951 10 6 6.8745 2.8754 2.5177 11 8 7.5553 1.8830 2.3373 12 6 7.3479 3.9366 3.4127 13 6 6.6466 5.0651 3.7811 14 6 7.4703 5.7983 4.6409 15 6 7.1240 7.1100 5.2971 16 8 6.8538 8.0889 4.2917 17 14 8.5557 7.6768 6.3458 18 6 8.6348 5.1204 4.7792 19 7 8.5712 3.9849 4.0419 20 6 9.6294 2.9777 3.9311 21 6 4.1441 1.0751 1.4086 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6885 1.8464 0.8899 26 1 1.6886 1.8464 -0.8901 27 1 3.6736 3.3802 0.2383 28 1 4.6950 2.7097 -1.1065 29 1 5.1071 3.7507 2.0995 30 1 5.6487 5.3320 3.4657 31 1 6.2422 6.9807 5.9246 32 1 7.5964 8.2555 3.6952 33 1 9.7718 7.8264 5.5070 34 1 8.2265 8.9692 6.9990 35 1 9.4750 5.4315 5.3822 36 1 10.3063 3.2495 3.1212 37 1 10.1844 2.9293 4.8679 38 1 9.1844 2.0049 3.7217 39 1 4.4847 0.0707 1.6601 40 1 3.5264 1.5203 2.1887 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_10803934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:46:53 Heat of formation + Delta-G solvation = -35.316667 kcal Electronic energy + Delta-G solvation = -21866.013220 eV Core-core repulsion = 18456.407381 eV Total energy + Delta-G solvation = -3409.605839 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.56341 -41.00067 -39.52187 -38.20013 -37.79375 -34.97563 -33.73564 -31.09625 -29.48956 -28.30203 -26.97161 -26.63937 -25.74314 -24.51455 -22.63037 -21.29998 -20.98832 -20.17435 -18.83193 -17.85820 -17.61289 -17.16147 -16.87924 -16.81138 -16.61935 -16.05630 -15.92148 -15.75205 -15.38226 -15.30432 -14.93637 -14.46441 -14.00360 -13.98927 -13.51472 -13.46475 -13.27268 -13.16880 -13.15259 -12.96328 -12.45130 -12.38987 -12.07274 -11.79603 -11.67043 -11.42057 -11.12896 -10.59481 -10.47300 -10.16396 -9.69616 -9.26811 -4.85481 0.38763 1.37858 1.57536 1.59405 1.69049 2.04467 2.25503 2.31691 2.81990 3.43807 3.54560 3.59090 3.69951 3.80100 3.84616 3.89018 4.03614 4.23372 4.31271 4.35964 4.38305 4.40200 4.48204 4.53034 4.59339 4.69704 4.71743 4.74033 4.77021 4.79892 4.80359 4.85186 5.00162 5.04535 5.17621 5.24861 5.50887 5.67995 5.88301 6.16246 6.23881 6.45453 6.61901 7.09757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.069 3.931 4 C -0.105 4.105 5 H 0.095 0.905 6 C -0.121 4.121 7 C 0.122 3.878 8 H 0.098 0.902 9 N -0.696 5.696 10 C 0.586 3.414 11 O -0.585 6.585 12 C -0.080 4.080 13 C -0.111 4.111 14 C -0.216 4.216 15 C -0.044 4.044 16 O -0.551 6.551 17 Si 0.767 3.233 18 C 0.035 3.965 19 N -0.413 5.413 20 C 0.059 3.941 21 C -0.142 4.142 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.416 0.584 30 H 0.158 0.842 31 H 0.119 0.881 32 H 0.384 0.616 33 H -0.281 1.281 34 H -0.308 1.308 35 H 0.200 0.800 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 1.704 1.291 2.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.007 4.007 4 C -0.124 4.124 5 H 0.113 0.887 6 C -0.159 4.159 7 C 0.017 3.983 8 H 0.116 0.884 9 N -0.346 5.346 10 C 0.375 3.625 11 O -0.467 6.467 12 C -0.192 4.192 13 C -0.137 4.137 14 C -0.223 4.223 15 C -0.154 4.154 16 O -0.359 6.359 17 Si 0.672 3.328 18 C -0.102 4.102 19 N -0.085 5.085 20 C -0.081 4.081 21 C -0.181 4.181 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.108 0.892 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.253 0.747 30 H 0.175 0.825 31 H 0.137 0.863 32 H 0.233 0.767 33 H -0.207 1.207 34 H -0.237 1.237 35 H 0.217 0.783 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.068 1.157 1.508 1.902 hybrid contribution -0.415 0.759 -1.110 1.407 sum -0.483 1.916 0.399 2.016 Atomic orbital electron populations 1.22885 0.79803 1.03551 1.00816 1.87857 1.21132 1.29249 1.95598 1.22628 0.92572 0.84309 1.01185 1.22290 0.93324 0.98935 0.97854 0.88696 1.23313 0.95924 0.96978 0.99643 1.22508 0.96018 0.90202 0.89595 0.88356 1.45559 1.18673 1.28832 1.41576 1.17272 0.81551 0.84499 0.79151 1.90767 1.57802 1.32562 1.65548 1.20079 0.90079 1.00705 1.08373 1.21414 1.00191 0.92513 0.99570 1.19836 0.95597 1.00176 1.06657 1.24487 1.11202 0.85247 0.94468 1.86550 1.43255 1.60098 1.45984 0.94354 0.73934 0.82769 0.81702 1.22330 1.00808 0.87501 0.99598 1.44037 1.12597 1.18007 1.33821 1.22462 0.89192 0.91351 1.05134 1.23521 0.97254 0.99992 0.97358 0.93242 0.93143 0.89182 0.92132 0.92005 0.87299 0.89365 0.74672 0.82464 0.86284 0.76735 1.20715 1.23655 0.78338 0.90137 0.86673 0.89492 0.92348 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.80 10.70 -148.98 -1.59 -3.39 16 3 C 0.07 -0.07 5.78 71.98 0.42 0.34 16 4 C -0.11 0.13 4.01 -10.27 -0.04 0.09 16 5 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 6 C -0.12 0.56 7.39 31.12 0.23 0.79 16 7 C 0.12 0.04 4.20 45.51 0.19 0.24 16 8 H 0.10 0.45 7.54 -2.39 -0.02 0.43 16 9 N -0.70 -0.25 5.34 -444.00 -2.37 -2.62 16 10 C 0.59 3.85 7.77 86.44 0.67 4.53 16 11 O -0.58 -7.73 14.25 -4.33 -0.06 -7.79 16 12 C -0.08 -0.33 6.89 40.35 0.28 -0.05 16 13 C -0.11 -0.12 10.29 22.57 0.23 0.12 16 14 C -0.22 0.07 5.44 -20.12 -0.11 -0.04 16 15 C -0.04 0.07 3.02 71.24 0.22 0.28 16 16 O -0.55 -1.00 12.88 -148.98 -1.92 -2.92 16 17 Si 0.77 -2.59 30.59 68.60 2.10 -0.50 16 18 C 0.03 -0.06 9.94 83.48 0.83 0.77 16 19 N -0.41 -0.83 3.16 -534.31 -1.69 -2.52 16 20 C 0.06 -0.05 10.69 127.77 1.37 1.31 16 21 C -0.14 -0.09 7.43 31.12 0.23 0.14 16 22 H 0.05 -0.14 8.14 -2.38 -0.02 -0.16 16 23 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 24 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.06 -0.19 7.84 -2.39 -0.02 -0.21 16 26 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 27 H 0.11 -0.89 8.08 -2.39 -0.02 -0.91 16 28 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.42 -2.04 7.63 -92.71 -0.71 -2.74 16 30 H 0.16 -0.42 7.45 -2.91 -0.02 -0.44 16 31 H 0.12 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.38 -1.28 8.70 -74.06 -0.64 -1.92 16 33 H -0.28 -0.02 7.11 99.48 0.71 0.69 16 34 H -0.31 -1.58 7.11 99.48 0.71 -0.87 16 35 H 0.20 -1.61 6.19 -2.91 -0.02 -1.63 16 36 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.11 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.09 0.36 6.12 -2.39 -0.01 0.34 16 39 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.09 -0.07 7.90 -2.38 -0.02 -0.09 16 Total: 0.00 -19.65 333.67 -0.04 -19.69 By element: Atomic # 1 Polarization: -9.43 SS G_CDS: -0.26 Total: -9.69 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 5.76 Total: 9.75 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -4.06 Total: -5.15 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -3.57 Total: -14.11 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.10 Total: -0.50 kcal Total: -19.65 -0.04 -19.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_10803934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.625 kcal (2) G-P(sol) polarization free energy of solvation -19.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds