Wall clock time and date at job start Sat Mar 6 2021 20:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00054 * 2 1 4 4 C 1.52998 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84968 * 43.80421 * 4 3 2 6 6 C 1.53784 * 113.61524 * 175.00216 * 4 3 2 7 7 C 1.53783 * 87.08081 * 140.06425 * 6 4 3 8 8 H 1.08992 * 113.61755 * 89.19695 * 7 6 4 9 9 N 1.46501 * 113.61417 * 220.01854 * 7 6 4 10 10 C 1.34769 * 120.00354 * 203.46915 * 9 7 6 11 11 O 1.21704 * 119.99707 * 5.08214 * 10 9 7 12 12 C 1.46675 * 120.00342 * 185.08231 * 10 9 7 13 13 C 1.37870 * 126.23612 * 5.51011 * 12 10 9 14 14 C 1.39834 * 107.08925 * 180.11468 * 13 12 10 15 15 C 1.35452 * 107.86185 * 359.57712 * 14 13 12 16 16 C 1.50696 * 125.56012 * 180.23970 * 15 14 13 17 17 O 1.42906 * 109.46938 * 150.02565 * 16 15 14 18 18 Si 1.86302 * 109.47489 * 30.02403 * 16 15 14 19 19 N 1.35529 * 108.87566 * 0.25931 * 15 14 13 20 20 C 1.46498 * 125.68028 * 179.97438 * 19 15 14 21 21 C 1.53784 * 87.17262 * 334.60674 * 7 6 4 22 22 H 1.09003 * 109.47282 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47216 * 299.99959 * 1 2 3 24 24 H 1.09000 * 109.47324 * 59.99810 * 1 2 3 25 25 H 1.09002 * 109.47343 * 60.00162 * 3 2 1 26 26 H 1.09003 * 109.47585 * 300.00542 * 3 2 1 27 27 H 1.08998 * 113.61577 * 25.51456 * 6 4 3 28 28 H 1.09001 * 113.61306 * 254.61057 * 6 4 3 29 29 H 0.97005 * 119.99986 * 23.46640 * 9 7 6 30 30 H 1.08009 * 126.45146 * 359.95185 * 13 12 10 31 31 H 1.07998 * 126.06906 * 179.83269 * 14 13 12 32 32 H 1.09003 * 109.47396 * 270.02145 * 16 15 14 33 33 H 0.96701 * 114.00093 * 180.02562 * 17 16 15 34 34 H 1.48500 * 109.99841 * 59.99633 * 18 16 15 35 35 H 1.48495 * 110.00286 * 181.31383 * 18 16 15 36 36 H 1.09000 * 109.46995 * 85.41824 * 20 19 15 37 37 H 1.09003 * 109.46840 * 205.41915 * 20 19 15 38 38 H 1.08999 * 109.46837 * 325.41671 * 20 19 15 39 39 H 1.08999 * 113.61385 * 139.93725 * 21 7 6 40 40 H 1.08993 * 113.61585 * 270.84607 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8998 0.4287 -0.6962 6 6 4.2603 2.5353 -0.1234 7 6 5.2691 1.9983 0.9055 8 1 6.1082 1.4661 0.4577 9 7 5.6898 2.9971 1.8913 10 6 6.8660 2.8559 2.5339 11 8 7.6206 1.9507 2.2299 12 6 7.2367 3.7930 3.5996 13 6 6.4417 4.7927 4.1187 14 6 7.1893 5.4409 5.1067 15 6 8.3977 4.8332 5.1791 16 6 9.5138 5.2111 6.1184 17 8 10.2861 4.0502 6.4319 18 14 8.7948 5.9201 7.6840 19 7 8.4392 3.8302 4.2686 20 6 9.5751 2.9350 4.0346 21 6 4.1488 1.0718 1.4069 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.6744 3.3799 0.2392 28 1 4.6928 2.7108 -1.1085 29 1 5.1218 3.7601 2.0815 30 1 5.4326 5.0320 3.8169 31 1 6.8600 6.2751 5.7085 32 1 10.1530 5.9550 5.6427 33 1 11.0236 4.2192 7.0340 34 1 7.9214 4.9155 8.3422 35 1 9.8860 6.3260 8.6058 36 1 9.5307 2.1011 4.7351 37 1 9.5338 2.5548 3.0139 38 1 10.5058 3.4833 4.1808 39 1 4.4915 0.0674 1.6556 40 1 3.5324 1.5155 2.1887 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12906260_10803936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:46:56 Heat of formation + Delta-G solvation = -35.699302 kcal Electronic energy + Delta-G solvation = -21955.308473 eV Core-core repulsion = 18545.686042 eV Total energy + Delta-G solvation = -3409.622431 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.47241 -40.94034 -39.39243 -38.14592 -37.85416 -34.82043 -33.53207 -31.52192 -29.66613 -27.40032 -27.21370 -26.79054 -26.39747 -23.80055 -22.57969 -21.30675 -20.88079 -20.02165 -18.69495 -18.46278 -17.62514 -17.19474 -16.93649 -16.81617 -16.64762 -16.02106 -15.84289 -15.79030 -15.21382 -14.92294 -14.39825 -14.33722 -13.97974 -13.91492 -13.63194 -13.54211 -13.23669 -13.19912 -12.99093 -12.88265 -12.67399 -12.40431 -12.07394 -12.05737 -11.70430 -11.40392 -10.94986 -10.73338 -10.59566 -10.02149 -9.65413 -8.98555 -4.99104 0.49151 1.13141 1.55437 1.68825 1.79643 1.99038 2.43790 2.46042 2.78389 3.01039 3.41555 3.55662 3.67512 3.76580 3.87319 3.87532 4.05686 4.25303 4.26952 4.32705 4.40900 4.43016 4.50007 4.52591 4.53804 4.59178 4.62534 4.71096 4.77616 4.78934 4.88283 5.00708 5.05648 5.06495 5.18298 5.28295 5.55347 5.80013 6.07989 6.20208 6.21993 6.27048 6.54359 7.25827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.072 3.928 4 C -0.107 4.107 5 H 0.104 0.896 6 C -0.137 4.137 7 C 0.125 3.875 8 H 0.118 0.882 9 N -0.709 5.709 10 C 0.592 3.408 11 O -0.547 6.547 12 C -0.055 4.055 13 C -0.134 4.134 14 C -0.202 4.202 15 C 0.059 3.941 16 C -0.057 4.057 17 O -0.541 6.541 18 Si 0.714 3.286 19 N -0.389 5.389 20 C 0.075 3.925 21 C -0.144 4.144 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.404 0.596 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.082 0.918 33 H 0.384 0.616 34 H -0.253 1.253 35 H -0.259 1.259 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 5.720 0.141 6.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.004 4.004 4 C -0.126 4.126 5 H 0.122 0.878 6 C -0.175 4.175 7 C 0.020 3.980 8 H 0.136 0.864 9 N -0.360 5.360 10 C 0.381 3.619 11 O -0.426 6.426 12 C -0.169 4.169 13 C -0.161 4.161 14 C -0.225 4.225 15 C -0.060 4.060 16 C -0.166 4.166 17 O -0.349 6.349 18 Si 0.613 3.387 19 N -0.060 5.060 20 C -0.065 4.065 21 C -0.183 4.183 22 H 0.105 0.895 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.239 0.761 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.099 0.901 33 H 0.233 0.767 34 H -0.177 1.177 35 H -0.184 1.184 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.903 4.258 0.311 4.674 hybrid contribution 0.573 -0.050 0.229 0.620 sum -1.329 4.209 0.540 4.446 Atomic orbital electron populations 1.22762 0.80817 1.03005 1.00011 1.87898 1.19818 1.27814 1.95401 1.22511 0.92778 0.84917 1.00238 1.22361 0.93134 0.98364 0.98705 0.87772 1.23355 0.96982 0.97130 1.00024 1.22533 0.96298 0.90006 0.89121 0.86368 1.45593 1.20807 1.27684 1.41885 1.17019 0.81361 0.83192 0.80369 1.90798 1.50814 1.34429 1.66529 1.20034 0.88961 1.04525 1.03427 1.21246 0.99411 0.96251 0.99146 1.20459 0.92903 1.04613 1.04561 1.19982 0.97019 0.93792 0.95185 1.24587 0.94274 0.91576 1.06183 1.86569 1.46513 1.32789 1.69026 0.94498 0.83025 0.86807 0.74419 1.43734 1.11860 1.24507 1.25944 1.22253 0.86549 0.93486 1.04250 1.23577 0.97132 1.00914 0.96663 0.89479 0.94022 0.94002 0.93101 0.93024 0.89198 0.90002 0.76094 0.83487 0.82859 0.90070 0.76693 1.17684 1.18413 0.90497 0.88382 0.89666 0.90540 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 101.05 1.11 1.10 16 2 O -0.39 -0.83 10.70 -35.23 -0.38 -1.20 16 3 C 0.07 -0.02 5.78 37.16 0.21 0.19 16 4 C -0.11 0.07 4.01 -89.71 -0.36 -0.29 16 5 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 6 C -0.14 0.27 7.39 -25.92 -0.19 0.08 16 7 C 0.13 0.01 4.25 -67.11 -0.28 -0.27 16 8 H 0.12 0.21 7.45 -51.93 -0.39 -0.17 16 9 N -0.71 -0.21 5.33 -54.32 -0.29 -0.50 16 10 C 0.59 2.18 7.77 -12.86 -0.10 2.08 16 11 O -0.55 -3.75 14.24 5.19 0.07 -3.68 16 12 C -0.06 -0.18 6.89 -81.98 -0.56 -0.74 16 13 C -0.13 -0.11 10.35 -39.12 -0.40 -0.51 16 14 C -0.20 -0.11 9.37 -39.98 -0.37 -0.48 16 15 C 0.06 0.12 6.18 -81.96 -0.51 -0.39 16 16 C -0.06 0.02 2.89 36.00 0.10 0.13 16 17 O -0.54 -0.14 10.47 -35.23 -0.37 -0.50 16 18 Si 0.71 -1.07 31.10 -169.99 -5.29 -6.36 16 19 N -0.39 -1.40 3.16 -115.62 -0.37 -1.77 16 20 C 0.08 0.22 9.27 59.85 0.56 0.78 16 21 C -0.14 -0.02 7.45 -25.82 -0.19 -0.21 16 22 H 0.09 -0.09 8.14 -51.93 -0.42 -0.52 16 23 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.04 -0.05 8.14 -51.93 -0.42 -0.48 16 25 H 0.05 -0.06 7.86 -51.93 -0.41 -0.47 16 26 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 27 H 0.09 -0.30 8.07 -51.93 -0.42 -0.72 16 28 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 29 H 0.40 -0.96 7.66 -40.82 -0.31 -1.27 16 30 H 0.15 -0.35 7.49 -52.48 -0.39 -0.74 16 31 H 0.15 -0.41 6.85 -52.49 -0.36 -0.77 16 32 H 0.08 -0.17 7.96 -51.93 -0.41 -0.59 16 33 H 0.38 -1.46 8.74 45.56 0.40 -1.06 16 34 H -0.25 -0.63 7.11 56.52 0.40 -0.23 16 35 H -0.26 -0.05 7.11 56.52 0.40 0.35 16 36 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.39 6.18 -51.93 -0.32 0.06 16 38 H 0.08 0.13 7.10 -51.93 -0.37 -0.24 16 39 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.09 -0.03 7.91 -51.93 -0.41 -0.44 16 LS Contribution 330.23 15.07 4.98 4.98 Total: 0.00 -8.69 330.23 -8.60 -17.29 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: -5.97 Total: -9.72 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.99 Total: 1.46 kcal Atomic # 7 Polarization: -1.61 SS G_CDS: -0.66 Total: -2.27 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.67 Total: -5.38 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.29 Total: -6.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -8.69 -8.60 -17.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_10803936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.405 kcal (2) G-P(sol) polarization free energy of solvation -8.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds