Wall clock time and date at job start Sat Mar 6 2021 20:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00054 * 2 1 4 4 C 1.52998 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84968 * 43.80421 * 4 3 2 6 6 C 1.53784 * 113.61524 * 175.00216 * 4 3 2 7 7 C 1.53783 * 87.08081 * 140.06425 * 6 4 3 8 8 H 1.08992 * 113.61755 * 89.19695 * 7 6 4 9 9 N 1.46501 * 113.61417 * 220.01854 * 7 6 4 10 10 C 1.34769 * 120.00354 * 203.46915 * 9 7 6 11 11 O 1.21704 * 119.99707 * 5.08214 * 10 9 7 12 12 C 1.46675 * 120.00342 * 185.08231 * 10 9 7 13 13 C 1.37870 * 126.23612 * 5.51011 * 12 10 9 14 14 C 1.39834 * 107.08925 * 180.11468 * 13 12 10 15 15 C 1.35452 * 107.86185 * 359.57712 * 14 13 12 16 16 C 1.50696 * 125.56012 * 180.23970 * 15 14 13 17 17 O 1.42906 * 109.46938 * 150.02565 * 16 15 14 18 18 Si 1.86302 * 109.47489 * 30.02403 * 16 15 14 19 19 N 1.35529 * 108.87566 * 0.25931 * 15 14 13 20 20 C 1.46498 * 125.68028 * 179.97438 * 19 15 14 21 21 C 1.53784 * 87.17262 * 334.60674 * 7 6 4 22 22 H 1.09003 * 109.47282 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47216 * 299.99959 * 1 2 3 24 24 H 1.09000 * 109.47324 * 59.99810 * 1 2 3 25 25 H 1.09002 * 109.47343 * 60.00162 * 3 2 1 26 26 H 1.09003 * 109.47585 * 300.00542 * 3 2 1 27 27 H 1.08998 * 113.61577 * 25.51456 * 6 4 3 28 28 H 1.09001 * 113.61306 * 254.61057 * 6 4 3 29 29 H 0.97005 * 119.99986 * 23.46640 * 9 7 6 30 30 H 1.08009 * 126.45146 * 359.95185 * 13 12 10 31 31 H 1.07998 * 126.06906 * 179.83269 * 14 13 12 32 32 H 1.09003 * 109.47396 * 270.02145 * 16 15 14 33 33 H 0.96701 * 114.00093 * 180.02562 * 17 16 15 34 34 H 1.48500 * 109.99841 * 59.99633 * 18 16 15 35 35 H 1.48495 * 110.00286 * 181.31383 * 18 16 15 36 36 H 1.09000 * 109.46995 * 85.41824 * 20 19 15 37 37 H 1.09003 * 109.46840 * 205.41915 * 20 19 15 38 38 H 1.08999 * 109.46837 * 325.41671 * 20 19 15 39 39 H 1.08999 * 113.61385 * 139.93725 * 21 7 6 40 40 H 1.08993 * 113.61585 * 270.84607 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8998 0.4287 -0.6962 6 6 4.2603 2.5353 -0.1234 7 6 5.2691 1.9983 0.9055 8 1 6.1082 1.4661 0.4577 9 7 5.6898 2.9971 1.8913 10 6 6.8660 2.8559 2.5339 11 8 7.6206 1.9507 2.2299 12 6 7.2367 3.7930 3.5996 13 6 6.4417 4.7927 4.1187 14 6 7.1893 5.4409 5.1067 15 6 8.3977 4.8332 5.1791 16 6 9.5138 5.2111 6.1184 17 8 10.2861 4.0502 6.4319 18 14 8.7948 5.9201 7.6840 19 7 8.4392 3.8302 4.2686 20 6 9.5751 2.9350 4.0346 21 6 4.1488 1.0718 1.4069 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.6744 3.3799 0.2392 28 1 4.6928 2.7108 -1.1085 29 1 5.1218 3.7601 2.0815 30 1 5.4326 5.0320 3.8169 31 1 6.8600 6.2751 5.7085 32 1 10.1530 5.9550 5.6427 33 1 11.0236 4.2192 7.0340 34 1 7.9214 4.9155 8.3422 35 1 9.8860 6.3260 8.6058 36 1 9.5307 2.1011 4.7351 37 1 9.5338 2.5548 3.0139 38 1 10.5058 3.4833 4.1808 39 1 4.4915 0.0674 1.6556 40 1 3.5324 1.5155 2.1887 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_10803936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:46:56 Heat of formation + Delta-G solvation = -36.759000 kcal Electronic energy + Delta-G solvation = -21955.354425 eV Core-core repulsion = 18545.686042 eV Total energy + Delta-G solvation = -3409.668383 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.56269 -40.99893 -39.52441 -38.18455 -37.84315 -34.96529 -33.65675 -31.56854 -29.64177 -27.51406 -27.25347 -26.77566 -26.37978 -23.83070 -22.64727 -21.41642 -20.88282 -20.10120 -18.73433 -18.47549 -17.68085 -17.25331 -16.99944 -16.80354 -16.71817 -16.10834 -15.87931 -15.83907 -15.33407 -15.01563 -14.50586 -14.41543 -13.99644 -13.93789 -13.63160 -13.45237 -13.34144 -13.21769 -12.99469 -12.93626 -12.73681 -12.40144 -12.10387 -12.06660 -11.66423 -11.40794 -11.12020 -10.76975 -10.58084 -10.14291 -9.74862 -9.05557 -4.87928 0.35796 1.18503 1.58049 1.68686 1.77797 2.04230 2.30065 2.35291 2.83493 3.13288 3.44053 3.59352 3.66962 3.75206 3.82471 3.90546 3.94633 4.26833 4.32119 4.38204 4.39954 4.41896 4.49563 4.54142 4.55265 4.60782 4.63799 4.71741 4.77995 4.81665 4.86015 5.00128 5.05797 5.09502 5.17104 5.24791 5.53219 5.78130 6.00713 6.14000 6.25573 6.47676 6.51405 7.12194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.070 3.930 4 C -0.105 4.105 5 H 0.092 0.908 6 C -0.117 4.117 7 C 0.119 3.881 8 H 0.094 0.906 9 N -0.692 5.692 10 C 0.585 3.415 11 O -0.592 6.592 12 C -0.090 4.090 13 C -0.121 4.121 14 C -0.206 4.206 15 C 0.043 3.957 16 C -0.071 4.071 17 O -0.563 6.563 18 Si 0.811 3.189 19 N -0.409 5.409 20 C 0.084 3.916 21 C -0.144 4.144 22 H 0.088 0.912 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.419 0.581 30 H 0.180 0.820 31 H 0.188 0.812 32 H 0.103 0.897 33 H 0.400 0.600 34 H -0.310 1.310 35 H -0.280 1.280 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 8.061 0.386 8.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.006 4.006 4 C -0.124 4.124 5 H 0.110 0.890 6 C -0.155 4.155 7 C 0.014 3.986 8 H 0.112 0.888 9 N -0.343 5.343 10 C 0.375 3.625 11 O -0.475 6.475 12 C -0.203 4.203 13 C -0.147 4.147 14 C -0.229 4.229 15 C -0.075 4.075 16 C -0.178 4.178 17 O -0.373 6.373 18 Si 0.714 3.286 19 N -0.082 5.082 20 C -0.057 4.057 21 C -0.182 4.182 22 H 0.107 0.893 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.106 0.894 29 H 0.257 0.743 30 H 0.198 0.802 31 H 0.205 0.795 32 H 0.121 0.879 33 H 0.251 0.749 34 H -0.238 1.238 35 H -0.207 1.207 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.094 6.641 0.529 7.346 hybrid contribution 0.929 -0.813 0.213 1.253 sum -2.165 5.828 0.742 6.262 Atomic orbital electron populations 1.22883 0.79782 1.03501 1.00873 1.87859 1.21161 1.29368 1.95612 1.22628 0.92400 0.84277 1.01336 1.22311 0.93448 0.99012 0.97654 0.88954 1.23290 0.95674 0.96980 0.99545 1.22515 0.95890 0.90381 0.89839 0.88759 1.45478 1.19892 1.27909 1.40977 1.17312 0.81781 0.82838 0.80615 1.90768 1.52364 1.36342 1.68008 1.20253 0.89795 1.05868 1.04407 1.21728 1.00361 0.94613 0.98046 1.20974 0.92180 1.05174 1.04564 1.20623 0.98413 0.93405 0.95070 1.24933 0.94381 0.91670 1.06806 1.86536 1.47409 1.33617 1.69758 0.93466 0.79521 0.83942 0.71628 1.43913 1.12082 1.25256 1.26939 1.22074 0.87389 0.93455 1.02808 1.23575 0.97306 0.99781 0.97585 0.89312 0.93164 0.93076 0.91919 0.91852 0.86807 0.89370 0.74283 0.80241 0.79547 0.87926 0.74862 1.23804 1.20653 0.91786 0.90036 0.88507 0.92723 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.84 10.70 -148.98 -1.59 -3.44 16 3 C 0.07 -0.09 5.78 71.98 0.42 0.32 16 4 C -0.11 0.11 4.01 -10.21 -0.04 0.07 16 5 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 6 C -0.12 0.56 7.39 31.12 0.23 0.79 16 7 C 0.12 0.14 4.25 45.52 0.19 0.33 16 8 H 0.09 0.59 7.45 -2.39 -0.02 0.58 16 9 N -0.69 -0.65 5.33 -444.00 -2.37 -3.01 16 10 C 0.58 5.27 7.77 86.45 0.67 5.95 16 11 O -0.59 -10.02 14.24 -4.36 -0.06 -10.08 16 12 C -0.09 -0.65 6.89 40.35 0.28 -0.37 16 13 C -0.12 -0.04 10.35 22.57 0.23 0.19 16 14 C -0.21 0.10 9.37 22.01 0.21 0.30 16 15 C 0.04 0.16 6.18 41.34 0.26 0.41 16 16 C -0.07 0.11 2.89 71.23 0.21 0.31 16 17 O -0.56 -0.44 10.47 -148.98 -1.56 -2.00 16 18 Si 0.81 -3.16 31.10 68.60 2.13 -1.03 16 19 N -0.41 -3.42 3.16 -519.71 -1.64 -5.07 16 20 C 0.08 0.69 9.27 127.77 1.18 1.88 16 21 C -0.14 -0.17 7.45 31.18 0.23 0.06 16 22 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 24 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.06 -0.24 7.86 -2.39 -0.02 -0.26 16 26 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.11 -1.06 8.07 -2.39 -0.02 -1.08 16 28 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.42 -2.48 7.66 -92.70 -0.71 -3.20 16 30 H 0.18 -1.35 7.49 -2.91 -0.02 -1.37 16 31 H 0.19 -1.54 6.85 -2.91 -0.02 -1.56 16 32 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 33 H 0.40 -3.05 8.74 -74.06 -0.65 -3.70 16 34 H -0.31 -1.79 7.11 99.48 0.71 -1.08 16 35 H -0.28 0.17 7.11 99.48 0.71 0.87 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.92 6.18 -2.39 -0.01 0.91 16 38 H 0.10 0.46 7.10 -2.39 -0.02 0.44 16 39 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.10 -0.07 7.91 -2.39 -0.02 -0.09 16 Total: 0.00 -23.58 330.23 -0.05 -23.62 By element: Atomic # 1 Polarization: -10.20 SS G_CDS: -0.27 Total: -10.46 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 5.31 Total: 11.48 kcal Atomic # 7 Polarization: -4.07 SS G_CDS: -4.01 Total: -8.08 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -3.22 Total: -15.53 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: 2.13 Total: -1.03 kcal Total: -23.58 -0.05 -23.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_10803936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.135 kcal (2) G-P(sol) polarization free energy of solvation -23.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds