Wall clock time and date at job start Sat Mar 6 2021 20:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.85169 * 314.66668 * 4 3 2 6 6 C 1.53782 * 113.61578 * 85.86323 * 4 3 2 7 7 C 1.53958 * 87.01835 * 139.95206 * 6 4 3 8 8 H 1.09001 * 113.53815 * 89.18604 * 7 6 4 9 9 N 1.46503 * 113.74063 * 220.05634 * 7 6 4 10 10 C 1.34778 * 119.99885 * 252.59535 * 9 7 6 11 11 O 1.21720 * 119.99765 * 0.02562 * 10 9 7 12 12 C 1.46563 * 119.99720 * 179.97438 * 10 9 7 13 13 C 1.40861 * 126.57705 * 179.97438 * 12 10 9 14 14 C 1.40089 * 132.86462 * 0.02562 * 13 12 10 15 15 C 1.36448 * 119.25502 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.29840 * 179.97438 * 15 14 13 17 17 O 1.42891 * 109.47325 * 239.99874 * 16 15 14 18 18 Si 1.86298 * 109.47024 * 120.00001 * 16 15 14 19 19 C 1.40161 * 119.40760 * 359.97438 * 15 14 13 20 20 C 1.35186 * 120.32081 * 359.97438 * 19 15 14 21 21 N 1.36242 * 120.70549 * 0.03653 * 20 19 15 22 22 N 1.40019 * 132.01765 * 180.02562 * 21 20 19 23 23 C 1.30739 * 109.60521 * 179.68653 * 22 21 20 24 24 C 1.53777 * 87.11068 * 334.63766 * 7 6 4 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 28 28 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 29 29 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 30 30 H 1.09001 * 113.61200 * 254.52661 * 6 4 3 31 31 H 1.08992 * 113.61361 * 25.42976 * 6 4 3 32 32 H 0.96999 * 119.99973 * 72.59687 * 9 7 6 33 33 H 1.08001 * 120.37171 * 359.94580 * 14 13 12 34 34 H 1.08998 * 109.46876 * 0.02562 * 16 15 14 35 35 H 0.96704 * 114.00579 * 300.00341 * 17 16 15 36 36 H 1.48500 * 110.00341 * 58.68080 * 18 16 15 37 37 H 1.48504 * 110.00005 * 180.02562 * 18 16 15 38 38 H 1.08004 * 119.84040 * 179.97438 * 19 15 14 39 39 H 1.07998 * 119.65276 * 179.97438 * 20 19 15 40 40 H 1.08001 * 125.62379 * 180.24096 * 23 22 21 41 41 H 1.09001 * 113.61792 * 270.81436 * 24 7 6 42 42 H 1.08999 * 113.61735 * 139.91392 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9020 0.4471 0.7134 6 6 4.1410 1.0348 -1.4063 7 6 5.2653 1.9749 -0.9345 8 1 6.1056 1.4530 -0.4766 9 7 5.6833 2.9487 -1.9461 10 6 6.8711 2.8075 -2.5671 11 8 7.5963 1.8707 -2.2878 12 6 7.2889 3.7814 -3.5795 13 6 8.4934 3.7687 -4.3098 14 6 9.5951 2.9034 -4.3159 15 6 10.6391 3.1590 -5.1564 16 6 11.8362 2.2440 -5.1819 17 8 13.0086 2.9836 -4.8349 18 14 12.0357 1.5300 -6.8910 19 6 10.5883 4.2803 -5.9958 20 6 9.5144 5.1012 -5.9737 21 7 8.4672 4.8545 -5.1379 22 7 7.2604 5.5310 -4.9225 23 6 6.5615 4.9029 -4.0136 24 6 4.2607 2.5379 0.0846 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 4.4811 0.0236 -1.6297 31 1 3.5207 1.4581 -2.1962 32 1 5.1052 3.6950 -2.1688 33 1 9.6179 2.0438 -3.6624 34 1 11.6909 1.4356 -4.4654 35 1 13.1998 3.7204 -5.4314 36 1 12.2025 2.6232 -7.8820 37 1 13.2127 0.6252 -6.9292 38 1 11.4110 4.4895 -6.6635 39 1 9.4867 5.9624 -6.6248 40 1 5.5875 5.1991 -3.6529 41 1 3.6732 3.3729 -0.2970 42 1 4.6973 2.7385 1.0630 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_11618758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:46:58 Heat of formation + Delta-G solvation = 19.232211 kcal Electronic energy + Delta-G solvation = -25790.689019 eV Core-core repulsion = 21933.344265 eV Total energy + Delta-G solvation = -3857.344754 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.31874 -41.03840 -39.66576 -39.25558 -38.12140 -37.31905 -34.59841 -34.14671 -32.12015 -30.58272 -29.41250 -27.39224 -26.86399 -26.54137 -25.14677 -24.19834 -23.17683 -22.57605 -21.39502 -20.54252 -19.05319 -18.61047 -18.00771 -17.59882 -17.41147 -17.08389 -16.99728 -16.77020 -16.48347 -16.01366 -15.84807 -15.72615 -15.50230 -15.46248 -14.84823 -14.64876 -14.24009 -13.92950 -13.82112 -13.49505 -13.40138 -13.24556 -13.14422 -12.93514 -12.46929 -12.36498 -12.15059 -11.99305 -11.89535 -11.63125 -11.57561 -11.35103 -10.92771 -10.88335 -10.56088 -10.32880 -10.00508 -8.79989 -4.89014 -0.56937 -0.14471 1.01794 1.02868 1.21077 1.59670 1.88751 2.07743 2.25935 2.48784 2.85340 3.08775 3.23235 3.36581 3.51393 3.54728 3.66677 3.70621 3.86288 3.87022 3.95730 3.98651 4.18274 4.32424 4.35956 4.41230 4.43244 4.51419 4.57056 4.59337 4.62724 4.74645 4.76597 4.86187 4.87027 4.87607 5.06664 5.10126 5.11546 5.15784 5.27220 5.34614 5.63926 5.65569 6.27096 6.28379 6.46104 6.64318 7.32540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.070 3.930 4 C -0.107 4.107 5 H 0.092 0.908 6 C -0.142 4.142 7 C 0.121 3.879 8 H 0.094 0.906 9 N -0.703 5.703 10 C 0.598 3.402 11 O -0.592 6.592 12 C -0.341 4.341 13 C 0.152 3.848 14 C -0.116 4.116 15 C -0.051 4.051 16 C -0.085 4.085 17 O -0.542 6.542 18 Si 0.768 3.232 19 C -0.157 4.157 20 C 0.118 3.882 21 N -0.274 5.274 22 N -0.340 5.340 23 C 0.132 3.868 24 C -0.120 4.120 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.414 0.586 33 H 0.150 0.850 34 H 0.122 0.878 35 H 0.390 0.610 36 H -0.253 1.253 37 H -0.294 1.294 38 H 0.191 0.809 39 H 0.206 0.794 40 H 0.235 0.765 41 H 0.111 0.889 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 3.847 -3.139 6.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.006 4.006 4 C -0.126 4.126 5 H 0.110 0.890 6 C -0.181 4.181 7 C 0.016 3.984 8 H 0.112 0.888 9 N -0.354 5.354 10 C 0.388 3.612 11 O -0.474 6.474 12 C -0.355 4.355 13 C 0.030 3.970 14 C -0.136 4.136 15 C -0.057 4.057 16 C -0.192 4.192 17 O -0.350 6.350 18 Si 0.668 3.332 19 C -0.178 4.178 20 C -0.008 4.008 21 N -0.038 5.038 22 N -0.160 5.160 23 C -0.049 4.049 24 C -0.158 4.158 25 H 0.107 0.893 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.251 0.749 33 H 0.168 0.832 34 H 0.140 0.860 35 H 0.241 0.759 36 H -0.177 1.177 37 H -0.221 1.221 38 H 0.208 0.792 39 H 0.222 0.778 40 H 0.251 0.749 41 H 0.129 0.871 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.445 3.644 -3.926 5.888 hybrid contribution 0.108 0.573 0.903 1.075 sum -2.337 4.218 -3.023 5.691 Atomic orbital electron populations 1.22882 0.79836 1.03510 1.00811 1.87862 1.21103 1.29342 1.95599 1.22629 0.92571 0.84253 1.01180 1.22291 0.93304 0.98952 0.98019 0.89000 1.23542 0.97318 0.99876 0.97318 1.22456 0.95807 0.90760 0.89359 0.88772 1.45539 1.19170 1.30011 1.40662 1.17080 0.81136 0.83253 0.79747 1.90753 1.55070 1.34745 1.66865 1.19719 0.98405 1.05592 1.11818 1.19559 0.96028 0.89284 0.92088 1.20655 0.91492 1.00480 1.00968 1.20566 0.95882 0.95713 0.93502 1.25297 0.82322 0.96306 1.15312 1.86679 1.43299 1.48458 1.56593 0.93411 0.86231 0.81625 0.71898 1.21096 0.99528 0.94813 1.02341 1.22190 0.83980 1.01770 0.92876 1.46305 1.14268 1.17466 1.25740 1.77567 0.92550 1.20992 1.24912 1.24610 0.99659 0.90003 0.90607 1.23299 0.95995 0.96816 0.99707 0.89254 0.93188 0.93182 0.91981 0.92104 0.92538 0.88770 0.74869 0.83193 0.85991 0.75934 1.17690 1.22059 0.79241 0.77755 0.74863 0.87064 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.81 10.70 -148.98 -1.59 -3.40 16 3 C 0.07 -0.09 5.76 71.98 0.41 0.33 16 4 C -0.11 0.12 4.00 -10.27 -0.04 0.07 16 5 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 6 C -0.14 -0.10 7.45 31.18 0.23 0.13 16 7 C 0.12 0.10 4.24 45.58 0.19 0.29 16 8 H 0.09 0.56 7.46 -2.39 -0.02 0.54 16 9 N -0.70 -0.12 5.35 -443.80 -2.38 -2.50 16 10 C 0.60 4.67 7.78 86.41 0.67 5.34 16 11 O -0.59 -9.23 15.30 -4.41 -0.07 -9.30 16 12 C -0.34 -2.02 6.17 -19.90 -0.12 -2.15 16 13 C 0.15 1.03 6.76 39.50 0.27 1.29 16 14 C -0.12 -0.56 9.35 22.30 0.21 -0.35 16 15 C -0.05 0.05 4.53 -19.82 -0.09 -0.04 16 16 C -0.08 0.18 2.84 71.23 0.20 0.38 16 17 O -0.54 0.00 12.87 -148.98 -1.92 -1.92 16 18 Si 0.77 -3.59 31.97 68.60 2.19 -1.40 16 19 C -0.16 0.85 8.38 22.03 0.18 1.03 16 20 C 0.12 -0.35 11.17 83.30 0.93 0.58 16 21 N -0.27 -1.10 3.86 -187.27 -0.72 -1.82 16 22 N -0.34 -1.61 12.57 -56.62 -0.71 -2.32 16 23 C 0.13 0.12 11.44 85.42 0.98 1.09 16 24 C -0.12 0.56 7.40 31.12 0.23 0.79 16 25 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.05 -0.15 8.14 -2.38 -0.02 -0.17 16 28 H 0.06 -0.23 7.87 -2.39 -0.02 -0.25 16 29 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 -0.11 7.92 -2.39 -0.02 -0.13 16 32 H 0.41 -2.87 7.65 -92.71 -0.71 -3.57 16 33 H 0.15 1.07 7.01 -2.91 -0.02 1.05 16 34 H 0.12 -0.19 7.70 -2.39 -0.02 -0.21 16 35 H 0.39 -3.21 8.08 -74.05 -0.60 -3.81 16 36 H -0.25 1.12 7.05 99.48 0.70 1.83 16 37 H -0.29 -0.95 7.11 99.48 0.71 -0.24 16 38 H 0.19 -2.38 7.26 -2.91 -0.02 -2.41 16 39 H 0.21 -1.95 8.06 -2.91 -0.02 -1.97 16 40 H 0.24 -2.13 7.46 -2.91 -0.02 -2.15 16 41 H 0.11 -1.00 8.08 -2.39 -0.02 -1.02 16 42 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: 0.00 -25.97 356.62 0.10 -25.87 By element: Atomic # 1 Polarization: -13.01 SS G_CDS: -0.22 Total: -13.23 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.51 Total: 10.01 kcal Atomic # 7 Polarization: -2.83 SS G_CDS: -3.81 Total: -6.64 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -3.58 Total: -14.61 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.19 Total: -1.40 kcal Total: -25.97 0.10 -25.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_11618758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.104 kcal (2) G-P(sol) polarization free energy of solvation -25.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds