Wall clock time and date at job start Sat Mar 6 2021 20:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00160 * 2 1 4 4 C 1.52996 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.09000 * 112.85027 * 43.80973 * 4 3 2 6 6 C 1.53782 * 113.61424 * 175.00324 * 4 3 2 7 7 C 1.53776 * 87.08339 * 140.06514 * 6 4 3 8 8 H 1.09004 * 113.61073 * 89.20232 * 7 6 4 9 9 N 1.46497 * 113.61625 * 220.01665 * 7 6 4 10 10 C 1.34770 * 120.00094 * 205.00115 * 9 7 6 11 11 O 1.21615 * 120.00243 * 0.02562 * 10 9 7 12 12 C 1.47312 * 120.00115 * 180.02562 * 10 9 7 13 13 C 1.40295 * 120.13515 * 179.97438 * 12 10 9 14 14 O 1.35654 * 120.11944 * 359.70387 * 13 12 10 15 15 C 1.42903 * 116.99911 * 179.97438 * 14 13 12 16 16 C 1.38441 * 119.75692 * 179.72709 * 13 12 10 17 17 C 1.38684 * 120.03472 * 0.02562 * 16 13 12 18 18 O 1.35714 * 119.86524 * 179.97438 * 17 16 13 19 19 C 1.42903 * 116.99675 * 0.02562 * 18 17 16 20 20 C 1.39183 * 120.27196 * 0.02562 * 17 16 13 21 21 C 1.50701 * 119.87970 * 179.97438 * 20 17 16 22 22 O 1.42901 * 109.47253 * 74.99864 * 21 20 17 23 23 Si 1.86305 * 109.47034 * 195.00019 * 21 20 17 24 24 C 1.37544 * 120.24428 * 359.95121 * 20 17 16 25 25 C 1.53773 * 87.08136 * 334.56953 * 7 6 4 26 26 H 1.09005 * 109.46903 * 299.99632 * 1 2 3 27 27 H 1.09005 * 109.47576 * 59.99603 * 1 2 3 28 28 H 1.09001 * 109.47517 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46673 * 60.00625 * 3 2 1 30 30 H 1.09001 * 109.47288 * 300.00794 * 3 2 1 31 31 H 1.09001 * 113.61258 * 25.51435 * 6 4 3 32 32 H 1.09000 * 113.61373 * 254.61600 * 6 4 3 33 33 H 0.97005 * 120.00037 * 25.00766 * 9 7 6 34 34 H 1.09003 * 109.46991 * 60.00255 * 15 14 13 35 35 H 1.08997 * 109.47359 * 179.97438 * 15 14 13 36 36 H 1.08998 * 109.46735 * 300.00083 * 15 14 13 37 37 H 1.07998 * 119.97842 * 180.02562 * 16 13 12 38 38 H 1.09004 * 109.46810 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47257 * 299.99704 * 19 18 17 40 40 H 1.09001 * 109.47118 * 60.00297 * 19 18 17 41 41 H 1.09002 * 109.47192 * 314.99804 * 21 20 17 42 42 H 0.96698 * 113.99683 * 60.00474 * 22 21 20 43 43 H 1.48498 * 109.99796 * 179.97438 * 23 21 20 44 44 H 1.48498 * 110.00130 * 301.31572 * 23 21 20 45 45 H 1.07995 * 120.02519 * 180.02562 * 24 20 17 46 46 H 1.08999 * 113.61859 * 139.97675 * 25 7 6 47 47 H 1.09000 * 113.61841 * 270.88261 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8998 0.4287 -0.6963 6 6 4.2603 2.5353 -0.1234 7 6 5.2691 1.9983 0.9055 8 1 6.1083 1.4660 0.4574 9 7 5.6900 2.9969 1.8912 10 6 6.8801 2.8720 2.5112 11 8 7.6050 1.9306 2.2519 12 6 7.3030 3.8760 3.5028 13 6 8.5411 3.7484 4.1502 14 8 9.3508 2.6968 3.8697 15 6 10.5964 2.6330 4.5672 16 6 8.9332 4.6995 5.0767 17 6 8.1036 5.7733 5.3627 18 8 8.4912 6.7034 6.2719 19 6 9.7639 6.5124 6.8930 20 6 6.8745 5.9006 4.7220 21 6 5.9797 7.0707 5.0401 22 8 6.4984 8.2493 4.4205 23 14 4.2644 6.7339 4.3957 24 6 6.4739 4.9626 3.7993 25 6 4.1471 1.0734 1.4059 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6887 1.8463 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 3.6744 3.3798 0.2392 32 1 4.6928 2.7107 -1.1085 33 1 5.1119 3.7481 2.0978 34 1 10.4100 2.5811 5.6399 35 1 11.1450 1.7458 4.2509 36 1 11.1842 3.5232 4.3432 37 1 9.8857 4.6051 5.5768 38 1 9.9508 7.3245 7.5957 39 1 9.7690 5.5617 7.4262 40 1 10.5429 6.5057 6.1306 41 1 5.9403 7.2151 6.1197 42 1 6.5615 8.1920 3.4572 43 1 3.3720 7.8802 4.7035 44 1 4.3088 6.5037 2.9293 45 1 5.5197 5.0650 3.3040 46 1 4.4881 0.0687 1.6554 47 1 3.5302 1.5182 2.1867 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_12297780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:47:04 Heat of formation + Delta-G solvation = -123.000081 kcal Electronic energy + Delta-G solvation = -30040.018090 eV Core-core repulsion = 25770.907781 eV Total energy + Delta-G solvation = -4269.110310 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.11819 -41.02183 -40.14057 -39.45738 -38.51855 -38.11453 -37.06320 -34.62575 -32.26488 -31.76758 -29.56949 -28.98323 -28.15380 -26.91839 -26.57948 -26.12685 -24.91615 -23.44813 -22.41113 -21.56769 -20.67754 -19.99890 -18.82489 -18.18342 -17.99328 -17.54585 -17.23029 -17.15913 -16.78407 -16.62320 -16.53564 -16.33812 -16.01986 -15.88352 -15.75276 -15.61653 -15.54013 -15.26100 -14.66030 -14.21573 -14.00381 -13.97303 -13.53359 -13.40478 -13.25480 -13.10846 -12.91170 -12.69047 -12.53968 -12.52580 -12.35397 -12.21258 -12.01514 -11.78411 -11.67767 -11.60395 -11.35356 -10.87176 -10.54480 -10.53753 -10.05852 -9.91397 -9.19218 -4.89794 -0.25802 0.07902 1.31466 1.55909 1.73009 1.98723 2.12108 2.12413 2.19055 2.59954 2.86276 3.43638 3.46520 3.50018 3.61299 3.65876 3.74605 3.80715 3.87257 3.95016 4.11657 4.16736 4.23640 4.26909 4.27800 4.29772 4.35908 4.43678 4.52499 4.54004 4.59919 4.63776 4.64045 4.67268 4.75553 4.75676 4.82167 4.85632 4.89021 4.94255 5.03193 5.07123 5.10716 5.29353 5.31944 5.61386 6.03684 6.28479 6.29393 6.55405 6.57243 7.26136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.069 3.931 4 C -0.106 4.106 5 H 0.091 0.909 6 C -0.123 4.123 7 C 0.118 3.882 8 H 0.094 0.906 9 N -0.708 5.708 10 C 0.563 3.437 11 O -0.566 6.566 12 C -0.227 4.227 13 C 0.217 3.783 14 O -0.305 6.305 15 C 0.010 3.990 16 C -0.311 4.311 17 C 0.215 3.785 18 O -0.312 6.312 19 C 0.012 3.988 20 C -0.197 4.197 21 C -0.072 4.072 22 O -0.546 6.546 23 Si 0.760 3.240 24 C 0.001 3.999 25 C -0.142 4.142 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.411 0.589 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.162 0.838 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.384 0.616 43 H -0.300 1.300 44 H -0.251 1.251 45 H 0.163 0.837 46 H 0.056 0.944 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 2.465 2.215 3.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.007 4.007 4 C -0.125 4.125 5 H 0.110 0.890 6 C -0.161 4.161 7 C 0.013 3.987 8 H 0.112 0.888 9 N -0.360 5.360 10 C 0.352 3.648 11 O -0.446 6.446 12 C -0.231 4.231 13 C 0.168 3.832 14 O -0.215 6.215 15 C -0.084 4.084 16 C -0.330 4.330 17 C 0.167 3.833 18 O -0.223 6.223 19 C -0.082 4.082 20 C -0.198 4.198 21 C -0.180 4.180 22 O -0.354 6.354 23 Si 0.663 3.337 24 C -0.017 4.017 25 C -0.180 4.180 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.180 0.820 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.233 0.767 43 H -0.228 1.228 44 H -0.176 1.176 45 H 0.180 0.820 46 H 0.075 0.925 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.168 2.092 2.051 3.645 hybrid contribution 1.060 0.907 -0.316 1.430 sum -1.108 2.999 1.735 3.638 Atomic orbital electron populations 1.22880 0.79834 1.03487 1.00839 1.87862 1.21100 1.29312 1.95604 1.22636 0.92452 0.84294 1.01296 1.22278 0.93383 0.98813 0.98004 0.89037 1.23326 0.96008 0.97068 0.99655 1.22466 0.95902 0.90460 0.89837 0.88756 1.45768 1.19157 1.28802 1.42281 1.18120 0.81405 0.84659 0.80625 1.90815 1.54457 1.34086 1.65218 1.19154 0.96455 1.01070 1.06427 1.19001 0.88885 0.85462 0.89871 1.86368 1.30501 1.41849 1.62822 1.23469 0.82656 1.04678 0.97588 1.21414 1.05006 0.98765 1.07825 1.18934 0.91829 0.86115 0.86464 1.86144 1.38397 1.45828 1.51974 1.23464 0.81864 1.04793 0.98082 1.19500 0.96153 1.01156 1.03021 1.25116 1.06178 0.83488 1.03234 1.86616 1.85865 1.37235 1.25698 0.94307 0.72914 0.85943 0.80562 1.20996 0.97998 0.89720 0.93031 1.23535 0.97165 0.99952 0.97388 0.93047 0.93265 0.89308 0.91702 0.92155 0.87110 0.89660 0.75141 0.90902 0.86951 0.91158 0.82024 0.86305 0.90983 0.91549 0.86947 0.76724 1.22812 1.17630 0.81992 0.92486 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.65 10.70 -148.98 -1.59 -3.24 16 3 C 0.07 -0.11 5.78 71.98 0.42 0.30 16 4 C -0.11 0.13 4.01 -10.27 -0.04 0.09 16 5 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 6 C -0.12 0.55 7.39 31.12 0.23 0.78 16 7 C 0.12 0.13 4.24 45.51 0.19 0.32 16 8 H 0.09 0.60 7.46 -2.38 -0.02 0.58 16 9 N -0.71 -0.54 5.30 -443.44 -2.35 -2.89 16 10 C 0.56 4.69 7.76 86.63 0.67 5.36 16 11 O -0.57 -9.79 14.75 16.89 0.25 -9.54 16 12 C -0.23 -1.16 5.89 -20.00 -0.12 -1.28 16 13 C 0.22 1.37 6.69 22.82 0.15 1.52 16 14 O -0.30 -2.68 8.56 -68.73 -0.59 -3.27 16 15 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 16 C -0.31 -0.55 8.01 22.42 0.18 -0.37 16 17 C 0.21 0.51 6.67 22.60 0.15 0.66 16 18 O -0.31 -0.68 9.80 -90.35 -0.89 -1.57 16 19 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 20 C -0.20 -0.09 5.27 -19.80 -0.10 -0.20 16 21 C -0.07 0.04 2.37 71.24 0.17 0.21 16 22 O -0.55 -1.48 12.88 -148.98 -1.92 -3.40 16 23 Si 0.76 -3.74 30.24 68.60 2.07 -1.66 16 24 C 0.00 0.00 8.14 22.50 0.18 0.18 16 25 C -0.14 -0.06 7.43 31.12 0.23 0.17 16 26 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 27 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 28 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.06 -0.29 7.85 -2.39 -0.02 -0.31 16 30 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.11 -0.97 8.08 -2.39 -0.02 -0.99 16 32 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.41 -2.43 6.75 -92.70 -0.63 -3.05 16 34 H 0.07 -0.31 7.66 -2.39 -0.02 -0.33 16 35 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.07 -0.28 7.66 -2.39 -0.02 -0.29 16 37 H 0.16 -0.50 4.50 -2.91 -0.01 -0.51 16 38 H 0.12 -0.92 8.14 -2.38 -0.02 -0.94 16 39 H 0.07 -0.54 7.65 -2.39 -0.02 -0.55 16 40 H 0.07 -0.43 7.65 -2.39 -0.02 -0.45 16 41 H 0.11 0.03 7.82 -2.39 -0.02 0.01 16 42 H 0.38 -1.45 8.70 -74.06 -0.64 -2.10 16 43 H -0.30 -0.98 7.11 99.48 0.71 -0.27 16 44 H -0.25 1.46 6.68 99.48 0.66 2.13 16 45 H 0.16 -1.13 3.16 -2.91 -0.01 -1.14 16 46 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.10 -0.22 7.90 -2.39 -0.02 -0.24 16 Total: 0.00 -24.70 382.39 0.51 -24.20 By element: Atomic # 1 Polarization: -9.47 SS G_CDS: -0.26 Total: -9.73 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 5.79 Total: 11.10 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -2.35 Total: -2.89 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -4.74 Total: -21.02 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.07 Total: -1.66 kcal Total: -24.70 0.51 -24.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_12297780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.804 kcal (2) G-P(sol) polarization free energy of solvation -24.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds