Wall clock time and date at job start Sat Mar 6 2021 20:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 114.00060 * 2 1 4 4 C 1.52997 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.84957 * 316.19380 * 4 3 2 6 6 C 1.53783 * 113.61558 * 87.50288 * 4 3 2 7 7 C 1.53779 * 87.08117 * 139.98215 * 6 4 3 8 8 H 1.08994 * 113.69487 * 89.12872 * 7 6 4 9 9 N 1.46500 * 113.61393 * 220.02228 * 7 6 4 10 10 C 1.34781 * 119.99902 * 252.49893 * 9 7 6 11 11 O 1.21280 * 119.99934 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00011 * 179.97438 * 10 9 7 13 13 C 1.50705 * 109.47179 * 179.97438 * 12 10 9 14 14 C 1.38229 * 120.00163 * 89.99561 * 13 12 10 15 15 C 1.38232 * 119.99982 * 179.97438 * 14 13 12 16 16 C 1.38230 * 120.00120 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00069 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.47055 * 300.00206 * 17 16 15 19 19 Si 1.86304 * 109.46911 * 180.02562 * 17 16 15 20 20 C 1.38232 * 119.99842 * 0.27213 * 16 15 14 21 21 C 1.38232 * 119.99783 * 269.97819 * 13 12 10 22 22 C 1.53780 * 113.61183 * 184.99998 * 4 3 2 23 23 H 1.08994 * 109.47138 * 299.99860 * 1 2 3 24 24 H 1.09006 * 109.46853 * 60.00511 * 1 2 3 25 25 H 1.09006 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46709 * 59.99829 * 3 2 1 27 27 H 1.08996 * 109.46636 * 300.00152 * 3 2 1 28 28 H 1.09001 * 113.61209 * 25.42690 * 6 4 3 29 29 H 1.09007 * 113.61166 * 254.53099 * 6 4 3 30 30 H 0.96996 * 120.00129 * 72.49002 * 9 7 6 31 31 H 1.09000 * 109.47286 * 59.99349 * 12 10 9 32 32 H 1.09004 * 109.47378 * 299.99665 * 12 10 9 33 33 H 1.08008 * 119.99929 * 359.97438 * 14 13 12 34 34 H 1.08004 * 119.99738 * 180.02562 * 15 14 13 35 35 H 1.09002 * 109.47152 * 60.00014 * 17 16 15 36 36 H 0.96703 * 114.00193 * 180.02562 * 18 17 16 37 37 H 1.48495 * 110.00011 * 60.00027 * 19 17 16 38 38 H 1.48509 * 109.99497 * 181.32041 * 19 17 16 39 39 H 1.08001 * 120.00311 * 179.72122 * 20 16 15 40 40 H 1.08004 * 120.00299 * 359.97438 * 21 13 12 41 41 H 1.09002 * 113.61225 * 105.46943 * 22 4 3 42 42 H 1.08991 * 113.61347 * 334.56597 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8999 0.4288 0.6963 6 6 4.1453 1.0746 -1.4068 7 6 5.2680 1.9992 -0.9071 8 1 6.1077 1.4668 -0.4607 9 7 5.6873 2.9987 -1.8927 10 6 6.8767 2.8744 -2.5144 11 8 7.6000 1.9354 -2.2575 12 6 7.3078 3.9023 -3.5286 13 6 8.6649 3.5344 -4.0709 14 6 8.7672 2.7268 -5.1880 15 6 10.0120 2.3899 -5.6857 16 6 11.1546 2.8611 -5.0665 17 6 12.5117 2.4933 -5.6088 18 8 12.6659 1.0729 -5.5833 19 14 13.8341 3.2799 -4.5584 20 6 11.0524 3.6645 -3.9463 21 6 9.8075 4.0050 -3.4512 22 6 4.2603 2.5354 0.1235 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.5273 1.5199 -2.1865 29 1 4.4862 0.0700 -1.6576 30 1 5.1089 3.7498 -2.0979 31 1 7.3600 4.8819 -3.0535 32 1 6.5860 3.9324 -4.3448 33 1 7.8744 2.3591 -5.6721 34 1 10.0919 1.7593 -6.5588 35 1 12.6020 2.8502 -6.6348 36 1 13.5186 0.7637 -5.9187 37 1 13.7217 2.8009 -3.1573 38 1 15.1766 2.9509 -5.1015 39 1 11.9451 4.0289 -3.4599 40 1 9.7276 4.6366 -2.5788 41 1 4.6940 2.7102 1.1081 42 1 3.6738 3.3800 -0.2378 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_12335836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:47:09 Heat of formation + Delta-G solvation = -64.447996 kcal Electronic energy + Delta-G solvation = -22492.420003 eV Core-core repulsion = 19018.750705 eV Total energy + Delta-G solvation = -3473.669298 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.151 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38520 -40.52829 -39.57062 -38.22671 -37.75715 -34.64988 -34.04897 -31.93792 -30.27764 -29.22413 -26.98116 -26.63650 -25.74372 -23.81289 -23.48640 -21.95559 -21.40558 -20.54966 -18.60504 -18.05592 -17.86915 -17.43832 -17.08247 -16.93295 -16.80908 -16.26236 -16.09752 -15.79450 -15.63278 -15.25138 -14.78660 -14.66894 -14.38213 -14.04776 -13.97064 -13.45733 -13.41254 -13.22088 -13.18205 -13.07692 -12.79965 -12.40905 -12.26763 -12.07240 -11.91108 -11.75722 -11.65415 -11.40970 -10.94881 -10.60099 -10.53841 -10.02083 -9.87149 -9.58510 -4.97268 0.23657 0.45775 1.27211 1.56502 1.63501 1.92722 2.18143 2.73039 2.84748 3.39111 3.46455 3.60613 3.65185 3.80048 3.86003 3.89438 3.90917 4.04848 4.06423 4.32059 4.32524 4.38099 4.45803 4.47940 4.48958 4.54721 4.59275 4.63423 4.70929 4.72904 4.78661 4.81198 4.84339 5.00572 5.02652 5.06708 5.09151 5.28781 5.38017 5.54340 5.59035 5.59473 6.01931 6.23679 6.55873 6.59067 7.30111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.070 3.930 4 C -0.109 4.109 5 H 0.088 0.912 6 C -0.143 4.143 7 C 0.117 3.883 8 H 0.088 0.912 9 N -0.707 5.707 10 C 0.510 3.490 11 O -0.585 6.585 12 C -0.096 4.096 13 C -0.073 4.073 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.092 4.092 17 C -0.089 4.089 18 O -0.561 6.561 19 Si 0.769 3.231 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.118 4.118 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.420 0.580 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.394 0.606 37 H -0.306 1.306 38 H -0.283 1.283 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 8.658 -1.280 9.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.006 4.006 4 C -0.128 4.128 5 H 0.107 0.893 6 C -0.182 4.182 7 C 0.012 3.988 8 H 0.106 0.894 9 N -0.359 5.359 10 C 0.298 3.702 11 O -0.465 6.465 12 C -0.135 4.135 13 C -0.073 4.073 14 C -0.135 4.135 15 C -0.128 4.128 16 C -0.092 4.092 17 C -0.197 4.197 18 O -0.371 6.371 19 Si 0.675 3.325 20 C -0.143 4.143 21 C -0.128 4.128 22 C -0.156 4.156 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.258 0.742 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.114 0.886 36 H 0.244 0.756 37 H -0.234 1.234 38 H -0.210 1.210 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.102 0.898 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.075 7.751 -0.361 8.764 hybrid contribution 0.018 -1.281 -0.499 1.374 sum -4.056 6.470 -0.859 7.684 Atomic orbital electron populations 1.22887 0.79746 1.03528 1.00883 1.87865 1.21210 1.29418 1.95613 1.22633 0.92447 0.84242 1.01270 1.22310 0.93456 0.99161 0.97888 0.89331 1.23524 0.97487 0.99803 0.97378 1.22373 0.95562 0.90694 0.90194 0.89407 1.45873 1.19628 1.28596 1.41797 1.21163 0.80884 0.86392 0.81720 1.90754 1.54782 1.35337 1.65610 1.20772 0.94702 0.99280 0.98781 1.19604 0.95021 0.97515 0.95168 1.21251 0.97855 0.97598 0.96813 1.21098 0.92189 0.98997 1.00475 1.19506 0.94317 0.98842 0.96574 1.25084 1.01884 0.85267 1.07459 1.86566 1.41926 1.20653 1.87958 0.94211 0.73755 0.89509 0.75070 1.21128 0.98537 0.99090 0.95578 1.21228 0.91528 1.00293 0.99724 1.23283 0.95879 0.96805 0.99601 0.93098 0.93103 0.89294 0.92007 0.91854 0.88460 0.93074 0.74233 0.84495 0.85059 0.84910 0.85858 0.88586 0.75574 1.23440 1.21012 0.84383 0.83779 0.89760 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.88 10.70 -148.98 -1.59 -3.47 16 3 C 0.07 -0.10 5.78 71.98 0.42 0.32 16 4 C -0.11 0.12 4.01 -10.27 -0.04 0.07 16 5 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 6 C -0.14 -0.07 7.43 31.12 0.23 0.16 16 7 C 0.12 -0.01 4.24 45.52 0.19 0.18 16 8 H 0.09 0.54 7.46 -2.39 -0.02 0.52 16 9 N -0.71 2.28 5.35 -440.04 -2.36 -0.07 16 10 C 0.51 1.46 7.82 87.65 0.69 2.14 16 11 O -0.59 -8.59 15.63 -3.03 -0.05 -8.64 16 12 C -0.10 0.40 5.83 29.10 0.17 0.57 16 13 C -0.07 -0.23 4.37 -19.87 -0.09 -0.32 16 14 C -0.12 -0.61 9.70 22.27 0.22 -0.40 16 15 C -0.11 -0.80 9.61 22.27 0.21 -0.58 16 16 C -0.09 -0.62 5.42 -19.87 -0.11 -0.73 16 17 C -0.09 -0.28 2.81 71.24 0.20 -0.08 16 18 O -0.56 -3.72 12.74 -148.98 -1.90 -5.62 16 19 Si 0.77 0.77 29.79 68.60 2.04 2.81 16 20 C -0.13 -0.62 8.67 22.27 0.19 -0.43 16 21 C -0.11 -0.38 9.70 22.27 0.22 -0.17 16 22 C -0.12 0.64 7.39 31.12 0.23 0.87 16 23 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 25 H 0.09 -0.19 8.14 -2.38 -0.02 -0.21 16 26 H 0.06 -0.23 8.14 -2.39 -0.02 -0.24 16 27 H 0.06 -0.27 7.84 -2.39 -0.02 -0.28 16 28 H 0.10 -0.20 7.90 -2.39 -0.02 -0.22 16 29 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.42 -4.58 8.73 -92.71 -0.81 -5.39 16 31 H 0.14 -1.42 8.08 -2.39 -0.02 -1.44 16 32 H 0.13 -1.23 8.09 -2.38 -0.02 -1.25 16 33 H 0.13 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.12 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.10 -0.13 7.96 -2.39 -0.02 -0.15 16 36 H 0.39 -0.82 8.74 -74.05 -0.65 -1.47 16 37 H -0.31 -2.88 7.11 99.48 0.71 -2.18 16 38 H -0.28 -1.21 7.11 99.48 0.71 -0.50 16 39 H 0.14 0.14 4.88 -2.91 -0.01 0.13 16 40 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 41 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.11 -1.16 8.08 -2.39 -0.02 -1.18 16 Total: 0.00 -25.50 351.18 -0.27 -25.77 By element: Atomic # 1 Polarization: -13.21 SS G_CDS: -0.40 Total: -13.61 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 3.98 Total: 2.83 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -2.36 Total: -0.07 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -3.54 Total: -17.73 kcal Atomic # 14 Polarization: 0.77 SS G_CDS: 2.04 Total: 2.81 kcal Total: -25.50 -0.27 -25.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_12335836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.673 kcal (2) G-P(sol) polarization free energy of solvation -25.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds