Wall clock time and date at job start Sat Mar 6 2021 20:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00017 * 2 1 4 4 C 1.53002 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.90841 * 43.74978 * 4 3 2 6 6 C 1.53778 * 113.61516 * 175.00256 * 4 3 2 7 7 C 1.53784 * 87.08211 * 139.98276 * 6 4 3 8 8 H 1.08996 * 113.61332 * 89.20136 * 7 6 4 9 9 N 1.46498 * 113.61171 * 220.01904 * 7 6 4 10 10 C 1.34779 * 120.00073 * 204.99625 * 9 7 6 11 11 O 1.21553 * 119.99596 * 0.02562 * 10 9 7 12 12 C 1.47857 * 120.00119 * 180.02562 * 10 9 7 13 13 C 1.39570 * 120.11451 * 359.97438 * 12 10 9 14 14 C 1.38020 * 119.99089 * 180.02562 * 13 12 10 15 15 C 1.38226 * 120.20963 * 359.72337 * 14 13 12 16 16 C 1.38949 * 120.22677 * 0.56023 * 15 14 13 17 17 N 1.40231 * 119.99029 * 179.72215 * 16 15 14 18 18 C 1.36567 * 125.66777 * 114.68251 * 17 16 15 19 19 C 1.50697 * 125.90046 * 0.06947 * 18 17 16 20 20 C 1.34849 * 108.19770 * 179.75484 * 18 17 16 21 21 C 1.40936 * 107.46935 * 0.43084 * 20 18 17 22 22 C 1.50706 * 126.27037 * 179.82930 * 21 20 18 23 23 O 1.42901 * 109.47017 * 254.69229 * 22 21 20 24 24 Si 1.86301 * 109.46932 * 14.68852 * 22 21 20 25 25 C 1.34850 * 107.46541 * 359.56723 * 21 20 18 26 26 C 1.50707 * 125.89893 * 180.28442 * 25 21 20 27 27 C 1.38543 * 120.01305 * 359.43872 * 16 15 14 28 28 C 1.53781 * 113.61326 * 272.50071 * 4 3 2 29 29 H 1.08993 * 109.47151 * 299.99540 * 1 2 3 30 30 H 1.08997 * 109.47268 * 60.00088 * 1 2 3 31 31 H 1.09004 * 109.46734 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46997 * 60.00323 * 3 2 1 33 33 H 1.08997 * 109.47243 * 300.00043 * 3 2 1 34 34 H 1.09000 * 113.61518 * 25.42706 * 6 4 3 35 35 H 1.09004 * 113.68928 * 254.53816 * 6 4 3 36 36 H 0.97005 * 120.00309 * 25.00075 * 9 7 6 37 37 H 1.08008 * 120.00847 * 0.04798 * 13 12 10 38 38 H 1.08001 * 119.89382 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.88696 * 180.29281 * 15 14 13 40 40 H 1.08994 * 109.47486 * 90.00156 * 19 18 17 41 41 H 1.09003 * 109.47076 * 210.00473 * 19 18 17 42 42 H 1.08999 * 109.46961 * 329.99609 * 19 18 17 43 43 H 1.08002 * 126.26921 * 180.27937 * 20 18 17 44 44 H 1.08996 * 109.47392 * 134.68705 * 22 21 20 45 45 H 0.96701 * 114.00441 * 59.99706 * 23 22 21 46 46 H 1.48502 * 109.99992 * 58.67854 * 24 22 21 47 47 H 1.48496 * 109.99919 * 180.02562 * 24 22 21 48 48 H 1.09001 * 109.47274 * 89.97797 * 26 25 21 49 49 H 1.08998 * 109.46690 * 209.97470 * 26 25 21 50 50 H 1.09000 * 109.47280 * 329.97451 * 26 25 21 51 51 H 1.07995 * 120.10931 * 180.29876 * 27 16 15 52 52 H 1.08999 * 113.61873 * 105.47140 * 28 4 3 53 53 H 1.09001 * 113.61612 * 334.56444 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9015 0.4280 -0.6934 6 6 4.2605 2.5353 -0.1220 7 6 5.2672 1.9994 0.9096 8 1 6.1073 1.4669 0.4639 9 7 5.6857 2.9993 1.8952 10 6 6.8746 2.8752 2.5179 11 8 7.5997 1.9340 2.2613 12 6 7.2968 3.8840 3.5130 13 6 6.4663 4.9660 3.8090 14 6 6.8631 5.9064 4.7380 15 6 8.0795 5.7779 5.3818 16 6 8.9159 4.7075 5.0897 17 7 10.1514 4.5851 5.7416 18 6 10.5012 3.5855 6.6039 19 6 9.6286 2.4278 7.0153 20 6 11.7648 3.8096 7.0181 21 6 12.2094 4.9946 6.3980 22 6 13.5623 5.6364 6.5681 23 8 13.4399 6.7930 7.3984 24 14 14.7301 4.4220 7.3632 25 6 11.2045 5.4460 5.6202 26 6 11.2381 6.6860 4.7643 27 6 8.5268 3.7580 4.1588 28 6 4.1441 1.0750 1.4086 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.6737 3.3801 0.2384 35 1 4.6954 2.7111 -1.1060 36 1 5.1072 3.7506 2.0997 37 1 5.5129 5.0671 3.3114 38 1 6.2190 6.7428 4.9661 39 1 8.3827 6.5143 6.1113 40 1 9.7800 1.5961 6.3273 41 1 9.8918 2.1158 8.0261 42 1 8.5829 2.7343 6.9905 43 1 12.3315 3.1951 7.7019 44 1 13.9509 5.9288 5.5926 45 1 13.0989 6.6072 8.2840 46 1 14.8413 3.2011 6.5251 47 1 16.0678 5.0430 7.5369 48 1 11.6075 6.4319 3.7708 49 1 10.2326 7.0988 4.6834 50 1 11.8984 7.4240 5.2197 51 1 9.1736 2.9228 3.9341 52 1 4.4848 0.0706 1.6601 53 1 3.5256 1.5207 2.1877 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_12335854.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:47:19 Heat of formation + Delta-G solvation = -7.223161 kcal Electronic energy + Delta-G solvation = -33062.847659 eV Core-core repulsion = 28674.942627 eV Total energy + Delta-G solvation = -4387.905032 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.193 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.91155 -41.56870 -40.28685 -39.24621 -38.19993 -37.67606 -35.09736 -34.09495 -33.72254 -32.35621 -30.56273 -30.17217 -29.56671 -27.24418 -27.02608 -26.68109 -25.48489 -24.74657 -23.71091 -23.12927 -21.90675 -21.13980 -20.82252 -20.15995 -18.72804 -17.91719 -17.52365 -17.41707 -17.35949 -17.20582 -16.88760 -16.73749 -16.26874 -15.97745 -15.90210 -15.76351 -15.39348 -15.23933 -15.03251 -14.86942 -14.68496 -14.35461 -14.19754 -14.08248 -14.03519 -13.64046 -13.48945 -13.47028 -13.30238 -13.21962 -13.18079 -12.99641 -12.92519 -12.70618 -12.52091 -12.42631 -12.15445 -12.09752 -11.80401 -11.68766 -11.44006 -11.18502 -10.59832 -10.48310 -10.35271 -10.28785 -10.07570 -9.53283 -8.85639 -4.95320 -0.46305 -0.06871 1.06006 1.42391 1.59701 1.65824 1.72416 1.82143 1.99033 2.03986 2.55486 2.80910 3.39121 3.47379 3.58956 3.65315 3.66085 3.69047 3.76870 3.87136 3.87629 3.91895 3.96500 4.08611 4.17209 4.29109 4.32150 4.37227 4.40471 4.42853 4.48108 4.52994 4.57399 4.59225 4.63084 4.64086 4.65840 4.68456 4.71932 4.75525 4.79732 4.85254 4.95677 4.97112 4.99423 5.01189 5.03299 5.05972 5.11889 5.15062 5.19560 5.34362 5.47653 5.54347 5.97220 6.13220 6.24052 6.37526 6.44777 6.86900 7.03723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.070 3.930 4 C -0.107 4.107 5 H 0.091 0.909 6 C -0.118 4.118 7 C 0.115 3.885 8 H 0.094 0.906 9 N -0.695 5.695 10 C 0.557 3.443 11 O -0.582 6.582 12 C -0.133 4.133 13 C -0.064 4.064 14 C -0.099 4.099 15 C -0.084 4.084 16 C 0.097 3.903 17 N -0.406 5.406 18 C 0.012 3.988 19 C -0.083 4.083 20 C -0.194 4.194 21 C -0.206 4.206 22 C -0.035 4.035 23 O -0.557 6.557 24 Si 0.785 3.215 25 C 0.034 3.966 26 C -0.085 4.085 27 C -0.068 4.068 28 C -0.142 4.142 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.418 0.582 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.144 0.856 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.164 0.836 44 H 0.095 0.905 45 H 0.392 0.608 46 H -0.300 1.300 47 H -0.298 1.298 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.088 0.912 51 H 0.113 0.887 52 H 0.055 0.945 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.674 5.205 1.840 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.006 4.006 4 C -0.126 4.126 5 H 0.109 0.891 6 C -0.156 4.156 7 C 0.010 3.990 8 H 0.112 0.888 9 N -0.347 5.347 10 C 0.345 3.655 11 O -0.463 6.463 12 C -0.137 4.137 13 C -0.082 4.082 14 C -0.117 4.117 15 C -0.103 4.103 16 C 0.008 3.992 17 N -0.081 5.081 18 C -0.096 4.096 19 C -0.140 4.140 20 C -0.217 4.217 21 C -0.213 4.213 22 C -0.146 4.146 23 O -0.365 6.365 24 Si 0.692 3.308 25 C -0.075 4.075 26 C -0.142 4.142 27 C -0.088 4.088 28 C -0.181 4.181 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.257 0.743 37 H 0.188 0.812 38 H 0.194 0.806 39 H 0.162 0.838 40 H 0.085 0.915 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.181 0.819 44 H 0.112 0.888 45 H 0.242 0.758 46 H -0.227 1.227 47 H -0.227 1.227 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.107 0.893 51 H 0.131 0.869 52 H 0.074 0.926 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.400 4.242 0.890 9.452 hybrid contribution -0.204 0.134 -0.679 0.721 sum -8.604 4.376 0.212 9.655 Atomic orbital electron populations 1.22883 0.79751 1.03523 1.00879 1.87863 1.21185 1.29388 1.95614 1.22632 0.92389 0.84282 1.01335 1.22295 0.93490 0.99033 0.97829 0.89086 1.23307 0.95747 0.97021 0.99556 1.22530 0.96004 0.90501 0.89943 0.88838 1.45739 1.18841 1.28686 1.41431 1.18518 0.81559 0.84648 0.80776 1.90794 1.54903 1.34781 1.65813 1.19739 0.96144 0.97849 0.99947 1.21798 0.99423 0.91072 0.95946 1.21470 0.95366 1.00004 0.94884 1.21669 0.93580 0.96267 0.98817 1.17671 0.86543 0.98254 0.96744 1.41523 1.09939 1.21313 1.35367 1.20806 0.97053 0.93908 0.97882 1.20367 0.97392 0.93111 1.03137 1.20841 0.94891 0.99432 1.06528 1.19795 0.97143 0.99518 1.04820 1.24384 0.98143 0.94200 0.97824 1.86412 1.88485 1.32312 1.29266 0.93633 0.75075 0.74391 0.87653 1.20582 0.87531 0.95892 1.03535 1.20376 1.03557 0.92540 0.97744 1.21112 0.96053 0.98203 0.93420 1.23534 0.97157 0.99893 0.97500 0.93075 0.93135 0.89319 0.91780 0.91980 0.86670 0.89539 0.74259 0.81195 0.80565 0.83813 0.91523 0.87968 0.92044 0.81883 0.88779 0.75805 1.22749 1.22651 0.91540 0.90790 0.89332 0.86899 0.92624 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 11.01 113.37 1.25 1.19 16 2 O -0.42 -1.32 10.70 -148.98 -1.59 -2.92 16 3 C 0.07 -0.20 5.78 71.98 0.42 0.22 16 4 C -0.11 0.29 4.01 -10.27 -0.04 0.25 16 5 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 6 C -0.12 0.80 7.39 31.12 0.23 1.03 16 7 C 0.12 -0.14 4.24 45.52 0.19 0.05 16 8 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 9 N -0.70 2.01 5.31 -442.89 -2.35 -0.34 16 10 C 0.56 2.73 7.77 86.79 0.67 3.40 16 11 O -0.58 -8.76 15.94 -3.88 -0.06 -8.82 16 12 C -0.13 -0.15 5.87 -20.11 -0.12 -0.27 16 13 C -0.06 0.46 9.54 22.54 0.21 0.68 16 14 C -0.10 0.79 10.03 22.22 0.22 1.02 16 15 C -0.08 0.23 8.79 22.44 0.20 0.42 16 16 C 0.10 0.30 4.82 38.04 0.18 0.49 16 17 N -0.41 -2.35 2.79 -320.37 -0.89 -3.25 16 18 C 0.01 0.06 6.81 41.04 0.28 0.34 16 19 C -0.08 -0.12 9.93 71.23 0.71 0.59 16 20 C -0.19 -0.85 9.27 22.15 0.21 -0.65 16 21 C -0.21 -1.18 5.36 -19.98 -0.11 -1.28 16 22 C -0.03 -0.14 2.50 71.24 0.18 0.04 16 23 O -0.56 -1.82 12.88 -148.98 -1.92 -3.74 16 24 Si 0.79 1.89 30.81 68.60 2.11 4.00 16 25 C 0.03 0.21 6.81 41.05 0.28 0.49 16 26 C -0.08 -0.24 9.87 71.24 0.70 0.46 16 27 C -0.07 -0.37 9.26 22.65 0.21 -0.16 16 28 C -0.14 0.16 7.43 31.12 0.23 0.39 16 29 H 0.05 -0.23 8.14 -2.39 -0.02 -0.24 16 30 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.09 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H 0.06 -0.37 7.84 -2.39 -0.02 -0.39 16 33 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.12 -1.35 8.08 -2.39 -0.02 -1.37 16 35 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.42 -4.50 6.76 -92.70 -0.63 -5.12 16 37 H 0.17 -2.58 6.40 -2.91 -0.02 -2.60 16 38 H 0.18 -2.58 8.06 -2.91 -0.02 -2.61 16 39 H 0.14 -0.62 8.06 -2.91 -0.02 -0.64 16 40 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.06 0.09 7.83 -2.39 -0.02 0.07 16 43 H 0.16 -0.08 6.58 -2.91 -0.02 -0.10 16 44 H 0.09 0.54 7.96 -2.39 -0.02 0.52 16 45 H 0.39 -1.69 8.70 -74.06 -0.64 -2.34 16 46 H -0.30 -2.74 7.11 99.48 0.71 -2.03 16 47 H -0.30 -2.59 7.11 99.48 0.71 -1.89 16 48 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.07 0.01 6.86 -2.39 -0.02 0.00 16 50 H 0.09 0.25 7.87 -2.39 -0.02 0.23 16 51 H 0.11 1.22 7.65 -2.91 -0.02 1.19 16 52 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 53 H 0.10 -0.37 7.89 -2.39 -0.02 -0.39 16 Total: 0.00 -25.98 434.56 1.10 -24.89 By element: Atomic # 1 Polarization: -18.23 SS G_CDS: -0.31 Total: -18.54 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.11 Total: 8.71 kcal Atomic # 7 Polarization: -0.34 SS G_CDS: -3.24 Total: -3.58 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -3.58 Total: -15.48 kcal Atomic # 14 Polarization: 1.89 SS G_CDS: 2.11 Total: 4.00 kcal Total: -25.98 1.10 -24.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_12335854.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.662 kcal (2) G-P(sol) polarization free energy of solvation -25.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds