Wall clock time and date at job start Sat Mar 6 2021 20:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00221 * 2 1 4 4 C 1.52990 * 109.47168 * 180.02562 * 3 2 1 5 5 H 1.09000 * 112.90908 * 43.75570 * 4 3 2 6 6 C 1.53786 * 113.61464 * 175.00198 * 4 3 2 7 7 C 1.53781 * 87.17350 * 140.02626 * 6 4 3 8 8 H 1.08999 * 113.61567 * 89.07405 * 7 6 4 9 9 N 1.46493 * 113.61552 * 219.97837 * 7 6 4 10 10 C 1.34781 * 120.00279 * 205.00255 * 9 7 6 11 11 O 1.21584 * 119.99687 * 359.97438 * 10 9 7 12 12 C 1.47578 * 120.00115 * 180.02562 * 10 9 7 13 13 C 1.40201 * 120.19008 * 179.72441 * 12 10 9 14 14 N 1.39669 * 120.15493 * 359.97225 * 13 12 10 15 15 C 1.36650 * 125.67816 * 89.69660 * 14 13 12 16 16 C 1.50695 * 125.90338 * 359.97438 * 15 14 13 17 17 C 1.34810 * 108.19151 * 179.82766 * 15 14 13 18 18 C 1.40992 * 107.48444 * 0.42482 * 17 15 14 19 19 C 1.50702 * 126.25639 * 179.75274 * 18 17 15 20 20 O 1.42903 * 109.47438 * 254.97488 * 19 18 17 21 21 Si 1.86301 * 109.46897 * 14.97665 * 19 18 17 22 22 C 1.34804 * 107.48659 * 359.73610 * 18 17 15 23 23 C 1.50704 * 125.90150 * 179.97438 * 22 18 17 24 24 C 1.38760 * 119.68465 * 179.69773 * 13 12 10 25 25 C 1.38063 * 120.07601 * 0.60025 * 24 13 12 26 26 C 1.38532 * 120.39438 * 359.67269 * 25 24 13 27 27 C 1.37832 * 120.30975 * 0.02562 * 26 25 24 28 28 C 1.53781 * 87.08070 * 334.52830 * 7 6 4 29 29 H 1.08996 * 109.47448 * 59.99306 * 1 2 3 30 30 H 1.09000 * 109.47380 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46818 * 299.99388 * 1 2 3 32 32 H 1.09007 * 109.46427 * 60.00530 * 3 2 1 33 33 H 1.08994 * 109.47177 * 300.00838 * 3 2 1 34 34 H 1.09002 * 113.61357 * 25.43543 * 6 4 3 35 35 H 1.09002 * 113.61608 * 254.61705 * 6 4 3 36 36 H 0.97006 * 120.00380 * 24.99977 * 9 7 6 37 37 H 1.09001 * 109.47292 * 90.00424 * 16 15 14 38 38 H 1.09007 * 109.47139 * 209.99956 * 16 15 14 39 39 H 1.08997 * 109.47390 * 330.00076 * 16 15 14 40 40 H 1.07998 * 126.25660 * 180.15673 * 17 15 14 41 41 H 1.09000 * 109.46786 * 134.97281 * 19 18 17 42 42 H 0.96696 * 113.99428 * 59.99949 * 20 19 18 43 43 H 1.48497 * 110.00037 * 58.68308 * 21 19 18 44 44 H 1.48502 * 109.99875 * 179.97438 * 21 19 18 45 45 H 1.09001 * 109.47027 * 270.01810 * 23 22 18 46 46 H 1.08996 * 109.47244 * 30.02547 * 23 22 18 47 47 H 1.08999 * 109.46897 * 150.02383 * 23 22 18 48 48 H 1.08005 * 119.96310 * 180.29274 * 24 13 12 49 49 H 1.07998 * 119.80406 * 179.70037 * 25 24 13 50 50 H 1.07995 * 119.84693 * 180.02562 * 26 25 24 51 51 H 1.07992 * 120.04053 * 179.97438 * 27 26 25 52 52 H 1.09005 * 113.61471 * 139.98321 * 28 7 6 53 53 H 1.09003 * 113.61469 * 270.88099 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9008 0.4283 -0.6953 6 6 4.2603 2.5353 -0.1235 7 6 5.2698 2.0008 0.9062 8 1 6.1085 1.4671 0.4590 9 7 5.6900 3.0014 1.8901 10 6 6.8805 2.8785 2.5100 11 8 7.6054 1.9369 2.2529 12 6 7.3036 3.8863 3.5017 13 6 8.5385 3.7593 4.1532 14 7 9.3746 2.6777 3.8672 15 6 10.3335 2.6470 2.8941 16 6 10.6687 3.7711 1.9480 17 6 10.9300 1.4386 2.9289 18 6 10.3130 0.6910 3.9527 19 6 10.6508 -0.7226 4.3514 20 8 9.6379 -1.6083 3.8701 21 14 12.2941 -1.1997 3.6148 22 6 9.3660 1.4719 4.5101 23 6 8.4549 1.0821 5.6455 24 6 8.9286 4.7163 5.0791 25 6 8.0978 5.7811 5.3654 26 6 6.8744 5.9068 4.7279 27 6 6.4735 4.9689 3.8008 28 6 4.1485 1.0759 1.4084 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.6739 3.3801 0.2379 35 1 4.6928 2.7108 -1.1085 36 1 5.1116 3.7525 2.0956 37 1 11.4413 4.4001 2.3902 38 1 11.0314 3.3579 1.0068 39 1 9.7760 4.3684 1.7626 40 1 11.7309 1.1029 2.2868 41 1 10.7062 -0.7902 5.4379 42 1 9.5329 -1.6002 2.9089 43 1 13.3505 -0.2667 4.0827 44 1 12.6390 -2.5915 4.0011 45 1 7.5461 0.6335 5.2444 46 1 8.9624 0.3626 6.2880 47 1 8.1973 1.9685 6.2252 48 1 9.8811 4.6254 5.5801 49 1 8.4038 6.5208 6.0904 50 1 6.2317 6.7435 4.9583 51 1 5.5187 5.0708 3.3067 52 1 4.4904 0.0718 1.6597 53 1 3.5315 1.5216 2.1886 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_12335856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:47:22 Heat of formation + Delta-G solvation = 5.286522 kcal Electronic energy + Delta-G solvation = -34986.669849 eV Core-core repulsion = 30599.307278 eV Total energy + Delta-G solvation = -4387.362571 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.193 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.85103 -41.29738 -40.17132 -39.13759 -38.15079 -37.65724 -34.90939 -34.08426 -33.58336 -32.31830 -30.43927 -30.12839 -29.57558 -27.26577 -26.96345 -26.63347 -25.33732 -24.58242 -23.75681 -23.05849 -21.66183 -21.07599 -20.70225 -20.19555 -18.81407 -17.88374 -17.69478 -17.47623 -17.27769 -16.88118 -16.70000 -16.39918 -16.16915 -16.01981 -15.74900 -15.71903 -15.49356 -15.20352 -14.91408 -14.72996 -14.51243 -14.35927 -14.18509 -14.02129 -13.99310 -13.57199 -13.47453 -13.39419 -13.25088 -13.21237 -13.09546 -12.96306 -12.87601 -12.72488 -12.45506 -12.38186 -12.11088 -12.06723 -11.74803 -11.66080 -11.41249 -10.94409 -10.59572 -10.33061 -10.27296 -10.09946 -9.95648 -9.51273 -8.66762 -4.93209 -0.41121 0.03861 1.21819 1.44658 1.68769 1.76750 1.90803 1.96372 2.01135 2.06539 2.60927 2.81504 3.42767 3.55571 3.61629 3.63215 3.68981 3.77145 3.80910 3.88970 3.95662 4.04844 4.16813 4.19904 4.23390 4.30524 4.32207 4.37578 4.41202 4.47594 4.48432 4.51983 4.54916 4.59201 4.65638 4.67841 4.68520 4.70047 4.75512 4.78643 4.80344 4.84825 4.91864 4.99505 5.00644 5.04814 5.05620 5.17440 5.22422 5.25112 5.28136 5.45954 5.54470 5.63636 6.13616 6.24039 6.27912 6.46641 6.64245 6.81607 7.17072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.070 3.930 4 C -0.105 4.105 5 H 0.092 0.908 6 C -0.118 4.118 7 C 0.124 3.876 8 H 0.094 0.906 9 N -0.703 5.703 10 C 0.543 3.457 11 O -0.542 6.542 12 C -0.144 4.144 13 C 0.142 3.858 14 N -0.392 5.392 15 C 0.031 3.969 16 C -0.076 4.076 17 C -0.203 4.203 18 C -0.208 4.208 19 C -0.041 4.041 20 O -0.562 6.562 21 Si 0.785 3.215 22 C 0.048 3.952 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.078 4.078 26 C -0.107 4.107 27 C -0.075 4.075 28 C -0.142 4.142 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.412 0.588 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.155 0.845 41 H 0.093 0.907 42 H 0.388 0.612 43 H -0.290 1.290 44 H -0.298 1.298 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.132 0.868 49 H 0.162 0.838 50 H 0.170 0.830 51 H 0.163 0.837 52 H 0.052 0.948 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 10.034 -1.840 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.006 4.006 4 C -0.124 4.124 5 H 0.110 0.890 6 C -0.156 4.156 7 C 0.019 3.981 8 H 0.112 0.888 9 N -0.355 5.355 10 C 0.330 3.670 11 O -0.419 6.419 12 C -0.148 4.148 13 C 0.052 3.948 14 N -0.066 5.066 15 C -0.078 4.078 16 C -0.133 4.133 17 C -0.226 4.226 18 C -0.215 4.215 19 C -0.152 4.152 20 O -0.369 6.369 21 Si 0.692 3.308 22 C -0.062 4.062 23 C -0.130 4.130 24 C -0.144 4.144 25 C -0.097 4.097 26 C -0.124 4.124 27 C -0.094 4.094 28 C -0.181 4.181 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.251 0.749 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.172 0.828 41 H 0.110 0.890 42 H 0.236 0.764 43 H -0.217 1.217 44 H -0.226 1.226 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.150 0.850 49 H 0.180 0.820 50 H 0.188 0.812 51 H 0.180 0.820 52 H 0.071 0.929 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.883 9.080 -1.190 10.378 hybrid contribution -0.722 0.287 0.675 1.029 sum -5.604 9.366 -0.515 10.927 Atomic orbital electron populations 1.22881 0.79794 1.03521 1.00836 1.87867 1.21146 1.29326 1.95598 1.22622 0.92497 0.84292 1.01196 1.22326 0.93351 0.99042 0.97722 0.88999 1.23287 0.95841 0.96845 0.99658 1.22391 0.95715 0.90227 0.89739 0.88785 1.45758 1.19011 1.28656 1.42121 1.18463 0.81949 0.85285 0.81302 1.90900 1.53766 1.33162 1.64089 1.20274 0.95829 0.98372 1.00312 1.17840 0.90190 0.89050 0.97706 1.41016 1.27830 1.09891 1.27832 1.20547 0.93646 0.98724 0.94867 1.20275 1.01298 0.94452 0.97299 1.20648 1.05040 0.93960 1.02989 1.19625 1.02470 0.96919 1.02475 1.24513 1.02681 0.86682 1.01277 1.86388 1.59017 1.63031 1.28450 0.93447 0.72148 0.75131 0.90115 1.20199 1.01164 0.85401 0.99424 1.20157 0.97407 1.01243 0.94147 1.21456 1.01426 0.94287 0.97237 1.21674 0.93329 0.96296 0.98352 1.21688 0.96538 0.99473 0.94723 1.21635 0.99230 0.91606 0.96915 1.23555 0.97398 0.99811 0.97353 0.93071 0.89293 0.93214 0.92079 0.91924 0.87104 0.89514 0.74927 0.90290 0.89214 0.92911 0.82760 0.88999 0.76367 1.21679 1.22613 0.92452 0.90294 0.91813 0.84983 0.81998 0.81248 0.81981 0.92944 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.72 10.70 -148.98 -1.59 -3.31 16 3 C 0.07 -0.12 5.78 71.98 0.42 0.29 16 4 C -0.11 0.17 4.02 -10.18 -0.04 0.13 16 5 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 6 C -0.12 0.68 7.39 31.12 0.23 0.91 16 7 C 0.12 -0.04 4.24 45.52 0.19 0.16 16 8 H 0.09 0.49 7.47 -2.39 -0.02 0.47 16 9 N -0.70 1.11 5.31 -443.17 -2.35 -1.24 16 10 C 0.54 2.97 7.77 86.71 0.67 3.65 16 11 O -0.54 -7.39 13.28 -3.98 -0.05 -7.44 16 12 C -0.14 -0.28 5.89 -19.99 -0.12 -0.40 16 13 C 0.14 0.68 4.52 38.49 0.17 0.86 16 14 N -0.39 -3.61 1.45 -319.54 -0.46 -4.08 16 15 C 0.03 0.28 5.97 41.02 0.24 0.53 16 16 C -0.08 -0.27 10.09 71.23 0.72 0.45 16 17 C -0.20 -1.89 9.27 22.16 0.21 -1.68 16 18 C -0.21 -2.30 5.35 -19.98 -0.11 -2.41 16 19 C -0.04 -0.38 2.60 71.24 0.19 -0.19 16 20 O -0.56 -5.87 12.88 -148.98 -1.92 -7.79 16 21 Si 0.79 4.50 30.81 68.60 2.11 6.61 16 22 C 0.05 0.56 6.01 41.02 0.25 0.80 16 23 C -0.07 -0.65 9.87 71.24 0.70 0.06 16 24 C -0.13 -0.02 9.96 22.35 0.22 0.20 16 25 C -0.08 0.47 10.03 22.30 0.22 0.69 16 26 C -0.11 0.89 10.02 22.24 0.22 1.12 16 27 C -0.08 0.45 9.54 22.52 0.21 0.67 16 28 C -0.14 -0.07 7.44 31.21 0.23 0.16 16 29 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 32 H 0.06 -0.26 7.85 -2.38 -0.02 -0.28 16 33 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.11 -1.13 8.08 -2.39 -0.02 -1.15 16 35 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.41 -3.49 6.76 -92.70 -0.63 -4.12 16 37 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 39 H 0.05 0.23 7.83 -2.39 -0.02 0.21 16 40 H 0.16 0.70 6.59 -2.91 -0.02 0.68 16 41 H 0.09 0.91 7.50 -2.39 -0.02 0.89 16 42 H 0.39 1.80 8.70 -74.06 -0.64 1.15 16 43 H -0.29 -3.06 7.11 99.48 0.71 -2.35 16 44 H -0.30 -3.42 7.11 99.48 0.71 -2.71 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.63 7.50 -2.39 -0.02 0.61 16 47 H 0.06 0.41 7.83 -2.39 -0.02 0.39 16 48 H 0.13 0.02 8.06 -2.91 -0.02 0.00 16 49 H 0.16 -1.80 8.06 -2.91 -0.02 -1.82 16 50 H 0.17 -2.48 8.06 -2.91 -0.02 -2.50 16 51 H 0.16 -2.07 6.40 -2.91 -0.02 -2.09 16 52 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 53 H 0.09 -0.12 7.91 -2.39 -0.02 -0.14 16 Total: 0.00 -24.60 431.41 1.51 -23.09 By element: Atomic # 1 Polarization: -12.74 SS G_CDS: -0.31 Total: -13.04 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 6.09 Total: 7.20 kcal Atomic # 7 Polarization: -2.50 SS G_CDS: -2.82 Total: -5.32 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -3.57 Total: -18.54 kcal Atomic # 14 Polarization: 4.50 SS G_CDS: 2.11 Total: 6.61 kcal Total: -24.60 1.51 -23.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_12335856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.376 kcal (2) G-P(sol) polarization free energy of solvation -24.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds