Wall clock time and date at job start Sat Mar 6 2021 20:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47118 * 2 1 4 4 C 1.52999 * 109.47034 * 174.98145 * 3 2 1 5 5 C 1.53004 * 109.46659 * 294.97893 * 3 2 1 6 6 C 1.50699 * 109.46526 * 174.00199 * 5 3 2 7 7 O 1.21285 * 119.99907 * 116.02103 * 6 5 3 8 8 N 1.34773 * 120.00346 * 296.01017 * 6 5 3 9 9 C 1.46496 * 120.00438 * 185.08826 * 8 6 5 10 10 H 1.09008 * 112.85053 * 334.67415 * 9 8 6 11 11 C 1.53782 * 113.61652 * 105.86297 * 9 8 6 12 12 C 1.53956 * 87.01895 * 139.95510 * 11 9 8 13 13 H 1.08994 * 113.61262 * 89.20406 * 12 11 9 14 14 C 1.52999 * 113.66480 * 220.07032 * 12 11 9 15 15 O 1.42910 * 109.47238 * 272.56137 * 14 12 11 16 16 C 1.42896 * 114.00181 * 180.02562 * 15 14 12 17 17 C 1.53775 * 87.11234 * 334.64030 * 12 11 9 18 18 N 1.46501 * 109.47102 * 294.00082 * 5 3 2 19 19 C 1.36337 * 125.63425 * 295.25093 * 18 5 3 20 20 C 1.34857 * 108.21920 * 180.02562 * 19 18 5 21 21 C 1.40899 * 107.41205 * 359.77243 * 20 19 18 22 22 C 1.34853 * 107.41813 * 0.37786 * 21 20 19 23 23 C 1.50700 * 125.89119 * 179.88633 * 22 21 20 24 24 O 1.42893 * 109.47196 * 209.68770 * 23 22 21 25 25 Si 1.86296 * 109.46761 * 329.69179 * 23 22 21 26 26 H 1.09006 * 109.47152 * 305.02706 * 1 2 3 27 27 H 1.08994 * 109.47319 * 65.02560 * 1 2 3 28 28 H 1.08998 * 109.47257 * 185.03261 * 1 2 3 29 29 H 1.08999 * 109.46946 * 239.99556 * 2 1 3 30 30 H 1.09005 * 109.47171 * 119.99647 * 2 1 3 31 31 H 1.09000 * 109.47146 * 54.98082 * 3 2 1 32 32 H 1.08999 * 109.46993 * 171.13806 * 4 3 2 33 33 H 1.08998 * 109.46849 * 291.13853 * 4 3 2 34 34 H 1.08996 * 109.47175 * 51.13705 * 4 3 2 35 35 H 1.09000 * 109.47112 * 54.00440 * 5 3 2 36 36 H 0.97007 * 119.99922 * 5.09364 * 8 6 5 37 37 H 1.09003 * 113.61722 * 254.53311 * 11 9 8 38 38 H 1.09000 * 113.61120 * 25.43735 * 11 9 8 39 39 H 1.09000 * 109.47361 * 32.55854 * 14 12 11 40 40 H 1.08996 * 109.47349 * 152.56056 * 14 12 11 41 41 H 1.08999 * 109.47104 * 299.99857 * 16 15 14 42 42 H 1.09000 * 109.47441 * 59.99629 * 16 15 14 43 43 H 1.08999 * 109.47237 * 180.02562 * 16 15 14 44 44 H 1.09006 * 113.61578 * 270.81407 * 17 12 11 45 45 H 1.09003 * 113.61830 * 139.91081 * 17 12 11 46 46 H 1.07997 * 125.89611 * 0.06238 * 19 18 5 47 47 H 1.07994 * 126.29143 * 180.02562 * 20 19 18 48 48 H 1.07998 * 126.28722 * 180.23917 * 21 20 19 49 49 H 1.09003 * 109.46904 * 89.68776 * 23 22 21 50 50 H 0.96705 * 113.99774 * 59.99705 * 24 23 22 51 51 H 1.48498 * 110.00500 * 58.68177 * 25 23 22 52 52 H 1.48502 * 109.99573 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1262 5 6 1.6356 2.1263 -1.3076 6 6 2.0076 3.5854 -1.2473 7 8 2.8343 4.0327 -2.0138 8 7 1.4216 4.3934 -0.3417 9 6 1.6991 5.8318 -0.3552 10 1 2.6646 6.0725 -0.8002 11 6 0.5390 6.6779 -0.9059 12 6 0.8568 7.6927 0.2074 13 1 1.5911 8.4439 -0.0833 14 6 -0.3875 8.2992 0.8590 15 8 -0.8014 9.4486 0.1175 16 6 -1.9618 10.0941 0.6454 17 6 1.4567 6.5188 0.9991 18 7 2.3338 1.4903 -2.4276 19 6 3.6821 1.4965 -2.6296 20 6 3.9421 0.8104 -3.7611 21 6 2.7094 0.3598 -4.2736 22 6 1.7425 0.7948 -3.4403 23 6 0.2640 0.5491 -3.5977 24 8 -0.4634 1.6366 -3.0232 25 14 -0.1530 0.4104 -5.4081 26 1 -0.3634 0.5899 0.8416 27 1 -0.3633 0.4339 -0.9315 28 1 -0.3634 -1.0237 0.0901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6051 1.9817 0.8416 32 1 3.9412 2.4551 -0.0312 33 1 3.8473 1.1023 1.1218 34 1 3.9921 0.7770 -0.6221 35 1 0.5591 2.0314 -1.4495 36 1 0.8160 4.0225 0.3192 37 1 0.7166 7.0609 -1.9109 38 1 -0.4365 6.2036 -0.7988 39 1 -1.1906 7.5622 0.8647 40 1 -0.1555 8.5917 1.8830 41 1 -2.7976 9.3944 0.6471 42 1 -1.7620 10.4238 1.6650 43 1 -2.2113 10.9561 0.0267 44 1 0.7325 6.0009 1.6280 45 1 2.3740 6.7735 1.5299 46 1 4.4156 1.9688 -1.9930 47 1 4.9164 0.6349 -4.1926 48 1 2.5652 -0.2245 -5.1704 49 1 -0.0063 -0.3771 -3.0906 50 1 -0.2721 2.4944 -3.4266 51 1 0.6212 -0.6969 -6.0244 52 1 -1.6084 0.1686 -5.5769 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_12360566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:47:33 Heat of formation + Delta-G solvation = -30.176248 kcal Electronic energy + Delta-G solvation = -31641.878377 eV Core-core repulsion = 27610.344967 eV Total energy + Delta-G solvation = -4031.533409 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.209 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.89207 -41.11801 -39.75447 -38.23095 -37.86947 -37.59673 -34.62755 -33.02938 -31.52120 -30.60570 -29.82289 -28.16802 -26.89199 -26.56281 -26.01807 -24.70202 -23.57458 -22.04122 -21.66005 -21.43082 -20.82283 -20.20178 -18.67110 -18.23388 -17.66642 -17.23412 -16.89865 -16.83117 -16.75089 -16.35295 -15.97808 -15.80349 -15.39691 -15.28434 -15.21959 -14.75172 -14.73317 -14.38992 -14.32138 -14.07953 -13.92639 -13.71683 -13.48534 -13.43380 -13.20185 -13.17896 -12.94582 -12.83820 -12.39880 -12.24886 -12.20120 -12.07739 -11.98443 -11.85677 -11.83619 -11.66289 -11.61482 -11.38675 -11.03232 -10.59087 -10.56680 -10.08657 -9.52040 -8.85780 -4.92924 1.03295 1.37817 1.44922 1.61907 1.79234 1.93088 2.13511 2.30692 2.82890 3.21443 3.41665 3.47355 3.54600 3.62187 3.65030 3.80244 3.80981 3.92098 3.95695 4.18970 4.27691 4.31213 4.33318 4.40028 4.47127 4.48594 4.49814 4.54860 4.58247 4.61035 4.63907 4.68424 4.72777 4.74060 4.79460 4.82762 4.85843 4.86716 4.96846 5.02528 5.07215 5.13362 5.16533 5.24315 5.26936 5.31869 5.39024 5.42086 5.55239 6.02889 6.25423 6.26798 6.31822 6.48435 6.52098 7.10234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.114 4.114 3 C -0.089 4.089 4 C -0.161 4.161 5 C 0.101 3.899 6 C 0.509 3.491 7 O -0.561 6.561 8 N -0.699 5.699 9 C 0.121 3.879 10 H 0.094 0.906 11 C -0.140 4.140 12 C -0.108 4.108 13 H 0.090 0.910 14 C 0.069 3.931 15 O -0.419 6.419 16 C 0.026 3.974 17 C -0.120 4.120 18 N -0.408 5.408 19 C 0.017 3.983 20 C -0.226 4.226 21 C -0.208 4.208 22 C -0.017 4.017 23 C -0.039 4.039 24 O -0.545 6.545 25 Si 0.781 3.219 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.168 0.832 36 H 0.416 0.584 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.158 0.842 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.118 0.882 50 H 0.391 0.609 51 H -0.286 1.286 52 H -0.284 1.284 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 1.528 5.970 7.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.151 4.151 3 C -0.108 4.108 4 C -0.219 4.219 5 C -0.005 4.005 6 C 0.294 3.706 7 O -0.438 6.438 8 N -0.351 5.351 9 C 0.016 3.984 10 H 0.112 0.888 11 C -0.179 4.179 12 C -0.127 4.127 13 H 0.108 0.892 14 C -0.007 4.007 15 O -0.339 6.339 16 C -0.070 4.070 17 C -0.158 4.158 18 N -0.083 5.083 19 C -0.114 4.114 20 C -0.250 4.250 21 C -0.233 4.233 22 C -0.129 4.129 23 C -0.150 4.150 24 O -0.352 6.352 25 Si 0.685 3.315 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.184 0.816 36 H 0.254 0.746 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.103 0.897 46 H 0.175 0.825 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.135 0.865 50 H 0.241 0.759 51 H -0.213 1.213 52 H -0.211 1.211 Dipole moment (debyes) X Y Z Total from point charges -4.517 1.103 5.280 7.036 hybrid contribution 0.301 -0.419 0.740 0.902 sum -4.216 0.683 6.020 7.382 Atomic orbital electron populations 1.21936 0.94641 1.02304 1.02971 1.21499 0.96778 0.94783 1.02085 1.21545 0.97003 0.97553 0.94747 1.22193 0.95060 1.01481 1.03123 1.22100 1.02054 0.88785 0.87520 1.20859 0.80668 0.88576 0.80500 1.90782 1.33661 1.76978 1.42424 1.45784 1.48015 1.07463 1.33881 1.22443 0.99055 0.78422 0.98490 0.88813 1.23547 0.99329 0.96356 0.98674 1.22318 0.97145 0.95902 0.97320 0.89156 1.22634 0.95936 0.87306 0.94814 1.87863 1.47034 1.44022 1.54940 1.22876 0.87016 0.97704 0.99434 1.23294 1.02358 0.94731 0.95462 1.43504 1.05490 1.40689 1.18662 1.21870 0.84786 1.04474 1.00243 1.21014 0.98708 1.06726 0.98561 1.20772 0.92557 1.07871 1.02134 1.20854 0.95476 1.04458 0.92078 1.24808 0.85250 0.92639 1.12283 1.86296 1.66885 1.19136 1.62920 0.93025 0.76344 0.87640 0.74486 0.91058 0.91837 0.92909 0.93437 0.90847 0.86929 0.93459 0.90872 0.92141 0.81559 0.74581 0.92403 0.88421 0.91907 0.92229 0.93141 0.93244 0.89284 0.87043 0.89738 0.82488 0.84518 0.84381 0.86499 0.75912 1.21288 1.21093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.69 9.55 71.98 0.69 1.38 16 2 C -0.11 0.30 5.34 30.60 0.16 0.47 16 3 C -0.09 0.35 2.18 -10.79 -0.02 0.33 16 4 C -0.16 0.15 7.53 71.98 0.54 0.70 16 5 C 0.10 -0.15 2.23 44.25 0.10 -0.05 16 6 C 0.51 0.56 5.98 87.66 0.52 1.09 16 7 O -0.56 -5.73 14.69 -3.05 -0.04 -5.77 16 8 N -0.70 3.52 5.27 -440.04 -2.32 1.20 16 9 C 0.12 -0.37 4.25 45.52 0.19 -0.17 16 10 H 0.09 0.23 7.45 -2.38 -0.02 0.21 16 11 C -0.14 0.37 7.45 31.18 0.23 0.61 16 12 C -0.11 0.36 4.01 -10.21 -0.04 0.32 16 13 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 14 C 0.07 -0.21 5.78 71.98 0.42 0.21 16 15 O -0.42 -1.16 10.70 -148.98 -1.59 -2.76 16 16 C 0.03 -0.06 11.01 113.37 1.25 1.19 16 17 C -0.12 0.89 7.39 31.12 0.23 1.12 16 18 N -0.41 -1.43 1.88 -491.50 -0.93 -2.35 16 19 C 0.02 0.12 7.11 83.22 0.59 0.71 16 20 C -0.23 -1.84 10.86 22.14 0.24 -1.60 16 21 C -0.21 -1.37 9.43 22.14 0.21 -1.16 16 22 C -0.02 -0.06 6.05 41.08 0.25 0.19 16 23 C -0.04 0.03 2.55 71.24 0.18 0.21 16 24 O -0.55 1.87 8.86 -148.98 -1.32 0.55 16 25 Si 0.78 -0.54 31.32 68.60 2.15 1.60 16 26 H 0.07 -0.51 8.14 -2.38 -0.02 -0.53 16 27 H 0.06 -0.19 5.07 -2.39 -0.01 -0.20 16 28 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.05 0.10 7.55 -2.39 -0.02 0.08 16 30 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 31 H 0.11 -1.00 7.54 -2.39 -0.02 -1.01 16 32 H 0.05 0.07 6.71 -2.39 -0.02 0.06 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.06 0.14 5.62 -2.39 -0.01 0.13 16 35 H 0.17 -0.65 3.48 -2.39 -0.01 -0.66 16 36 H 0.42 -4.63 8.18 -92.70 -0.76 -5.39 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.10 -0.48 7.90 -2.39 -0.02 -0.50 16 39 H 0.06 -0.35 7.85 -2.39 -0.02 -0.37 16 40 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.11 -1.29 8.07 -2.38 -0.02 -1.31 16 45 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 46 H 0.16 1.12 6.13 -2.91 -0.02 1.10 16 47 H 0.14 0.88 8.06 -2.91 -0.02 0.85 16 48 H 0.14 0.73 6.69 -2.91 -0.02 0.71 16 49 H 0.12 -0.08 7.79 -2.39 -0.02 -0.10 16 50 H 0.39 -2.95 8.70 -74.05 -0.64 -3.59 16 51 H -0.29 -1.40 6.78 99.48 0.67 -0.73 16 52 H -0.28 -1.24 7.11 99.48 0.71 -0.53 16 Total: 0.00 -17.39 397.64 1.21 -16.18 By element: Atomic # 1 Polarization: -13.70 SS G_CDS: -0.47 Total: -14.17 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.74 Total: 5.52 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -3.25 Total: -1.15 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -2.96 Total: -7.98 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.15 Total: 1.60 kcal Total: -17.39 1.21 -16.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_12360566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.993 kcal (2) G-P(sol) polarization free energy of solvation -17.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds