Wall clock time and date at job start Sat Mar 6 2021 20:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00046 * 2 1 4 4 C 1.52999 * 109.46857 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.85255 * 314.66262 * 4 3 2 6 6 C 1.53782 * 113.61767 * 85.86706 * 4 3 2 7 7 C 1.53957 * 87.02417 * 139.94811 * 6 4 3 8 8 H 1.09000 * 113.61221 * 89.19546 * 7 6 4 9 9 N 1.46493 * 113.66685 * 220.06709 * 7 6 4 10 10 C 1.34780 * 119.99870 * 252.55842 * 9 7 6 11 11 O 1.21281 * 120.00215 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99996 * 180.02562 * 10 9 7 13 13 C 1.50692 * 109.47288 * 185.82490 * 12 10 9 14 14 C 1.39316 * 120.06188 * 80.04051 * 13 12 10 15 15 C 1.48396 * 120.12121 * 0.02562 * 14 13 12 16 16 C 1.39333 * 120.12149 * 236.22815 * 15 14 13 17 17 C 1.38019 * 119.87576 * 179.71986 * 16 15 14 18 18 C 1.38317 * 120.12089 * 0.57823 * 17 16 15 19 19 C 1.50704 * 119.87932 * 179.69892 * 18 17 16 20 20 O 1.42895 * 109.47210 * 244.97360 * 19 18 17 21 21 Si 1.86297 * 109.46889 * 4.97616 * 19 18 17 22 22 C 1.38320 * 120.24541 * 359.67122 * 18 17 16 23 23 C 1.38022 * 120.12114 * 0.05059 * 22 18 17 24 24 C 1.39359 * 119.75997 * 179.75221 * 14 13 12 25 25 C 1.37996 * 119.87554 * 0.56451 * 24 14 13 26 26 C 1.38342 * 120.12354 * 359.69036 * 25 24 14 27 27 C 1.38038 * 120.06090 * 260.31827 * 13 12 10 28 28 C 1.53787 * 87.11032 * 334.63789 * 7 6 4 29 29 H 1.09004 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47110 * 299.99934 * 1 2 3 31 31 H 1.08999 * 109.47293 * 59.99819 * 1 2 3 32 32 H 1.09000 * 109.47510 * 299.99948 * 3 2 1 33 33 H 1.09001 * 109.47470 * 60.00232 * 3 2 1 34 34 H 1.09001 * 113.60934 * 254.53070 * 6 4 3 35 35 H 1.09001 * 113.61389 * 25.42898 * 6 4 3 36 36 H 0.97002 * 120.00162 * 72.56113 * 9 7 6 37 37 H 1.09007 * 109.47065 * 305.82997 * 12 10 9 38 38 H 1.09002 * 109.47331 * 65.82064 * 12 10 9 39 39 H 1.07998 * 120.06061 * 359.97424 * 16 15 14 40 40 H 1.07999 * 119.93862 * 180.27452 * 17 16 15 41 41 H 1.09001 * 109.46830 * 124.97479 * 19 18 17 42 42 H 0.96699 * 114.00028 * 60.00285 * 20 19 18 43 43 H 1.48504 * 110.00023 * 179.97438 * 21 19 18 44 44 H 1.48499 * 110.00057 * 301.31661 * 21 19 18 45 45 H 1.08001 * 119.94016 * 180.02562 * 22 18 17 46 46 H 1.08002 * 120.06150 * 179.97438 * 23 22 18 47 47 H 1.08003 * 120.06539 * 180.27615 * 24 14 13 48 48 H 1.08006 * 119.93888 * 179.70113 * 25 24 14 49 49 H 1.07997 * 119.88215 * 180.02562 * 26 25 24 50 50 H 1.07992 * 119.94173 * 359.97438 * 27 13 12 51 51 H 1.08999 * 113.61184 * 270.81386 * 28 7 6 52 52 H 1.08996 * 113.61299 * 139.90913 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 1 3.9019 0.4471 0.7135 6 6 4.1410 1.0349 -1.4063 7 6 5.2653 1.9749 -0.9345 8 1 6.1063 1.4543 -0.4766 9 7 5.6817 2.9481 -1.9472 10 6 6.8693 2.8075 -2.5688 11 8 7.5930 1.8750 -2.2901 12 6 7.2980 3.8089 -3.6102 13 6 8.5838 3.3507 -4.2485 14 6 8.5600 2.3781 -5.2458 15 6 7.2690 1.7911 -5.6828 16 6 7.0756 0.4121 -5.6331 17 6 5.8708 -0.1280 -6.0353 18 6 4.8608 0.6959 -6.4983 19 6 3.5500 0.0997 -6.9425 20 8 3.3741 0.3253 -8.3425 21 14 3.5548 -1.7324 -6.6045 22 6 5.0493 2.0650 -6.5546 23 6 6.2480 2.6164 -6.1496 24 6 9.7523 1.9627 -5.8355 25 6 10.9505 2.5077 -5.4211 26 6 10.9689 3.4693 -4.4267 27 6 9.7879 3.8896 -3.8423 28 6 4.2607 2.5380 0.0847 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 4.4810 0.0236 -1.6297 35 1 3.5207 1.4582 -2.1963 36 1 5.1028 3.6937 -2.1704 37 1 6.5238 3.8941 -4.3728 38 1 7.4520 4.7797 -3.1390 39 1 7.8654 -0.2325 -5.2766 40 1 5.7182 -1.1963 -5.9930 41 1 2.7332 0.5683 -6.3935 42 1 4.0663 -0.0647 -8.8938 43 1 2.2672 -2.3322 -7.0375 44 1 4.6832 -2.3782 -7.3220 45 1 4.2572 2.7037 -6.9166 46 1 6.3943 3.6855 -6.1943 47 1 9.7392 1.2123 -6.6121 48 1 11.8757 2.1829 -5.8740 49 1 11.9088 3.8934 -4.1056 50 1 9.8080 4.6406 -3.0665 51 1 3.6731 3.3730 -0.2970 52 1 4.6973 2.7385 1.0630 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_13158394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:07 Heat of formation + Delta-G solvation = -31.563630 kcal Electronic energy + Delta-G solvation = -33711.545741 eV Core-core repulsion = 29415.322617 eV Total energy + Delta-G solvation = -4296.223124 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.56085 -40.81435 -39.91773 -39.27670 -38.09408 -37.68846 -34.58772 -34.20061 -33.37821 -31.98161 -30.74441 -29.83938 -28.54391 -26.86426 -26.61485 -26.45546 -24.13531 -23.77018 -23.30707 -22.43570 -21.70742 -21.33990 -20.46864 -18.64116 -18.06202 -17.92789 -17.59251 -17.14106 -17.02683 -16.80158 -16.61682 -16.33939 -16.24792 -15.92723 -15.83125 -15.65514 -15.44182 -15.34245 -14.87447 -14.72928 -14.46401 -14.10436 -14.03666 -13.95460 -13.66405 -13.38641 -13.36742 -13.20676 -13.12073 -13.02861 -12.80537 -12.40202 -12.34351 -12.31506 -12.07621 -11.95390 -11.75891 -11.65392 -11.57916 -11.31839 -10.86545 -10.63602 -10.52658 -10.17456 -9.94028 -9.92960 -9.73195 -9.22109 -4.96920 -0.09335 0.38673 0.41427 0.61360 1.26475 1.52796 1.70745 1.87882 2.25804 2.62052 2.85056 2.92843 3.39310 3.53055 3.54549 3.68443 3.68858 3.75479 3.88078 3.91362 3.95321 3.98530 3.99331 4.07872 4.18049 4.32274 4.37608 4.39386 4.44972 4.51462 4.54126 4.54284 4.56968 4.61352 4.62499 4.65315 4.70291 4.79094 4.86142 4.87490 4.88239 4.90995 4.98702 5.02586 5.10598 5.11728 5.14417 5.34548 5.36811 5.41623 5.47472 5.53663 5.58414 5.66188 5.67317 5.93634 6.05805 6.30387 6.44403 6.63796 7.35366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.071 3.929 4 C -0.107 4.107 5 H 0.089 0.911 6 C -0.138 4.138 7 C 0.120 3.880 8 H 0.089 0.911 9 N -0.708 5.708 10 C 0.517 3.483 11 O -0.575 6.575 12 C -0.110 4.110 13 C -0.063 4.063 14 C -0.051 4.051 15 C -0.040 4.040 16 C -0.109 4.109 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.070 4.070 20 O -0.545 6.545 21 Si 0.742 3.258 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.118 4.118 28 C -0.121 4.121 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.416 0.584 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.385 0.615 43 H -0.298 1.298 44 H -0.287 1.287 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.126 0.874 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.139 0.861 51 H 0.110 0.890 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 5.889 2.054 6.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.006 4.006 4 C -0.126 4.126 5 H 0.107 0.893 6 C -0.177 4.177 7 C 0.014 3.986 8 H 0.107 0.893 9 N -0.360 5.360 10 C 0.305 3.695 11 O -0.453 6.453 12 C -0.149 4.149 13 C -0.063 4.063 14 C -0.051 4.051 15 C -0.040 4.040 16 C -0.127 4.127 17 C -0.136 4.136 18 C -0.117 4.117 19 C -0.180 4.180 20 O -0.352 6.352 21 Si 0.649 3.351 22 C -0.107 4.107 23 C -0.131 4.131 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.136 4.136 28 C -0.159 4.159 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.253 0.747 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.234 0.766 43 H -0.226 1.226 44 H -0.214 1.214 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.144 0.856 48 H 0.156 0.844 49 H 0.158 0.842 50 H 0.157 0.843 51 H 0.128 0.872 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.974 4.582 2.134 5.864 hybrid contribution 0.263 0.240 -1.175 1.228 sum -2.711 4.822 0.959 5.614 Atomic orbital electron populations 1.22873 0.79916 1.03488 1.00742 1.87864 1.20986 1.29193 1.95579 1.22612 0.92580 0.84315 1.01063 1.22291 0.93291 0.98817 0.98236 0.89256 1.23510 0.97152 0.99955 0.97106 1.22403 0.95657 0.90968 0.89546 0.89284 1.45849 1.19666 1.29962 1.40483 1.20841 0.81017 0.85870 0.81820 1.90721 1.54487 1.34578 1.65548 1.20939 0.96553 0.99434 0.97977 1.19477 0.94921 0.96251 0.95669 1.18743 0.92525 0.96725 0.97081 1.18856 0.93219 0.93188 0.98720 1.21199 0.97576 0.94494 0.99460 1.21070 0.93246 0.99799 0.99508 1.20309 0.95913 0.94679 1.00824 1.25011 0.97405 1.11762 0.83809 1.86568 1.53451 1.78813 1.16417 0.94148 0.76255 0.73268 0.91443 1.21081 0.97456 0.94241 0.97934 1.21395 0.92466 1.00331 0.98903 1.21349 0.92003 1.00280 1.00312 1.21356 0.98257 0.97161 0.97751 1.21482 0.98976 0.97379 0.96485 1.21247 0.91804 1.00633 0.99878 1.23293 0.96136 0.96847 0.99639 0.89253 0.93419 0.93101 0.91912 0.92426 0.92370 0.88567 0.74689 0.85843 0.85194 0.86425 0.84990 0.85201 0.76554 1.22604 1.21402 0.84211 0.83832 0.85623 0.84410 0.84207 0.84271 0.87199 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 11.01 113.37 1.25 1.19 16 2 O -0.42 -1.20 10.70 -148.98 -1.59 -2.79 16 3 C 0.07 -0.17 5.76 71.98 0.41 0.24 16 4 C -0.11 0.26 4.00 -10.26 -0.04 0.21 16 5 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 6 C -0.14 0.17 7.45 31.18 0.23 0.40 16 7 C 0.12 -0.14 4.24 45.58 0.19 0.06 16 8 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 9 N -0.71 2.25 5.36 -439.75 -2.36 -0.11 16 10 C 0.52 1.45 7.60 87.66 0.67 2.11 16 11 O -0.57 -7.34 15.64 -3.03 -0.05 -7.39 16 12 C -0.11 0.26 5.30 29.10 0.15 0.41 16 13 C -0.06 -0.20 4.39 -19.65 -0.09 -0.29 16 14 C -0.05 -0.26 5.38 -20.04 -0.11 -0.37 16 15 C -0.04 -0.15 4.73 -20.04 -0.09 -0.24 16 16 C -0.11 -0.54 9.62 22.48 0.22 -0.32 16 17 C -0.12 -0.28 8.65 22.24 0.19 -0.09 16 18 C -0.12 -0.06 5.36 -19.82 -0.11 -0.17 16 19 C -0.07 0.03 2.80 71.24 0.20 0.23 16 20 O -0.54 -1.26 12.83 -148.98 -1.91 -3.17 16 21 Si 0.74 0.31 29.87 68.60 2.05 2.36 16 22 C -0.09 0.05 9.67 22.24 0.21 0.27 16 23 C -0.11 0.02 7.84 22.48 0.18 0.19 16 24 C -0.12 -0.62 9.62 22.48 0.22 -0.40 16 25 C -0.13 -0.44 10.03 22.24 0.22 -0.22 16 26 C -0.13 -0.33 10.04 22.31 0.22 -0.11 16 27 C -0.12 -0.31 9.66 22.24 0.21 -0.09 16 28 C -0.12 0.72 7.40 31.13 0.23 0.95 16 29 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.06 -0.32 7.87 -2.39 -0.02 -0.34 16 33 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.06 0.15 8.14 -2.39 -0.02 0.14 16 35 H 0.10 -0.33 7.92 -2.39 -0.02 -0.35 16 36 H 0.42 -4.11 8.73 -92.71 -0.81 -4.92 16 37 H 0.12 -0.73 4.85 -2.38 -0.01 -0.74 16 38 H 0.13 -1.02 8.01 -2.39 -0.02 -1.04 16 39 H 0.12 0.69 8.06 -2.91 -0.02 0.66 16 40 H 0.13 0.04 4.82 -2.91 -0.01 0.02 16 41 H 0.13 -0.38 7.96 -2.39 -0.02 -0.39 16 42 H 0.39 -0.96 8.70 -74.06 -0.64 -1.60 16 43 H -0.30 -2.22 7.11 99.48 0.71 -1.51 16 44 H -0.29 -1.38 7.00 99.48 0.70 -0.68 16 45 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 46 H 0.14 -0.59 7.07 -2.91 -0.02 -0.61 16 47 H 0.13 0.41 8.06 -2.91 -0.02 0.38 16 48 H 0.14 -0.06 8.06 -2.91 -0.02 -0.09 16 49 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 50 H 0.14 -0.23 8.04 -2.91 -0.02 -0.26 16 51 H 0.11 -1.11 8.08 -2.39 -0.02 -1.13 16 52 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: 0.00 -21.62 425.87 0.23 -21.38 By element: Atomic # 1 Polarization: -13.77 SS G_CDS: -0.49 Total: -14.25 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.58 Total: 3.97 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -2.36 Total: -0.11 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -3.55 Total: -13.35 kcal Atomic # 14 Polarization: 0.31 SS G_CDS: 2.05 Total: 2.36 kcal Total: -21.62 0.23 -21.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13158394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.182 kcal (2) G-P(sol) polarization free energy of solvation -21.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds