Wall clock time and date at job start Sat Mar 6 2021 20:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00372 * 2 1 4 4 C 1.52997 * 109.47783 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.84468 * 316.19798 * 4 3 2 6 6 C 1.53947 * 113.74535 * 87.40022 * 4 3 2 7 7 C 1.53779 * 87.02079 * 139.94797 * 6 4 3 8 8 H 1.09000 * 113.61622 * 89.23161 * 7 6 4 9 9 N 1.46502 * 113.61721 * 220.04737 * 7 6 4 10 10 C 1.34771 * 120.00234 * 254.14095 * 9 7 6 11 11 O 1.21587 * 120.00217 * 359.97438 * 10 9 7 12 12 C 1.47569 * 120.00071 * 179.97438 * 10 9 7 13 13 C 1.40206 * 120.12497 * 179.97438 * 12 10 9 14 14 O 1.35650 * 119.99935 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99983 * 180.02562 * 13 12 10 16 16 C 1.37774 * 120.24223 * 0.02562 * 15 13 12 17 17 C 1.39850 * 120.24324 * 359.97438 * 16 15 13 18 18 C 1.47815 * 119.99792 * 179.97438 * 17 16 15 19 19 C 1.35942 * 125.93116 * 0.02562 * 18 17 16 20 20 C 1.40965 * 106.74146 * 179.76587 * 19 18 17 21 21 C 1.34700 * 107.02909 * 0.40719 * 20 19 18 22 22 C 1.50706 * 125.66688 * 179.85182 * 21 20 19 23 23 O 1.42895 * 109.46849 * 64.71370 * 22 21 20 24 24 Si 1.86294 * 109.47281 * 184.71851 * 22 21 20 25 25 O 1.34341 * 108.67218 * 359.58844 * 21 20 19 26 26 C 1.39173 * 120.00189 * 0.25267 * 17 16 15 27 27 C 1.53779 * 87.17361 * 334.63933 * 7 6 4 28 28 H 1.08997 * 109.46956 * 59.99928 * 1 2 3 29 29 H 1.08996 * 109.46869 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46805 * 299.99773 * 1 2 3 31 31 H 1.09009 * 109.47153 * 60.00149 * 3 2 1 32 32 H 1.08999 * 109.47420 * 300.00340 * 3 2 1 33 33 H 1.09003 * 113.61373 * 25.43041 * 6 4 3 34 34 H 1.09002 * 113.67086 * 254.47923 * 6 4 3 35 35 H 0.97003 * 119.99942 * 74.13407 * 9 7 6 36 36 H 0.96703 * 114.00107 * 270.02050 * 14 13 12 37 37 H 1.07997 * 119.87955 * 180.02562 * 15 13 12 38 38 H 1.08003 * 119.87451 * 179.97438 * 16 15 13 39 39 H 1.08002 * 126.62619 * 359.97438 * 19 18 17 40 40 H 1.07999 * 126.48668 * 180.25770 * 20 19 18 41 41 H 1.09001 * 109.46694 * 304.71836 * 22 21 20 42 42 H 0.96705 * 113.99673 * 180.02562 * 23 22 21 43 43 H 1.48501 * 109.99823 * 299.99844 * 24 22 21 44 44 H 1.48494 * 110.00523 * 61.31722 * 24 22 21 45 45 H 1.07993 * 120.12366 * 179.72189 * 26 17 16 46 46 H 1.09001 * 113.61200 * 139.93614 * 27 7 6 47 47 H 1.08998 * 113.61574 * 270.84189 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9004 0.4283 0.6944 6 6 4.1478 1.0722 -1.4086 7 6 5.2685 1.9986 -0.9078 8 1 6.1080 1.4662 -0.4607 9 7 5.6885 2.9977 -1.8935 10 6 6.8642 2.8567 -2.5370 11 8 7.5766 1.9005 -2.2992 12 6 7.2870 3.8628 -3.5303 13 6 8.5099 3.7189 -4.2010 14 8 9.3065 2.6530 -3.9376 15 6 8.9053 4.6671 -5.1345 16 6 8.1003 5.7519 -5.4054 17 6 6.8785 5.9054 -4.7425 18 6 6.0193 7.0716 -5.0370 19 6 6.2964 8.0625 -5.9254 20 6 5.2082 8.9578 -5.8876 21 6 4.3347 8.4788 -4.9810 22 6 3.0209 9.1147 -4.6054 23 8 2.1465 9.1044 -5.7355 24 14 2.2437 8.1561 -3.2098 25 8 4.8262 7.3371 -4.4715 26 6 6.4743 4.9633 -3.8012 27 6 4.2605 2.5352 0.1222 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8463 0.8901 32 1 1.6887 1.8463 -0.8899 33 1 3.5308 1.5163 -2.1898 34 1 4.4903 0.0679 -1.6580 35 1 5.1204 3.7607 -2.0831 36 1 9.9410 2.8032 -3.2234 37 1 9.8474 4.5542 -5.6502 38 1 8.4139 6.4863 -6.1326 39 1 7.1782 8.1457 -6.5435 40 1 5.0972 9.8587 -6.4728 41 1 3.1927 10.1433 -4.2882 42 1 1.2802 9.4995 -5.5660 43 1 2.0044 6.7519 -3.6296 44 1 3.1290 8.1860 -2.0180 45 1 5.5333 5.0823 -3.2848 46 1 4.6938 2.7103 1.1069 47 1 3.6743 3.3799 -0.2397 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_13259648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:11 Heat of formation + Delta-G solvation = -77.446193 kcal Electronic energy + Delta-G solvation = -31651.434171 eV Core-core repulsion = 27155.158423 eV Total energy + Delta-G solvation = -4496.275747 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.150 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.83255 -41.80604 -40.65837 -39.38447 -38.26531 -38.05603 -37.77738 -34.94556 -34.29821 -32.91200 -32.43604 -30.20366 -29.65251 -27.07628 -26.75266 -26.40115 -25.58289 -23.92859 -23.36849 -22.70035 -21.73518 -21.41344 -20.78686 -19.65539 -19.05240 -18.66495 -18.01294 -17.73108 -17.32337 -17.16258 -16.92267 -16.81756 -16.62743 -16.34531 -16.10029 -15.87414 -15.78821 -15.66075 -15.38744 -14.68894 -14.56798 -14.41387 -14.19486 -14.09144 -13.97015 -13.63534 -13.58174 -13.34094 -13.22298 -13.21153 -13.02974 -12.69439 -12.48779 -12.19986 -12.14425 -11.96844 -11.75205 -11.49914 -11.18113 -10.98794 -10.66671 -10.65095 -10.43588 -10.38244 -10.14400 -9.01450 -5.08853 -0.66967 -0.33812 0.64503 1.15455 1.34494 1.50810 1.63320 1.74999 1.92009 1.97795 2.50990 2.74884 3.00641 3.12962 3.30160 3.38949 3.50769 3.52073 3.70697 3.71680 3.74048 3.80202 3.91316 3.95629 4.08300 4.22737 4.26241 4.30730 4.37504 4.42271 4.47454 4.52976 4.53500 4.55278 4.58345 4.67580 4.70577 4.71179 4.79056 4.81023 4.89457 4.92185 4.95142 5.03506 5.09913 5.14679 5.35391 5.40859 5.43224 5.87452 6.18101 6.28666 6.65210 6.82523 6.99022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.070 3.930 4 C -0.102 4.102 5 H 0.099 0.901 6 C -0.146 4.146 7 C 0.118 3.882 8 H 0.103 0.897 9 N -0.709 5.709 10 C 0.557 3.443 11 O -0.556 6.556 12 C -0.180 4.180 13 C 0.166 3.834 14 O -0.493 6.493 15 C -0.142 4.142 16 C -0.042 4.042 17 C -0.044 4.044 18 C 0.014 3.986 19 C -0.185 4.185 20 C -0.175 4.175 21 C -0.033 4.033 22 C -0.041 4.041 23 O -0.561 6.561 24 Si 0.799 3.201 25 O -0.193 6.193 26 C -0.057 4.057 27 C -0.121 4.121 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.408 0.592 36 H 0.412 0.588 37 H 0.170 0.830 38 H 0.170 0.830 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.124 0.876 42 H 0.413 0.587 43 H -0.302 1.302 44 H -0.288 1.288 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 9.629 1.095 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.007 4.007 4 C -0.121 4.121 5 H 0.117 0.883 6 C -0.185 4.185 7 C 0.013 3.987 8 H 0.121 0.879 9 N -0.360 5.360 10 C 0.345 3.655 11 O -0.435 6.435 12 C -0.184 4.184 13 C 0.120 3.880 14 O -0.306 6.306 15 C -0.160 4.160 16 C -0.060 4.060 17 C -0.045 4.045 18 C -0.035 4.035 19 C -0.203 4.203 20 C -0.194 4.194 21 C -0.082 4.082 22 C -0.151 4.151 23 O -0.373 6.373 24 Si 0.704 3.296 25 O -0.092 6.092 26 C -0.076 4.076 27 C -0.159 4.159 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.245 0.755 36 H 0.273 0.727 37 H 0.187 0.813 38 H 0.187 0.813 39 H 0.200 0.800 40 H 0.189 0.811 41 H 0.142 0.858 42 H 0.266 0.734 43 H -0.230 1.230 44 H -0.215 1.215 45 H 0.154 0.846 46 H 0.111 0.889 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.765 7.392 1.334 8.402 hybrid contribution 0.308 0.506 -0.168 0.616 sum -3.456 7.899 1.167 8.700 Atomic orbital electron populations 1.22897 0.79706 1.03637 1.00838 1.87859 1.21230 1.29061 1.95591 1.22606 0.92523 0.84427 1.01109 1.22312 0.93373 0.98839 0.97584 0.88266 1.23558 0.97351 1.00055 0.97499 1.22558 0.96153 0.90275 0.89700 0.87903 1.45899 1.20640 1.27806 1.41676 1.18302 0.81484 0.85034 0.80703 1.90800 1.54467 1.32619 1.65595 1.20280 0.98634 0.97523 1.01913 1.18875 0.89417 0.86336 0.93392 1.84707 1.51847 1.35159 1.58935 1.21621 1.02511 0.92716 0.99186 1.21447 0.90303 0.97372 0.96899 1.17756 0.94651 0.92347 0.99698 1.20582 0.86115 0.98044 0.98755 1.22234 1.02057 0.94445 1.01606 1.21865 0.93944 1.03153 1.00457 1.22103 0.98438 0.87216 1.00403 1.24006 0.87408 1.05524 0.98115 1.86419 1.30078 1.85511 1.35308 0.94346 0.84739 0.77351 0.73197 1.83921 1.31333 1.37562 1.56369 1.21305 0.98672 0.91688 0.95926 1.23297 0.95906 0.96902 0.99830 0.93393 0.89067 0.92924 0.91663 0.92593 0.89520 0.92177 0.75480 0.72740 0.81271 0.81286 0.80039 0.81100 0.85847 0.73411 1.23013 1.21530 0.84603 0.88857 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 11.01 113.37 1.25 1.25 16 2 O -0.42 -2.29 10.70 -148.98 -1.59 -3.89 16 3 C 0.07 0.04 5.78 71.98 0.42 0.45 16 4 C -0.10 -0.06 4.00 -10.21 -0.04 -0.10 16 5 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 6 C -0.15 -0.51 7.45 31.18 0.23 -0.28 16 7 C 0.12 0.36 4.21 45.52 0.19 0.55 16 8 H 0.10 0.68 7.50 -2.39 -0.02 0.67 16 9 N -0.71 -2.67 5.31 -443.18 -2.35 -5.03 16 10 C 0.56 5.30 7.76 86.71 0.67 5.97 16 11 O -0.56 -9.13 14.76 17.00 0.25 -8.88 16 12 C -0.18 -1.16 5.88 -20.04 -0.12 -1.27 16 13 C 0.17 0.87 6.72 22.89 0.15 1.02 16 14 O -0.49 -3.42 11.55 -68.66 -0.79 -4.21 16 15 C -0.14 0.07 9.96 22.30 0.22 0.29 16 16 C -0.04 0.06 9.54 22.55 0.22 0.28 16 17 C -0.04 -0.13 5.87 -20.13 -0.12 -0.25 16 18 C 0.01 0.07 7.03 24.27 0.17 0.24 16 19 C -0.18 -0.31 10.26 22.40 0.23 -0.08 16 20 C -0.18 -0.47 10.78 22.13 0.24 -0.23 16 21 C -0.03 -0.14 6.24 24.88 0.16 0.01 16 22 C -0.04 0.12 2.97 71.24 0.21 0.33 16 23 O -0.56 1.62 12.86 -148.98 -1.92 -0.30 16 24 Si 0.80 -2.88 32.11 68.60 2.20 -0.68 16 25 O -0.19 -1.40 8.80 -6.50 -0.06 -1.46 16 26 C -0.06 -0.22 9.20 22.79 0.21 -0.01 16 27 C -0.12 0.31 7.39 31.12 0.23 0.54 16 28 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 32 H 0.06 -0.05 7.86 -2.39 -0.02 -0.07 16 33 H 0.09 0.25 7.91 -2.39 -0.02 0.23 16 34 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.41 -0.25 6.74 -92.71 -0.62 -0.87 16 36 H 0.41 -0.24 9.06 -74.06 -0.67 -0.91 16 37 H 0.17 -0.91 8.06 -2.91 -0.02 -0.93 16 38 H 0.17 -1.30 6.96 -2.91 -0.02 -1.32 16 39 H 0.18 -0.85 7.25 -2.91 -0.02 -0.88 16 40 H 0.17 -0.22 8.06 -2.91 -0.02 -0.25 16 41 H 0.12 -1.08 7.96 -2.39 -0.02 -1.10 16 42 H 0.41 -5.93 8.74 -74.05 -0.65 -6.57 16 43 H -0.30 -1.56 7.11 99.48 0.71 -0.85 16 44 H -0.29 -0.63 7.11 99.48 0.71 0.08 16 45 H 0.14 0.22 6.24 -2.91 -0.02 0.20 16 46 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 47 H 0.10 -0.56 8.07 -2.39 -0.02 -0.58 16 Total: 0.00 -28.68 399.74 -0.60 -29.28 By element: Atomic # 1 Polarization: -12.68 SS G_CDS: -0.87 Total: -13.54 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 4.52 Total: 8.70 kcal Atomic # 7 Polarization: -2.67 SS G_CDS: -2.35 Total: -5.03 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -4.11 Total: -18.73 kcal Atomic # 14 Polarization: -2.88 SS G_CDS: 2.20 Total: -0.68 kcal Total: -28.68 -0.60 -29.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13259648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.167 kcal (2) G-P(sol) polarization free energy of solvation -28.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds