Wall clock time and date at job start Sat Mar 6 2021 20:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99805 * 2 1 4 4 C 1.52999 * 109.47348 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.85077 * 316.19622 * 4 3 2 6 6 C 1.53779 * 113.61678 * 87.49636 * 4 3 2 7 7 C 1.53782 * 87.08143 * 139.98458 * 6 4 3 8 8 H 1.09001 * 113.68887 * 89.13016 * 7 6 4 9 9 N 1.46497 * 113.61831 * 220.02233 * 7 6 4 10 10 C 1.34780 * 120.00098 * 252.49962 * 9 7 6 11 11 O 1.21510 * 120.00000 * 0.02562 * 10 9 7 12 12 C 1.48164 * 119.99746 * 179.97438 * 10 9 7 13 13 N 1.32718 * 119.72963 * 0.02562 * 12 10 9 14 14 C 1.31521 * 121.64463 * 179.74546 * 13 12 10 15 15 C 1.38553 * 120.90337 * 0.49760 * 14 13 12 16 16 C 1.50699 * 120.32283 * 179.76611 * 15 14 13 17 17 O 1.42903 * 109.47152 * 119.72486 * 16 15 14 18 18 Si 1.86293 * 109.47431 * 359.72377 * 16 15 14 19 19 C 1.38627 * 119.35252 * 359.49344 * 15 14 13 20 20 C 1.38587 * 118.48993 * 0.24979 * 19 15 14 21 21 C 1.53781 * 113.62061 * 185.00189 * 4 3 2 22 22 H 1.09002 * 109.47098 * 59.99876 * 1 2 3 23 23 H 1.08995 * 109.46960 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46762 * 299.99903 * 1 2 3 25 25 H 1.09005 * 109.47450 * 60.00052 * 3 2 1 26 26 H 1.09000 * 109.47593 * 299.99702 * 3 2 1 27 27 H 1.09006 * 113.60950 * 25.43891 * 6 4 3 28 28 H 1.08998 * 113.61888 * 254.53277 * 6 4 3 29 29 H 0.97003 * 119.99996 * 72.49362 * 9 7 6 30 30 H 1.08001 * 119.54577 * 180.23622 * 14 13 12 31 31 H 1.09008 * 109.47393 * 239.71881 * 16 15 14 32 32 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 33 33 H 1.48506 * 109.99973 * 59.99460 * 18 16 15 34 34 H 1.48493 * 110.00375 * 181.31561 * 18 16 15 35 35 H 1.08001 * 120.75673 * 180.23049 * 19 15 14 36 36 H 1.07998 * 120.47289 * 180.02562 * 20 19 15 37 37 H 1.08997 * 113.61970 * 105.46752 * 21 4 3 38 38 H 1.08998 * 113.68657 * 334.57332 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9000 0.4288 0.6962 6 6 4.1453 1.0745 -1.4067 7 6 5.2679 1.9992 -0.9071 8 1 6.1077 1.4668 -0.4606 9 7 5.6873 2.9987 -1.8927 10 6 6.8767 2.8745 -2.5143 11 8 7.6010 1.9332 -2.2576 12 6 7.3005 3.8850 -3.5115 13 7 6.5049 4.9107 -3.7881 14 6 6.8456 5.8319 -4.6628 15 6 8.0522 5.7588 -5.3399 16 6 8.4270 6.8188 -6.3433 17 8 9.6358 7.4595 -5.9304 18 14 7.0613 8.0810 -6.4528 19 6 8.9139 4.7041 -5.0810 20 6 8.5312 3.7509 -4.1506 21 6 4.2604 2.5354 0.1235 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6887 1.8464 -0.8900 27 1 3.5273 1.5199 -2.1864 28 1 4.4862 0.0701 -1.6575 29 1 5.1089 3.7499 -2.0980 30 1 6.1736 6.6543 -4.8591 31 1 8.5754 6.3583 -7.3201 32 1 9.9372 8.1551 -6.5307 33 1 6.8492 8.7162 -5.1273 34 1 7.4046 9.1147 -7.4622 35 1 9.8617 4.6269 -5.5929 36 1 9.1778 2.9162 -3.9240 37 1 4.6941 2.7103 1.1081 38 1 3.6749 3.3810 -0.2373 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_13287726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:18 Heat of formation + Delta-G solvation = -46.231120 kcal Electronic energy + Delta-G solvation = -20960.718057 eV Core-core repulsion = 17577.950410 eV Total energy + Delta-G solvation = -3382.767646 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93400 -40.88524 -39.61736 -38.21174 -37.93737 -34.91055 -33.70733 -33.02888 -29.77009 -27.93152 -26.89133 -26.57788 -25.02882 -24.33368 -22.90037 -21.74708 -20.81335 -19.15021 -18.67054 -18.22834 -17.53267 -17.09865 -16.89791 -16.77366 -16.42041 -16.29893 -15.81780 -15.66775 -15.53205 -15.06352 -14.68049 -14.29009 -14.05735 -13.99334 -13.90128 -13.45704 -13.20154 -12.98408 -12.56294 -12.42122 -12.11998 -12.07218 -11.66550 -11.45513 -11.38487 -11.09498 -10.79993 -10.58860 -10.56649 -10.29978 -10.03738 -4.93223 -0.61058 0.06918 1.23451 1.51390 1.60627 1.94795 1.95647 2.61468 2.80381 2.94281 3.25262 3.45233 3.58948 3.62446 3.68204 3.78440 3.80111 3.89127 3.91445 4.17907 4.32450 4.38089 4.39815 4.49893 4.54053 4.57233 4.60771 4.71253 4.75444 4.81268 4.86728 4.88416 4.97779 5.01086 5.05351 5.22848 5.36416 5.52322 6.24598 6.27484 6.54093 6.60382 7.03017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.070 3.930 4 C -0.104 4.104 5 H 0.096 0.904 6 C -0.141 4.141 7 C 0.112 3.888 8 H 0.101 0.899 9 N -0.688 5.688 10 C 0.569 3.431 11 O -0.568 6.568 12 C 0.061 3.939 13 N -0.457 5.457 14 C 0.100 3.900 15 C -0.104 4.104 16 C -0.083 4.083 17 O -0.557 6.557 18 Si 0.763 3.237 19 C -0.055 4.055 20 C -0.117 4.117 21 C -0.121 4.121 22 H 0.049 0.951 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.420 0.580 30 H 0.186 0.814 31 H 0.110 0.890 32 H 0.400 0.600 33 H -0.292 1.292 34 H -0.282 1.282 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 4.342 -3.827 7.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.007 4.007 4 C -0.123 4.123 5 H 0.114 0.886 6 C -0.180 4.180 7 C 0.008 3.992 8 H 0.119 0.881 9 N -0.338 5.338 10 C 0.355 3.645 11 O -0.447 6.447 12 C -0.076 4.076 13 N -0.169 5.169 14 C -0.059 4.059 15 C -0.106 4.106 16 C -0.192 4.192 17 O -0.368 6.368 18 Si 0.667 3.333 19 C -0.080 4.080 20 C -0.137 4.137 21 C -0.159 4.159 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.259 0.741 30 H 0.202 0.798 31 H 0.127 0.873 32 H 0.252 0.748 33 H -0.220 1.220 34 H -0.208 1.208 35 H 0.179 0.821 36 H 0.167 0.833 37 H 0.106 0.894 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.576 3.944 -2.591 6.574 hybrid contribution 1.681 0.773 -0.619 1.951 sum -2.895 4.717 -3.210 6.398 Atomic orbital electron populations 1.22886 0.79797 1.03549 1.00823 1.87858 1.21138 1.29210 1.95600 1.22621 0.92517 0.84318 1.01204 1.22283 0.93365 0.98815 0.97826 0.88560 1.23513 0.97056 0.99958 0.97440 1.22634 0.96270 0.90428 0.89882 0.88069 1.45789 1.18774 1.28503 1.40715 1.18129 0.81856 0.84036 0.80500 1.90781 1.54845 1.33639 1.65421 1.21098 0.93438 0.94746 0.98308 1.67502 1.33060 1.01498 1.14797 1.22953 0.95050 0.96843 0.91095 1.20809 0.95609 0.96235 0.97973 1.24937 0.95899 0.99995 0.98361 1.86531 1.40108 1.55602 1.54527 0.94203 0.83011 0.78118 0.77977 1.21737 0.99923 0.91436 0.94927 1.22290 0.96036 1.00190 0.95229 1.23304 0.95937 0.97057 0.99613 0.93203 0.89176 0.93168 0.92004 0.92103 0.88858 0.92036 0.74123 0.79762 0.87258 0.74849 1.21971 1.20811 0.82069 0.83257 0.89362 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.87 10.70 -148.98 -1.59 -3.47 16 3 C 0.07 -0.05 5.78 71.98 0.42 0.37 16 4 C -0.10 0.07 4.01 -10.27 -0.04 0.02 16 5 H 0.10 0.11 8.14 -2.38 -0.02 0.09 16 6 C -0.14 -0.19 7.43 31.12 0.23 0.05 16 7 C 0.11 0.20 4.24 45.52 0.19 0.40 16 8 H 0.10 0.58 7.46 -2.39 -0.02 0.56 16 9 N -0.69 -1.96 5.34 -442.60 -2.37 -4.32 16 10 C 0.57 4.87 7.81 86.88 0.68 5.55 16 11 O -0.57 -8.62 15.92 -3.75 -0.06 -8.68 16 12 C 0.06 0.37 6.75 41.91 0.28 0.65 16 13 N -0.46 -1.49 9.54 -184.92 -1.76 -3.26 16 14 C 0.10 -0.03 9.84 84.81 0.83 0.81 16 15 C -0.10 0.07 5.44 -19.70 -0.11 -0.04 16 16 C -0.08 0.41 2.82 71.24 0.20 0.61 16 17 O -0.56 1.09 12.75 -148.98 -1.90 -0.81 16 18 Si 0.76 -4.70 29.82 68.60 2.05 -2.65 16 19 C -0.05 -0.04 9.76 22.45 0.22 0.18 16 20 C -0.12 -0.50 9.63 22.61 0.22 -0.28 16 21 C -0.12 0.41 7.39 31.12 0.23 0.64 16 22 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 23 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.06 -0.18 8.14 -2.38 -0.02 -0.19 16 26 H 0.06 -0.17 7.84 -2.39 -0.02 -0.19 16 27 H 0.09 0.00 7.90 -2.38 -0.02 -0.02 16 28 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.42 -0.40 8.06 -92.71 -0.75 -1.15 16 30 H 0.19 -1.05 4.89 -2.91 -0.01 -1.07 16 31 H 0.11 -1.05 7.96 -2.38 -0.02 -1.07 16 32 H 0.40 -3.95 8.74 -74.06 -0.65 -4.60 16 33 H -0.29 -0.31 7.11 99.48 0.71 0.40 16 34 H -0.28 0.49 7.11 99.48 0.71 1.20 16 35 H 0.16 -0.48 8.06 -2.91 -0.02 -0.51 16 36 H 0.15 0.63 7.64 -2.91 -0.02 0.61 16 37 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.11 -0.71 8.08 -2.39 -0.02 -0.73 16 Total: 0.00 -19.04 323.84 -1.30 -20.34 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: -0.27 Total: -7.34 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 4.60 Total: 10.19 kcal Atomic # 7 Polarization: -3.45 SS G_CDS: -4.13 Total: -7.58 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -3.55 Total: -12.96 kcal Atomic # 14 Polarization: -4.70 SS G_CDS: 2.05 Total: -2.65 kcal Total: -19.04 -1.30 -20.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13287726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.887 kcal (2) G-P(sol) polarization free energy of solvation -19.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds