Wall clock time and date at job start Sat Mar 6 2021 20:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00217 * 2 1 4 4 C 1.53001 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.84746 * 43.80548 * 4 3 2 6 6 C 1.53781 * 113.61341 * 174.99918 * 4 3 2 7 7 C 1.53781 * 87.08070 * 140.06609 * 6 4 3 8 8 H 1.09002 * 113.61445 * 89.11830 * 7 6 4 9 9 N 1.46497 * 113.61305 * 219.93536 * 7 6 4 10 10 C 1.34780 * 119.99653 * 203.46742 * 9 7 6 11 11 O 1.21577 * 120.00375 * 0.02562 * 10 9 7 12 12 C 1.47612 * 119.99490 * 179.97438 * 10 9 7 13 13 C 1.39705 * 120.09085 * 359.73069 * 12 10 9 14 14 C 1.37724 * 119.91199 * 179.71790 * 13 12 10 15 15 C 1.50700 * 119.95714 * 180.25571 * 14 13 12 16 16 C 1.38977 * 120.08915 * 0.57645 * 14 13 12 17 17 O 1.35702 * 119.91777 * 179.69773 * 16 14 13 18 18 C 1.39023 * 120.17210 * 359.67697 * 16 14 13 19 19 C 1.50702 * 119.95484 * 180.02562 * 18 16 14 20 20 O 1.42892 * 109.46977 * 75.02128 * 19 18 16 21 21 Si 1.86307 * 109.46868 * 195.02135 * 19 18 16 22 22 C 1.37684 * 120.08913 * 0.04424 * 18 16 14 23 23 C 1.53786 * 87.17350 * 334.52830 * 7 6 4 24 24 H 1.08996 * 109.47445 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46823 * 300.00318 * 1 2 3 26 26 H 1.09003 * 109.47138 * 59.99371 * 1 2 3 27 27 H 1.09002 * 109.46916 * 60.00174 * 3 2 1 28 28 H 1.08998 * 109.46991 * 300.00269 * 3 2 1 29 29 H 1.08999 * 113.61181 * 25.51665 * 6 4 3 30 30 H 1.09000 * 113.69133 * 254.62492 * 6 4 3 31 31 H 0.96995 * 120.00146 * 23.47603 * 9 7 6 32 32 H 1.08004 * 120.04252 * 359.97438 * 13 12 10 33 33 H 1.09001 * 109.47011 * 270.31988 * 15 14 13 34 34 H 1.08995 * 109.47597 * 30.32044 * 15 14 13 35 35 H 1.09004 * 109.47333 * 150.32677 * 15 14 13 36 36 H 0.96695 * 114.00145 * 269.98155 * 17 16 14 37 37 H 1.09005 * 109.46756 * 315.01928 * 19 18 16 38 38 H 0.96698 * 114.00535 * 299.99534 * 20 19 18 39 39 H 1.48501 * 109.99635 * 59.99966 * 21 19 18 40 40 H 1.48500 * 109.99518 * 181.31323 * 21 19 18 41 41 H 1.08002 * 120.04356 * 179.97438 * 22 18 16 42 42 H 1.08992 * 113.61675 * 140.02412 * 23 7 6 43 43 H 1.09000 * 113.60973 * 270.92699 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8998 0.4286 -0.6963 6 6 4.2604 2.5353 -0.1235 7 6 5.2692 1.9982 0.9054 8 1 6.1076 1.4647 0.4576 9 7 5.6914 2.9975 1.8900 10 6 6.8679 2.8556 2.5321 11 8 7.5790 1.8986 2.2939 12 6 7.2936 3.8628 3.5237 13 6 6.4811 4.9667 3.7939 14 6 6.8792 5.9012 4.7241 15 6 6.0008 7.0893 5.0205 16 6 8.0929 5.7534 5.3848 17 8 8.4845 6.6794 6.2961 18 6 8.9067 4.6591 5.1148 19 6 10.2215 4.5034 5.8346 20 8 9.9821 4.0754 7.1767 21 14 11.2646 3.2349 4.9549 22 6 8.5132 3.7175 4.1905 23 6 4.1483 1.0732 1.4083 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.6745 3.3798 0.2391 30 1 4.6932 2.7120 -1.1082 31 1 5.1243 3.7611 2.0798 32 1 5.5401 5.0849 3.2771 33 1 6.2584 7.9082 4.3489 34 1 4.9562 6.8145 4.8744 35 1 6.1526 7.4048 6.0528 36 1 9.0016 7.4056 5.9217 37 1 10.7449 5.4595 5.8459 38 1 9.4440 4.6891 7.6952 39 1 11.5207 3.6684 3.5578 40 1 12.5511 3.0490 5.6729 41 1 9.1462 2.8679 3.9811 42 1 4.4903 0.0692 1.6591 43 1 3.5318 1.5189 2.1890 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_13287732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:23 Heat of formation + Delta-G solvation = -109.935738 kcal Electronic energy + Delta-G solvation = -25216.393186 eV Core-core repulsion = 21422.069200 eV Total energy + Delta-G solvation = -3794.323986 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81646 -40.92090 -39.70086 -38.21932 -37.75363 -37.53839 -34.82970 -33.97391 -31.83377 -29.57327 -28.01127 -27.07248 -26.81969 -26.60268 -25.13262 -23.01261 -22.14996 -21.55661 -20.57970 -19.53345 -18.78595 -18.09967 -17.90311 -17.37733 -16.95793 -16.79433 -16.73586 -16.21648 -16.08085 -15.74717 -15.69166 -15.33764 -14.95195 -14.67078 -14.32598 -14.14513 -13.97478 -13.75507 -13.43215 -13.37448 -13.16156 -13.00948 -12.89460 -12.80243 -12.39179 -12.28443 -12.14345 -12.05861 -11.64606 -11.39218 -11.34658 -11.19680 -10.99472 -10.57253 -10.16428 -9.95566 -9.67610 -4.94873 -0.42995 0.06437 1.26880 1.50386 1.60950 1.81059 2.03858 2.54879 2.83788 3.04030 3.37472 3.45808 3.56224 3.61423 3.65354 3.82296 3.84637 3.92130 4.00996 4.05365 4.29792 4.31898 4.39248 4.41912 4.50107 4.55594 4.61086 4.61641 4.69530 4.72729 4.79969 4.80727 4.83800 4.86883 5.01105 5.03188 5.07718 5.09565 5.19352 5.25651 5.29156 5.53766 5.59687 6.26271 6.45286 6.56403 6.63576 7.11860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.069 3.931 4 C -0.107 4.107 5 H 0.092 0.908 6 C -0.119 4.119 7 C 0.117 3.883 8 H 0.097 0.903 9 N -0.699 5.699 10 C 0.557 3.443 11 O -0.575 6.575 12 C -0.149 4.149 13 C -0.057 4.057 14 C -0.116 4.116 15 C -0.111 4.111 16 C 0.146 3.854 17 O -0.496 6.496 18 C -0.154 4.154 19 C -0.066 4.066 20 O -0.547 6.547 21 Si 0.772 3.228 22 C -0.059 4.059 23 C -0.144 4.144 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.416 0.584 32 H 0.165 0.835 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.413 0.587 37 H 0.086 0.914 38 H 0.378 0.622 39 H -0.270 1.270 40 H -0.286 1.286 41 H 0.136 0.864 42 H 0.056 0.944 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 7.295 -1.773 10.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.007 4.007 4 C -0.126 4.126 5 H 0.111 0.889 6 C -0.157 4.157 7 C 0.012 3.988 8 H 0.115 0.885 9 N -0.351 5.351 10 C 0.346 3.654 11 O -0.456 6.456 12 C -0.152 4.152 13 C -0.076 4.076 14 C -0.117 4.117 15 C -0.168 4.168 16 C 0.100 3.900 17 O -0.310 6.310 18 C -0.155 4.155 19 C -0.176 4.176 20 O -0.354 6.354 21 Si 0.675 3.325 22 C -0.078 4.078 23 C -0.182 4.182 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.254 0.746 32 H 0.182 0.818 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.274 0.726 37 H 0.104 0.896 38 H 0.228 0.772 39 H -0.195 1.195 40 H -0.213 1.213 41 H 0.154 0.846 42 H 0.075 0.925 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.294 5.468 -2.167 7.913 hybrid contribution -0.190 1.992 0.315 2.026 sum -5.484 7.461 -1.852 9.442 Atomic orbital electron populations 1.22879 0.79830 1.03502 1.00822 1.87864 1.21107 1.29355 1.95600 1.22636 0.92546 0.84276 1.01224 1.22342 0.93323 0.99054 0.97852 0.88933 1.23293 0.95784 0.96923 0.99656 1.22528 0.96006 0.90436 0.89853 0.88459 1.45766 1.20286 1.27772 1.41255 1.18423 0.81408 0.84911 0.80663 1.90789 1.55054 1.33519 1.66207 1.19860 0.97133 0.97526 1.00665 1.21389 0.99385 0.91027 0.95769 1.20439 0.95946 0.99075 0.96244 1.20772 0.98675 0.94203 1.03124 1.18405 0.92494 0.89803 0.89302 1.84662 1.75006 1.37386 1.33954 1.20591 0.98588 0.96983 0.99362 1.25195 0.97778 1.07740 0.86854 1.86710 1.75566 1.51235 1.21914 0.91898 0.77065 0.88173 0.75382 1.21010 0.95436 0.97423 0.93918 1.23578 0.97265 1.00010 0.97373 0.89306 0.93191 0.93139 0.91976 0.92000 0.86956 0.89397 0.74554 0.81790 0.89611 0.89642 0.90960 0.72594 0.89627 0.77240 1.19524 1.21261 0.84636 0.92478 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.45 10.70 -148.98 -1.59 -3.05 16 3 C 0.07 -0.17 5.78 71.98 0.42 0.25 16 4 C -0.11 0.26 4.01 -10.18 -0.04 0.22 16 5 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 6 C -0.12 0.78 7.39 31.12 0.23 1.01 16 7 C 0.12 -0.13 4.21 45.52 0.19 0.06 16 8 H 0.10 0.37 7.50 -2.39 -0.02 0.35 16 9 N -0.70 1.53 5.31 -443.12 -2.35 -0.83 16 10 C 0.56 2.86 7.76 86.72 0.67 3.53 16 11 O -0.58 -7.93 15.96 -3.96 -0.06 -8.00 16 12 C -0.15 -0.34 5.88 -20.08 -0.12 -0.45 16 13 C -0.06 0.23 9.18 22.50 0.21 0.44 16 14 C -0.12 0.42 5.89 -19.81 -0.12 0.30 16 15 C -0.11 0.89 9.78 71.24 0.70 1.59 16 16 C 0.15 -0.16 6.62 22.64 0.15 -0.01 16 17 O -0.50 2.21 11.41 -90.22 -1.03 1.18 16 18 C -0.15 -0.36 5.27 -19.81 -0.10 -0.46 16 19 C -0.07 -0.18 2.33 71.24 0.17 -0.01 16 20 O -0.55 -2.62 12.65 -148.98 -1.89 -4.50 16 21 Si 0.77 3.65 30.17 68.60 2.07 5.72 16 22 C -0.06 -0.28 8.20 22.51 0.18 -0.09 16 23 C -0.14 0.09 7.45 31.21 0.23 0.32 16 24 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 26 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.06 -0.31 7.86 -2.39 -0.02 -0.33 16 28 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.11 -1.25 8.07 -2.39 -0.02 -1.27 16 30 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.42 -3.87 6.73 -92.71 -0.62 -4.49 16 32 H 0.16 -1.88 6.39 -2.91 -0.02 -1.89 16 33 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H 0.08 -0.89 8.08 -2.39 -0.02 -0.90 16 35 H 0.07 -0.45 7.52 -2.39 -0.02 -0.47 16 36 H 0.41 -5.14 9.06 -74.06 -0.67 -5.81 16 37 H 0.09 -0.04 7.82 -2.38 -0.02 -0.06 16 38 H 0.38 0.09 8.60 -74.06 -0.64 -0.55 16 39 H -0.27 -2.11 7.11 99.48 0.71 -1.40 16 40 H -0.29 -2.91 7.11 99.48 0.71 -2.20 16 41 H 0.14 0.79 4.70 -2.91 -0.01 0.78 16 42 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.09 -0.25 7.91 -2.39 -0.02 -0.27 16 Total: 0.00 -20.75 356.56 -1.68 -22.42 By element: Atomic # 1 Polarization: -20.02 SS G_CDS: -0.84 Total: -20.86 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 4.02 Total: 7.90 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -2.35 Total: -0.83 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -4.57 Total: -14.36 kcal Atomic # 14 Polarization: 3.65 SS G_CDS: 2.07 Total: 5.72 kcal Total: -20.75 -1.68 -22.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13287732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.512 kcal (2) G-P(sol) polarization free energy of solvation -20.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds