Wall clock time and date at job start Sat Mar 6 2021 20:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 H 1.08992 * 112.85173 * 43.80095 * 4 3 2 6 6 C 1.53787 * 113.61228 * 175.00079 * 4 3 2 7 7 C 1.53776 * 87.07971 * 139.97805 * 6 4 3 8 8 H 1.09004 * 113.61682 * 89.11771 * 7 6 4 9 9 N 1.46507 * 113.61558 * 220.01556 * 7 6 4 10 10 C 1.34766 * 120.00093 * 205.00202 * 9 7 6 11 11 O 1.21555 * 120.00307 * 0.02562 * 10 9 7 12 12 C 1.47844 * 120.00040 * 179.97438 * 10 9 7 13 13 C 1.39525 * 120.55690 * 359.72655 * 12 10 9 14 14 N 1.31692 * 120.56377 * 179.68090 * 13 12 10 15 15 C 1.31919 * 121.88362 * 0.63010 * 14 13 12 16 16 C 1.38356 * 121.07652 * 359.65587 * 15 14 13 17 17 C 1.50704 * 120.34729 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47345 * 119.97504 * 17 16 15 19 19 Si 1.86298 * 109.47136 * 359.97387 * 17 16 15 20 20 C 1.38355 * 119.30501 * 0.02562 * 16 15 14 21 21 C 1.53781 * 87.08649 * 334.56685 * 7 6 4 22 22 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 23 23 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 24 24 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 26 26 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 27 27 H 1.08999 * 113.61008 * 254.52793 * 6 4 3 28 28 H 1.08993 * 113.61117 * 25.42890 * 6 4 3 29 29 H 0.97002 * 119.99477 * 25.00218 * 9 7 6 30 30 H 1.08000 * 119.71445 * 359.97438 * 13 12 10 31 31 H 1.07994 * 119.46713 * 179.67966 * 15 14 13 32 32 H 1.09001 * 109.47223 * 239.97517 * 17 16 15 33 33 H 0.96694 * 113.99885 * 300.00356 * 18 17 16 34 34 H 1.48504 * 110.00055 * 58.68629 * 19 17 16 35 35 H 1.48502 * 109.99893 * 179.97438 * 19 17 16 36 36 H 1.08002 * 120.85803 * 180.02562 * 20 16 15 37 37 H 1.08998 * 113.61029 * 270.89062 * 21 7 6 38 38 H 1.08997 * 113.61702 * 139.98220 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8998 0.4288 -0.6961 6 6 4.2602 2.5355 -0.1235 7 6 5.2677 1.9993 0.9072 8 1 6.1068 1.4656 0.4608 9 7 5.6871 2.9989 1.8928 10 6 6.8764 2.8746 2.5144 11 8 7.6014 1.9335 2.2570 12 6 7.2998 3.8836 3.5086 13 6 6.4798 4.9720 3.8081 14 7 6.8541 5.8675 4.6982 15 6 8.0100 5.7828 5.3282 16 6 8.8820 4.7370 5.0832 17 6 10.1982 4.6562 5.8128 18 8 10.2540 3.4403 6.5616 19 14 10.3563 6.1067 6.9711 20 6 8.5330 3.7661 4.1613 21 6 4.1452 1.0747 1.4069 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6885 1.8465 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 4.6940 2.7102 -1.1081 28 1 3.6737 3.3801 0.2378 29 1 5.1087 3.7501 2.0980 30 1 5.5280 5.0785 3.3090 31 1 8.2800 6.5420 6.0473 32 1 11.0153 4.6764 5.0916 33 1 9.5548 3.3540 7.2239 34 1 9.2305 6.1083 7.9396 35 1 11.6499 6.0382 7.6971 36 1 9.1944 2.9387 3.9510 37 1 3.5272 1.5201 2.1864 38 1 4.4860 0.0702 1.6577 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12906260_13287814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:30 Heat of formation + Delta-G solvation = -45.427703 kcal Electronic energy + Delta-G solvation = -21062.416674 eV Core-core repulsion = 17679.683866 eV Total energy + Delta-G solvation = -3382.732808 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97667 -40.95217 -39.58436 -38.22227 -38.09204 -34.90173 -33.78853 -32.98139 -29.75440 -27.37499 -27.13016 -26.78564 -25.86983 -23.93833 -23.21802 -21.66372 -20.77623 -19.23053 -18.33974 -17.95828 -17.82407 -17.48115 -17.05057 -16.85625 -16.54577 -16.20450 -15.95174 -15.81277 -15.68760 -14.89545 -14.68697 -14.41792 -14.24861 -14.02448 -13.62539 -13.50753 -13.26658 -13.07316 -12.83875 -12.48455 -12.15358 -12.10888 -11.77410 -11.48155 -11.32416 -11.08663 -10.75313 -10.64510 -10.56131 -10.40384 -10.11234 -5.09734 -0.60374 -0.04957 1.10007 1.46158 1.69512 1.83771 1.95185 2.59940 2.71726 2.98271 3.19714 3.33508 3.35873 3.48482 3.57108 3.66360 3.71634 3.72248 3.80131 4.07148 4.15622 4.22596 4.27181 4.36554 4.43319 4.44892 4.47921 4.54116 4.64391 4.70041 4.74363 4.81786 4.88915 4.91440 4.99076 5.16286 5.26990 5.44851 6.15716 6.24314 6.31607 6.59444 7.05152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.390 6.390 3 C 0.072 3.928 4 C -0.107 4.107 5 H 0.105 0.895 6 C -0.138 4.138 7 C 0.122 3.878 8 H 0.120 0.880 9 N -0.715 5.715 10 C 0.566 3.434 11 O -0.527 6.527 12 C -0.188 4.188 13 C 0.139 3.861 14 N -0.478 5.478 15 C 0.128 3.872 16 C -0.178 4.178 17 C -0.071 4.071 18 O -0.525 6.525 19 Si 0.686 3.314 20 C 0.012 3.988 21 C -0.144 4.144 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.400 0.600 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.125 0.875 33 H 0.377 0.623 34 H -0.255 1.255 35 H -0.251 1.251 36 H 0.153 0.847 37 H 0.086 0.914 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 4.610 -1.081 5.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.126 4.126 5 H 0.123 0.877 6 C -0.176 4.176 7 C 0.018 3.982 8 H 0.138 0.862 9 N -0.366 5.366 10 C 0.352 3.648 11 O -0.404 6.404 12 C -0.194 4.194 13 C -0.019 4.019 14 N -0.185 5.185 15 C -0.028 4.028 16 C -0.180 4.180 17 C -0.182 4.182 18 O -0.331 6.331 19 Si 0.586 3.414 20 C -0.015 4.015 21 C -0.183 4.183 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.236 0.764 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.143 0.857 33 H 0.225 0.775 34 H -0.180 1.180 35 H -0.175 1.175 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.698 4.619 -0.634 5.386 hybrid contribution -0.596 -1.087 0.346 1.287 sum -3.293 3.532 -0.288 4.838 Atomic orbital electron populations 1.22766 0.80773 1.03045 1.00019 1.87901 1.19854 1.27761 1.95402 1.22515 0.92759 0.84960 1.00240 1.22336 0.93189 0.98366 0.98669 0.87663 1.23371 0.96980 0.97167 1.00075 1.22582 0.96495 0.90002 0.89131 0.86166 1.45883 1.19601 1.28556 1.42529 1.18045 0.81335 0.84899 0.80532 1.90823 1.53210 1.32454 1.63876 1.21053 0.97879 0.98606 1.01824 1.23030 0.98283 0.88340 0.92278 1.67727 1.16390 1.27211 1.07204 1.22897 0.88707 0.95326 0.95843 1.21378 0.99172 0.97239 1.00207 1.25002 0.96102 0.96795 1.00266 1.86646 1.55671 1.37561 1.53259 0.95095 0.81108 0.83451 0.81788 1.21642 0.93772 0.96629 0.89433 1.23540 0.97041 1.00991 0.96706 0.94037 0.93969 0.89440 0.93141 0.92998 0.89911 0.89237 0.76380 0.82202 0.81988 0.85726 0.77486 1.17972 1.17510 0.82973 0.89586 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 101.05 1.11 1.09 16 2 O -0.39 -0.66 10.70 -35.23 -0.38 -1.04 16 3 C 0.07 -0.06 5.77 37.16 0.21 0.16 16 4 C -0.11 0.14 4.01 -89.80 -0.36 -0.22 16 5 H 0.11 -0.06 8.14 -51.93 -0.42 -0.49 16 6 C -0.14 0.39 7.39 -25.92 -0.19 0.19 16 7 C 0.12 -0.11 4.24 -67.12 -0.28 -0.40 16 8 H 0.12 0.10 7.47 -51.93 -0.39 -0.29 16 9 N -0.71 0.88 5.31 -53.96 -0.29 0.59 16 10 C 0.57 1.00 7.78 -12.33 -0.10 0.90 16 11 O -0.53 -3.00 16.02 5.32 0.09 -2.92 16 12 C -0.19 -0.11 5.89 -104.82 -0.62 -0.72 16 13 C 0.14 -0.11 10.71 -17.13 -0.18 -0.30 16 14 N -0.48 -0.24 10.35 -12.91 -0.13 -0.37 16 15 C 0.13 -0.08 9.84 -17.47 -0.17 -0.25 16 16 C -0.18 0.09 5.39 -104.53 -0.56 -0.47 16 17 C -0.07 0.09 2.83 36.01 0.10 0.19 16 18 O -0.53 -0.28 12.78 -35.23 -0.45 -0.74 16 19 Si 0.69 -1.51 29.82 -169.99 -5.07 -6.57 16 20 C 0.01 0.01 9.31 -38.87 -0.36 -0.35 16 21 C -0.14 0.10 7.43 -25.92 -0.19 -0.09 16 22 H 0.04 -0.06 8.14 -51.93 -0.42 -0.49 16 23 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 24 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 25 H 0.05 -0.09 7.84 -51.93 -0.41 -0.49 16 26 H 0.05 -0.08 8.14 -51.93 -0.42 -0.51 16 27 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 28 H 0.09 -0.37 8.08 -51.93 -0.42 -0.79 16 29 H 0.40 -1.63 6.79 -40.82 -0.28 -1.91 16 30 H 0.16 -0.65 6.42 -52.49 -0.34 -0.99 16 31 H 0.16 -0.46 4.88 -52.49 -0.26 -0.71 16 32 H 0.13 -0.24 7.96 -51.93 -0.41 -0.65 16 33 H 0.38 -0.88 8.70 45.56 0.40 -0.48 16 34 H -0.26 0.10 7.11 56.52 0.40 0.50 16 35 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 36 H 0.15 0.26 7.74 -52.49 -0.41 -0.14 16 37 H 0.09 -0.10 7.90 -51.93 -0.41 -0.51 16 38 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 LS Contribution 321.58 15.07 4.85 4.85 Total: 0.00 -8.35 321.58 -8.05 -16.41 By element: Atomic # 1 Polarization: -4.86 SS G_CDS: -5.07 Total: -9.93 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -1.59 Total: -0.27 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -0.42 Total: 0.22 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.74 Total: -4.69 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: -5.07 Total: -6.57 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -8.35 -8.05 -16.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13287814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.020 kcal (2) G-P(sol) polarization free energy of solvation -8.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds