Wall clock time and date at job start Sat Mar 6 2021 20:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 H 1.08992 * 112.85173 * 43.80095 * 4 3 2 6 6 C 1.53787 * 113.61228 * 175.00079 * 4 3 2 7 7 C 1.53776 * 87.07971 * 139.97805 * 6 4 3 8 8 H 1.09004 * 113.61682 * 89.11771 * 7 6 4 9 9 N 1.46507 * 113.61558 * 220.01556 * 7 6 4 10 10 C 1.34766 * 120.00093 * 205.00202 * 9 7 6 11 11 O 1.21555 * 120.00307 * 0.02562 * 10 9 7 12 12 C 1.47844 * 120.00040 * 179.97438 * 10 9 7 13 13 C 1.39525 * 120.55690 * 359.72655 * 12 10 9 14 14 N 1.31692 * 120.56377 * 179.68090 * 13 12 10 15 15 C 1.31919 * 121.88362 * 0.63010 * 14 13 12 16 16 C 1.38356 * 121.07652 * 359.65587 * 15 14 13 17 17 C 1.50704 * 120.34729 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47345 * 119.97504 * 17 16 15 19 19 Si 1.86298 * 109.47136 * 359.97387 * 17 16 15 20 20 C 1.38355 * 119.30501 * 0.02562 * 16 15 14 21 21 C 1.53781 * 87.08649 * 334.56685 * 7 6 4 22 22 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 23 23 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 24 24 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 26 26 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 27 27 H 1.08999 * 113.61008 * 254.52793 * 6 4 3 28 28 H 1.08993 * 113.61117 * 25.42890 * 6 4 3 29 29 H 0.97002 * 119.99477 * 25.00218 * 9 7 6 30 30 H 1.08000 * 119.71445 * 359.97438 * 13 12 10 31 31 H 1.07994 * 119.46713 * 179.67966 * 15 14 13 32 32 H 1.09001 * 109.47223 * 239.97517 * 17 16 15 33 33 H 0.96694 * 113.99885 * 300.00356 * 18 17 16 34 34 H 1.48504 * 110.00055 * 58.68629 * 19 17 16 35 35 H 1.48502 * 109.99893 * 179.97438 * 19 17 16 36 36 H 1.08002 * 120.85803 * 180.02562 * 20 16 15 37 37 H 1.08998 * 113.61029 * 270.89062 * 21 7 6 38 38 H 1.08997 * 113.61702 * 139.98220 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8998 0.4288 -0.6961 6 6 4.2602 2.5355 -0.1235 7 6 5.2677 1.9993 0.9072 8 1 6.1068 1.4656 0.4608 9 7 5.6871 2.9989 1.8928 10 6 6.8764 2.8746 2.5144 11 8 7.6014 1.9335 2.2570 12 6 7.2998 3.8836 3.5086 13 6 6.4798 4.9720 3.8081 14 7 6.8541 5.8675 4.6982 15 6 8.0100 5.7828 5.3282 16 6 8.8820 4.7370 5.0832 17 6 10.1982 4.6562 5.8128 18 8 10.2540 3.4403 6.5616 19 14 10.3563 6.1067 6.9711 20 6 8.5330 3.7661 4.1613 21 6 4.1452 1.0747 1.4069 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6885 1.8465 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 4.6940 2.7102 -1.1081 28 1 3.6737 3.3801 0.2378 29 1 5.1087 3.7501 2.0980 30 1 5.5280 5.0785 3.3090 31 1 8.2800 6.5420 6.0473 32 1 11.0153 4.6764 5.0916 33 1 9.5548 3.3540 7.2239 34 1 9.2305 6.1083 7.9396 35 1 11.6499 6.0382 7.6971 36 1 9.1944 2.9387 3.9510 37 1 3.5272 1.5201 2.1864 38 1 4.4860 0.0702 1.6577 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_13287814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:29 Heat of formation + Delta-G solvation = -47.577641 kcal Electronic energy + Delta-G solvation = -21062.509902 eV Core-core repulsion = 17679.683866 eV Total energy + Delta-G solvation = -3382.826036 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.98615 -40.92098 -39.63876 -38.21359 -38.08468 -34.97306 -33.79114 -32.95224 -29.68005 -27.32014 -27.06881 -26.69056 -25.85349 -23.91919 -23.16737 -21.71328 -20.70036 -19.22213 -18.30363 -17.92391 -17.83542 -17.43382 -17.01099 -16.79832 -16.53334 -16.21345 -16.00703 -15.81077 -15.65078 -14.91848 -14.66679 -14.39211 -14.24727 -13.98448 -13.49237 -13.44807 -13.19379 -12.99588 -12.81991 -12.43136 -12.13735 -12.08143 -11.67058 -11.46636 -11.36828 -11.12031 -10.72421 -10.59747 -10.57368 -10.38653 -10.09858 -4.94973 -0.58906 -0.04561 1.21779 1.57995 1.62302 1.90962 1.98727 2.60899 2.81674 3.09379 3.30855 3.38908 3.44615 3.59160 3.64009 3.70947 3.74857 3.78905 3.89615 4.09218 4.25454 4.32620 4.39162 4.48711 4.52179 4.53622 4.60081 4.70627 4.75422 4.81742 4.82788 4.85400 4.92190 4.98708 5.05108 5.20237 5.31316 5.51398 6.24522 6.35770 6.39589 6.63966 7.02367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.069 3.931 4 C -0.107 4.107 5 H 0.092 0.908 6 C -0.119 4.119 7 C 0.116 3.884 8 H 0.097 0.903 9 N -0.696 5.696 10 C 0.564 3.436 11 O -0.577 6.577 12 C -0.197 4.197 13 C 0.148 3.852 14 N -0.493 5.493 15 C 0.130 3.870 16 C -0.174 4.174 17 C -0.084 4.084 18 O -0.548 6.548 19 Si 0.777 3.223 20 C -0.003 4.003 21 C -0.144 4.144 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.417 0.583 30 H 0.193 0.807 31 H 0.185 0.815 32 H 0.129 0.871 33 H 0.387 0.613 34 H -0.272 1.272 35 H -0.299 1.299 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 6.515 -1.087 8.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.007 4.007 4 C -0.126 4.126 5 H 0.111 0.889 6 C -0.157 4.157 7 C 0.012 3.988 8 H 0.115 0.885 9 N -0.348 5.348 10 C 0.351 3.649 11 O -0.458 6.458 12 C -0.202 4.202 13 C -0.010 4.010 14 N -0.201 5.201 15 C -0.026 4.026 16 C -0.176 4.176 17 C -0.192 4.192 18 O -0.356 6.356 19 Si 0.681 3.319 20 C -0.030 4.030 21 C -0.183 4.183 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.132 0.868 29 H 0.256 0.744 30 H 0.210 0.790 31 H 0.201 0.799 32 H 0.147 0.853 33 H 0.237 0.763 34 H -0.198 1.198 35 H -0.227 1.227 36 H 0.153 0.847 37 H 0.114 0.886 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.150 6.544 -0.666 7.778 hybrid contribution -0.150 -1.722 0.371 1.768 sum -4.300 4.822 -0.295 6.467 Atomic orbital electron populations 1.22881 0.79804 1.03505 1.00850 1.87862 1.21135 1.29382 1.95609 1.22643 0.92511 0.84267 1.01294 1.22298 0.93387 0.99119 0.97797 0.88931 1.23310 0.95735 0.96949 0.99657 1.22543 0.96061 0.90383 0.89840 0.88464 1.45762 1.18793 1.28715 1.41508 1.18291 0.81615 0.84458 0.80545 1.90799 1.54838 1.34506 1.65610 1.21006 0.98190 0.99068 1.01977 1.23462 0.98918 0.87069 0.91569 1.67817 1.16832 1.27625 1.07781 1.23231 0.88249 0.95382 0.95696 1.21370 0.99464 0.96967 0.99802 1.25317 0.96037 0.97006 1.00880 1.86614 1.56413 1.38701 1.53861 0.94082 0.77153 0.81492 0.79195 1.21646 0.94120 0.96810 0.90394 1.23543 0.97263 0.99939 0.97515 0.93183 0.93103 0.89311 0.91926 0.91948 0.89329 0.86797 0.74392 0.78991 0.79905 0.85318 0.76312 1.19848 1.22687 0.84721 0.88550 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.48 10.70 -148.98 -1.59 -3.08 16 3 C 0.07 -0.16 5.77 71.98 0.42 0.25 16 4 C -0.11 0.27 4.01 -10.26 -0.04 0.23 16 5 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 6 C -0.12 0.79 7.39 31.12 0.23 1.02 16 7 C 0.12 -0.15 4.24 45.51 0.19 0.04 16 8 H 0.10 0.37 7.47 -2.38 -0.02 0.35 16 9 N -0.70 1.87 5.31 -442.91 -2.35 -0.48 16 10 C 0.56 2.59 7.78 86.79 0.68 3.27 16 11 O -0.58 -8.06 16.02 -3.89 -0.06 -8.12 16 12 C -0.20 -0.31 5.89 -19.99 -0.12 -0.42 16 13 C 0.15 -0.42 10.71 85.02 0.91 0.49 16 14 N -0.49 0.20 10.35 -194.76 -2.01 -1.82 16 15 C 0.13 -0.30 9.84 84.71 0.83 0.54 16 16 C -0.17 0.14 5.39 -19.81 -0.11 0.03 16 17 C -0.08 0.17 2.83 71.24 0.20 0.37 16 18 O -0.55 -1.14 12.78 -148.98 -1.90 -3.04 16 19 Si 0.78 -3.69 29.82 68.60 2.05 -1.65 16 20 C 0.00 -0.01 9.31 22.73 0.21 0.20 16 21 C -0.14 0.12 7.43 31.12 0.23 0.35 16 22 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 23 H 0.05 -0.19 8.14 -2.38 -0.02 -0.21 16 24 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.06 -0.31 7.84 -2.39 -0.02 -0.33 16 26 H 0.06 -0.29 8.14 -2.39 -0.02 -0.30 16 27 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 28 H 0.11 -1.28 8.08 -2.39 -0.02 -1.30 16 29 H 0.42 -4.14 6.79 -92.71 -0.63 -4.77 16 30 H 0.19 -2.04 6.42 -2.91 -0.02 -2.06 16 31 H 0.18 -1.35 4.88 -2.91 -0.01 -1.36 16 32 H 0.13 -0.41 7.96 -2.39 -0.02 -0.43 16 33 H 0.39 -1.49 8.70 -74.06 -0.64 -2.13 16 34 H -0.27 0.49 7.11 99.48 0.71 1.20 16 35 H -0.30 -1.03 7.11 99.48 0.71 -0.32 16 36 H 0.13 0.85 7.74 -2.91 -0.02 0.83 16 37 H 0.10 -0.29 7.90 -2.39 -0.02 -0.31 16 38 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 Total: 0.00 -21.57 321.58 -1.14 -22.71 By element: Atomic # 1 Polarization: -11.95 SS G_CDS: -0.15 Total: -12.09 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 4.89 Total: 7.57 kcal Atomic # 7 Polarization: 2.07 SS G_CDS: -4.37 Total: -2.30 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -3.56 Total: -14.24 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.05 Total: -1.65 kcal Total: -21.57 -1.14 -22.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13287814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.871 kcal (2) G-P(sol) polarization free energy of solvation -21.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds