Wall clock time and date at job start Sat Mar 6 2021 20:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99766 * 2 1 4 4 C 1.53000 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.84949 * 45.33633 * 4 3 2 6 6 C 1.53781 * 113.61707 * 176.53192 * 4 3 2 7 7 C 1.53777 * 87.08336 * 140.06298 * 6 4 3 8 8 H 1.09003 * 113.60961 * 89.20081 * 7 6 4 9 9 N 1.46500 * 113.61534 * 220.01705 * 7 6 4 10 10 C 1.34779 * 119.99895 * 204.99945 * 9 7 6 11 11 O 1.21585 * 120.00177 * 0.02562 * 10 9 7 12 12 C 1.47534 * 119.99751 * 180.02562 * 10 9 7 13 13 C 1.40144 * 120.18955 * 180.02562 * 12 10 9 14 14 O 1.35648 * 120.15021 * 0.02562 * 13 12 10 15 15 C 1.38709 * 119.69388 * 180.02562 * 13 12 10 16 16 C 1.38050 * 120.09353 * 359.97438 * 15 13 12 17 17 C 1.50694 * 119.81096 * 180.02562 * 16 15 13 18 18 O 1.42898 * 109.47171 * 64.99941 * 17 16 15 19 19 Si 1.86294 * 109.47325 * 185.00340 * 17 16 15 20 20 C 1.38553 * 120.38309 * 359.97438 * 16 15 13 21 21 C 1.37784 * 120.30234 * 359.76150 * 20 16 15 22 22 C 1.53775 * 87.07992 * 334.56762 * 7 6 4 23 23 H 1.09003 * 109.47132 * 299.99594 * 1 2 3 24 24 H 1.08996 * 109.47289 * 60.00008 * 1 2 3 25 25 H 1.09007 * 109.47022 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46793 * 60.00463 * 3 2 1 27 27 H 1.08992 * 109.47352 * 300.00400 * 3 2 1 28 28 H 1.08997 * 113.61673 * 254.61847 * 6 4 3 29 29 H 1.09009 * 113.61202 * 25.43077 * 6 4 3 30 30 H 0.97002 * 120.00084 * 25.00713 * 9 7 6 31 31 H 0.96698 * 114.00378 * 90.00227 * 14 13 12 32 32 H 1.08007 * 119.95406 * 180.02562 * 15 13 12 33 33 H 1.09009 * 109.46706 * 305.00030 * 17 16 15 34 34 H 0.96694 * 113.99839 * 60.00408 * 18 17 16 35 35 H 1.48500 * 110.00120 * 179.97438 * 19 17 16 36 36 H 1.48505 * 110.00221 * 301.31636 * 19 17 16 37 37 H 1.08005 * 119.84446 * 180.02562 * 20 16 15 38 38 H 1.08001 * 120.04696 * 180.28225 * 21 20 16 39 39 H 1.08993 * 113.61636 * 270.87622 * 22 7 6 40 40 H 1.09008 * 113.61006 * 139.97865 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9013 0.4475 -0.7154 6 6 4.2605 2.5381 -0.0859 7 6 5.2672 1.9739 0.9305 8 1 6.1073 1.4538 0.4703 9 7 5.6858 2.9461 1.9434 10 6 6.8747 2.8047 2.5624 11 8 7.5999 1.8706 2.2798 12 6 7.2960 3.7834 3.5828 13 6 8.5316 3.6406 4.2285 14 8 9.3466 2.6017 3.9179 15 6 8.9172 4.5665 5.1867 16 6 8.0870 5.6236 5.5014 17 6 8.5126 6.6261 6.5429 18 8 9.6652 7.3330 6.0807 19 14 7.1255 7.8317 6.8478 20 6 6.8652 5.7688 4.8644 21 6 6.4685 4.8615 3.9063 22 6 4.1441 1.0362 1.4037 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 4.6950 2.7398 -1.0650 29 1 3.6732 3.3730 0.2965 30 1 5.1073 3.6914 2.1686 31 1 9.9673 2.7895 3.2006 32 1 9.8687 4.4607 5.6866 33 1 8.7528 6.1064 7.4706 34 1 9.5240 7.8197 5.2572 35 1 7.5324 8.8253 7.8736 36 1 6.7669 8.5238 5.5837 37 1 6.2226 6.5993 5.1171 38 1 5.5172 4.9812 3.4091 39 1 3.5256 1.4601 2.1948 40 1 4.4847 0.0251 1.6273 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:37 Heat of formation + Delta-G solvation = -99.051920 kcal Electronic energy + Delta-G solvation = -23183.839750 eV Core-core repulsion = 19545.525340 eV Total energy + Delta-G solvation = -3638.314409 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.75375 -40.68032 -39.46982 -38.52719 -38.08207 -37.23000 -34.76337 -32.66406 -31.10828 -29.66348 -27.61860 -26.87165 -26.54570 -24.20426 -23.90905 -22.76250 -21.59206 -20.74864 -19.40820 -18.65926 -18.30420 -17.74236 -17.26803 -16.86322 -16.75126 -16.50488 -16.30367 -16.05312 -15.96937 -15.65879 -15.47000 -15.20714 -14.81377 -14.38741 -13.99086 -13.74527 -13.43958 -13.22220 -13.18706 -13.02745 -12.90544 -12.41231 -12.35098 -12.14851 -12.04207 -11.65133 -11.57911 -11.39289 -10.93497 -10.62800 -10.57181 -10.22108 -9.98469 -9.77674 -4.88912 -0.41873 0.14889 1.28560 1.61585 1.69842 1.99575 2.06285 2.56388 2.83553 3.10770 3.40693 3.44043 3.50891 3.62049 3.70075 3.77246 3.83817 3.91457 4.08273 4.27423 4.32967 4.39820 4.42268 4.50166 4.54892 4.61205 4.64344 4.72127 4.75825 4.79084 4.83203 4.86865 5.01650 5.03687 5.07429 5.13994 5.24307 5.26399 5.55886 5.60386 6.26318 6.46856 6.49118 6.69931 7.17475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.070 3.930 4 C -0.107 4.107 5 H 0.091 0.909 6 C -0.118 4.118 7 C 0.118 3.882 8 H 0.094 0.906 9 N -0.701 5.701 10 C 0.554 3.446 11 O -0.567 6.567 12 C -0.179 4.179 13 C 0.150 3.850 14 O -0.499 6.499 15 C -0.140 4.140 16 C -0.070 4.070 17 C -0.095 4.095 18 O -0.548 6.548 19 Si 0.780 3.220 20 C -0.132 4.132 21 C -0.052 4.052 22 C -0.144 4.144 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.416 0.584 31 H 0.406 0.594 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.388 0.612 35 H -0.308 1.308 36 H -0.267 1.267 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.096 0.904 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 6.177 -0.942 9.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.006 4.006 4 C -0.126 4.126 5 H 0.109 0.891 6 C -0.156 4.156 7 C 0.013 3.987 8 H 0.112 0.888 9 N -0.353 5.353 10 C 0.343 3.657 11 O -0.447 6.447 12 C -0.183 4.183 13 C 0.104 3.896 14 O -0.312 6.312 15 C -0.159 4.159 16 C -0.071 4.071 17 C -0.203 4.203 18 O -0.356 6.356 19 Si 0.684 3.316 20 C -0.150 4.150 21 C -0.070 4.070 22 C -0.182 4.182 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.107 0.893 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.255 0.745 31 H 0.266 0.734 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.238 0.762 35 H -0.236 1.236 36 H -0.193 1.193 37 H 0.180 0.820 38 H 0.187 0.813 39 H 0.115 0.885 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.966 5.615 -0.230 8.951 hybrid contribution 1.128 0.532 -1.023 1.613 sum -5.838 6.148 -1.252 8.570 Atomic orbital electron populations 1.22882 0.79791 1.03494 1.00865 1.87864 1.21147 1.29380 1.95609 1.22629 0.92438 0.84275 1.01300 1.22293 0.93448 0.99020 0.97834 0.89105 1.23296 0.95787 0.96803 0.99688 1.22473 0.95887 0.90889 0.89476 0.88823 1.45762 1.19126 1.30097 1.40321 1.18403 0.81711 0.84556 0.81079 1.90808 1.54615 1.33905 1.65331 1.20466 0.97978 0.98860 1.01013 1.18784 0.90039 0.86712 0.94042 1.84713 1.51990 1.36055 1.58432 1.21344 1.01512 0.93769 0.99230 1.20487 0.94363 0.95357 0.96857 1.25475 0.97950 0.98794 0.98035 1.86607 1.35362 1.67439 1.46207 0.93892 0.81182 0.77853 0.78696 1.21282 0.95954 1.00890 0.96823 1.21497 0.99213 0.90744 0.95588 1.23527 0.97347 0.99801 0.97561 0.93093 0.93140 0.89346 0.91827 0.91989 0.89506 0.86787 0.74531 0.73399 0.84873 0.85845 0.76225 1.23627 1.19264 0.81961 0.81266 0.88542 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.50 10.70 -148.98 -1.59 -3.10 16 3 C 0.07 -0.16 5.77 71.98 0.42 0.25 16 4 C -0.11 0.23 4.01 -10.27 -0.04 0.18 16 5 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 6 C -0.12 0.75 7.39 31.12 0.23 0.98 16 7 C 0.12 -0.06 4.24 45.51 0.19 0.13 16 8 H 0.09 0.46 7.46 -2.39 -0.02 0.44 16 9 N -0.70 1.37 5.31 -443.21 -2.35 -0.98 16 10 C 0.55 3.18 7.76 86.69 0.67 3.86 16 11 O -0.57 -8.52 14.76 16.94 0.25 -8.27 16 12 C -0.18 -0.38 5.89 -20.01 -0.12 -0.50 16 13 C 0.15 0.78 6.72 22.85 0.15 0.93 16 14 O -0.50 -4.27 11.58 -68.70 -0.80 -5.07 16 15 C -0.14 -0.28 9.60 22.34 0.21 -0.07 16 16 C -0.07 0.17 5.35 -19.84 -0.11 0.07 16 17 C -0.09 0.31 2.79 71.23 0.20 0.51 16 18 O -0.55 -0.15 12.83 -148.98 -1.91 -2.06 16 19 Si 0.78 -4.74 29.87 68.60 2.05 -2.69 16 20 C -0.13 0.84 8.64 22.24 0.19 1.04 16 21 C -0.05 0.30 9.53 22.52 0.21 0.52 16 22 C -0.14 0.01 7.43 31.12 0.23 0.24 16 23 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 24 H 0.05 -0.20 8.14 -2.39 -0.02 -0.21 16 25 H 0.09 -0.23 8.14 -2.38 -0.02 -0.25 16 26 H 0.06 -0.33 7.88 -2.39 -0.02 -0.35 16 27 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.11 -1.27 8.08 -2.38 -0.02 -1.29 16 30 H 0.42 -3.98 6.76 -92.71 -0.63 -4.60 16 31 H 0.41 0.69 9.06 -74.06 -0.67 0.02 16 32 H 0.13 0.34 8.06 -2.91 -0.02 0.31 16 33 H 0.12 -0.46 7.96 -2.38 -0.02 -0.48 16 34 H 0.39 -2.35 8.70 -74.06 -0.64 -2.99 16 35 H -0.31 -0.90 7.11 99.48 0.71 -0.19 16 36 H -0.27 1.19 7.00 99.48 0.70 1.88 16 37 H 0.16 -1.92 4.81 -2.91 -0.01 -1.93 16 38 H 0.17 -2.32 6.40 -2.91 -0.02 -2.34 16 39 H 0.10 -0.23 7.92 -2.39 -0.02 -0.25 16 40 H 0.05 0.25 8.14 -2.38 -0.02 0.23 16 Total: 0.00 -24.47 335.38 -1.48 -25.95 By element: Atomic # 1 Polarization: -12.29 SS G_CDS: -0.82 Total: -13.11 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 3.70 Total: 9.32 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -2.35 Total: -0.98 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -4.05 Total: -18.50 kcal Atomic # 14 Polarization: -4.74 SS G_CDS: 2.05 Total: -2.69 kcal Total: -24.47 -1.48 -25.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.098 kcal (2) G-P(sol) polarization free energy of solvation -24.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds