Wall clock time and date at job start Sat Mar 6 2021 20:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 113.99933 * 2 1 4 4 C 1.53008 * 109.46743 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.85225 * 43.80821 * 4 3 2 6 6 C 1.53783 * 113.60949 * 175.00159 * 4 3 2 7 7 C 1.53784 * 87.08058 * 139.98367 * 6 4 3 8 8 H 1.08997 * 113.61450 * 89.19561 * 7 6 4 9 9 N 1.46503 * 113.61294 * 220.01982 * 7 6 4 10 10 C 1.34772 * 119.99712 * 204.99519 * 9 7 6 11 11 O 1.21592 * 120.00559 * 0.02562 * 10 9 7 12 12 C 1.47525 * 119.99809 * 179.97438 * 10 9 7 13 13 C 1.39773 * 120.06718 * 180.02562 * 12 10 9 14 14 C 1.37633 * 119.93025 * 179.97438 * 13 12 10 15 15 C 1.50697 * 119.96575 * 180.02562 * 14 13 12 16 16 O 1.42905 * 109.46908 * 255.01763 * 15 14 13 17 17 Si 1.86299 * 109.47352 * 15.01688 * 15 14 13 18 18 C 1.39191 * 120.06635 * 0.02562 * 14 13 12 19 19 N 1.39055 * 119.93184 * 179.97438 * 18 14 13 20 20 C 1.46901 * 110.99854 * 240.00353 * 19 18 14 21 21 C 1.46898 * 110.99970 * 116.04517 * 19 18 14 22 22 C 1.39239 * 120.14251 * 0.25580 * 18 14 13 23 23 C 1.37593 * 120.06312 * 359.44832 * 22 18 14 24 24 C 1.53777 * 113.61446 * 272.49796 * 4 3 2 25 25 H 1.09003 * 109.47319 * 299.99859 * 1 2 3 26 26 H 1.08999 * 109.47368 * 59.99457 * 1 2 3 27 27 H 1.09004 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47142 * 60.00783 * 3 2 1 29 29 H 1.08995 * 109.47367 * 300.00071 * 3 2 1 30 30 H 1.08998 * 113.61702 * 25.43261 * 6 4 3 31 31 H 1.09004 * 113.61474 * 254.52953 * 6 4 3 32 32 H 0.97000 * 119.99611 * 24.99790 * 9 7 6 33 33 H 1.07999 * 120.03740 * 359.95644 * 13 12 10 34 34 H 1.09003 * 109.47243 * 135.01424 * 15 14 13 35 35 H 0.96696 * 113.99921 * 299.99835 * 16 15 14 36 36 H 1.48499 * 110.00070 * 298.68484 * 17 15 14 37 37 H 1.48500 * 109.99905 * 59.99850 * 17 15 14 38 38 H 1.09002 * 109.47401 * 59.99571 * 20 19 18 39 39 H 1.09001 * 109.46874 * 299.99584 * 20 19 18 40 40 H 1.09004 * 109.46970 * 179.97438 * 20 19 18 41 41 H 1.09006 * 109.46770 * 179.97438 * 21 19 18 42 42 H 1.09001 * 109.47456 * 300.00115 * 21 19 18 43 43 H 1.09000 * 109.46814 * 60.00421 * 21 19 18 44 44 H 1.08002 * 119.96976 * 179.72444 * 22 18 14 45 45 H 1.08003 * 120.02921 * 180.27185 * 23 22 18 46 46 H 1.09000 * 113.61829 * 105.47283 * 24 4 3 47 47 H 1.09001 * 113.61561 * 334.57190 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8998 0.4287 -0.6962 6 6 4.2603 2.5353 -0.1235 7 6 5.2679 1.9991 0.9071 8 1 6.1076 1.4667 0.4606 9 7 5.6873 2.9986 1.8928 10 6 6.8766 2.8743 2.5144 11 8 7.6018 1.9329 2.2568 12 6 7.2991 3.8810 3.5065 13 6 8.5325 3.7538 4.1516 14 6 8.9241 4.6949 5.0764 15 6 10.2540 4.5588 5.7720 16 8 10.0462 4.1154 7.1145 17 14 11.3058 3.3178 4.8639 18 6 8.0931 5.7723 5.3697 19 7 8.4913 6.7212 6.3049 20 6 7.5403 6.7904 7.4224 21 6 8.6635 8.0384 5.6777 22 6 6.8612 5.8987 4.7331 23 6 6.4668 4.9644 3.8032 24 6 4.1452 1.0745 1.4067 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.6738 3.3801 0.2378 31 1 4.6940 2.7102 -1.1081 32 1 5.1088 3.7498 2.0980 33 1 9.1775 2.9177 3.9249 34 1 10.7592 5.5247 5.7823 35 1 9.5055 4.7144 7.6472 36 1 10.6429 1.9890 4.8701 37 1 11.5292 3.7674 3.4663 38 1 7.4845 5.8185 7.9127 39 1 6.5552 7.0640 7.0446 40 1 7.8760 7.5399 8.1392 41 1 8.9747 8.7618 6.4315 42 1 9.4242 7.9738 4.8997 43 1 7.7190 8.3571 5.2368 44 1 6.2167 6.7334 4.9661 45 1 5.5131 5.0654 3.3065 46 1 4.4861 0.0700 1.6576 47 1 3.5273 1.5198 2.1865 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12906260_13422196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:44 Heat of formation + Delta-G solvation = -44.280355 kcal Electronic energy + Delta-G solvation = -27204.118627 eV Core-core repulsion = 23354.822715 eV Total energy + Delta-G solvation = -3849.295912 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83737 -40.99946 -39.71668 -38.26016 -37.66985 -37.24293 -34.79381 -32.78556 -31.44649 -29.68686 -28.79790 -27.14763 -26.93495 -26.77476 -26.12059 -23.96318 -23.09832 -22.64176 -21.33992 -20.65189 -19.06380 -18.15084 -17.83887 -17.67478 -17.35536 -16.95540 -16.79897 -16.41199 -16.20284 -16.01749 -15.83363 -15.75304 -15.52469 -15.06115 -14.95870 -14.64875 -14.14139 -14.07026 -13.76661 -13.64177 -13.61899 -13.32715 -13.22432 -13.13252 -12.99256 -12.87990 -12.74766 -12.46811 -12.13609 -12.00372 -11.76456 -11.46923 -11.29455 -11.04995 -10.82992 -10.64700 -10.18450 -10.13811 -9.86531 -9.77238 -4.72093 -0.44551 0.07444 1.49311 1.65148 1.79885 2.01048 2.13051 2.57023 2.59806 2.71892 3.33368 3.45772 3.48547 3.55971 3.63168 3.73664 3.79974 3.85414 3.94914 4.05409 4.10645 4.14228 4.21163 4.26597 4.30890 4.34164 4.35884 4.39106 4.44127 4.47233 4.53805 4.55922 4.63910 4.65469 4.72181 4.73537 4.73678 4.77697 4.92451 4.95232 5.00320 5.05126 5.15093 5.19133 5.42063 5.49458 5.56393 6.07227 6.15299 6.38500 6.69598 7.12626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.072 3.928 4 C -0.106 4.106 5 H 0.105 0.895 6 C -0.138 4.138 7 C 0.122 3.878 8 H 0.120 0.880 9 N -0.715 5.715 10 C 0.560 3.440 11 O -0.531 6.531 12 C -0.133 4.133 13 C -0.055 4.055 14 C -0.097 4.097 15 C -0.066 4.066 16 O -0.533 6.533 17 Si 0.734 3.266 18 C 0.126 3.874 19 N -0.516 5.516 20 C 0.022 3.978 21 C 0.026 3.974 22 C -0.153 4.153 23 C -0.072 4.072 24 C -0.144 4.144 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.400 0.600 33 H 0.140 0.860 34 H 0.081 0.919 35 H 0.365 0.635 36 H -0.249 1.249 37 H -0.249 1.249 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.034 0.966 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.077 0.923 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 6.374 0.758 7.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.004 4.004 4 C -0.125 4.125 5 H 0.124 0.876 6 C -0.176 4.176 7 C 0.017 3.983 8 H 0.138 0.862 9 N -0.367 5.367 10 C 0.347 3.653 11 O -0.408 6.408 12 C -0.136 4.136 13 C -0.074 4.074 14 C -0.098 4.098 15 C -0.175 4.175 16 O -0.338 6.338 17 Si 0.633 3.367 18 C 0.032 3.968 19 N -0.237 5.237 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.173 4.173 23 C -0.091 4.091 24 C -0.182 4.182 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.236 0.764 33 H 0.158 0.842 34 H 0.099 0.901 35 H 0.213 0.787 36 H -0.173 1.173 37 H -0.173 1.173 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.096 0.904 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.898 4.364 -0.099 4.760 hybrid contribution -3.010 1.998 -0.099 3.614 sum -4.908 6.362 -0.198 8.038 Atomic orbital electron populations 1.22765 0.80788 1.03057 0.99992 1.87902 1.19841 1.27732 1.95394 1.22510 0.92774 0.84967 1.00180 1.22334 0.93154 0.98332 0.98701 0.87644 1.23368 0.97020 0.97136 1.00072 1.22573 0.96464 0.90074 0.89175 0.86222 1.45882 1.19716 1.28507 1.42554 1.18195 0.81258 0.85108 0.80690 1.90818 1.53290 1.32625 1.64061 1.19903 0.96477 0.96955 1.00277 1.21123 0.94963 0.97661 0.93631 1.20284 0.97701 0.93961 0.97854 1.25130 0.96352 1.08792 0.87229 1.86720 1.74986 1.51136 1.20969 0.93347 0.88178 0.77552 0.77622 1.18821 0.92117 0.92768 0.93105 1.59460 1.48073 1.06941 1.09193 1.22558 0.93438 1.03511 0.92889 1.22500 1.01112 0.88427 0.99978 1.21600 0.97282 1.00276 0.98112 1.21143 0.98622 0.92905 0.96444 1.23533 0.97037 1.01025 0.96643 0.94056 0.93992 0.89412 0.93198 0.93021 0.89373 0.89959 0.76440 0.84241 0.90089 0.78715 1.17347 1.17318 0.90732 0.94639 0.90071 0.90160 0.90856 0.94721 0.85120 0.85308 0.90393 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 101.05 1.11 1.10 16 2 O -0.39 -0.81 10.70 -35.23 -0.38 -1.19 16 3 C 0.07 -0.02 5.78 37.16 0.21 0.19 16 4 C -0.11 0.07 4.01 -89.80 -0.36 -0.30 16 5 H 0.11 0.00 8.14 -51.93 -0.42 -0.42 16 6 C -0.14 0.27 7.39 -25.92 -0.19 0.08 16 7 C 0.12 0.03 4.24 -67.11 -0.28 -0.26 16 8 H 0.12 0.24 7.46 -51.93 -0.39 -0.15 16 9 N -0.72 -0.17 5.30 -54.05 -0.29 -0.45 16 10 C 0.56 2.08 7.76 -12.48 -0.10 1.98 16 11 O -0.53 -4.09 15.94 5.28 0.08 -4.01 16 12 C -0.13 -0.34 5.88 -104.95 -0.62 -0.96 16 13 C -0.05 -0.21 8.19 -39.23 -0.32 -0.53 16 14 C -0.10 -0.23 5.28 -104.49 -0.55 -0.78 16 15 C -0.07 -0.11 2.29 36.00 0.08 -0.03 16 16 O -0.53 -1.24 12.65 -35.23 -0.45 -1.68 16 17 Si 0.73 1.24 30.40 -169.99 -5.17 -3.93 16 18 C 0.13 0.09 4.66 -83.86 -0.39 -0.31 16 19 N -0.52 0.45 3.67 -186.86 -0.69 -0.24 16 20 C 0.02 -0.05 9.20 60.07 0.55 0.50 16 21 C 0.03 -0.05 9.38 60.06 0.56 0.51 16 22 C -0.15 0.07 8.53 -39.44 -0.34 -0.27 16 23 C -0.07 0.03 9.53 -39.23 -0.37 -0.35 16 24 C -0.14 -0.02 7.43 -25.92 -0.19 -0.22 16 25 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 26 H 0.04 -0.05 8.14 -51.93 -0.42 -0.48 16 27 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.05 -0.06 7.84 -51.93 -0.41 -0.47 16 29 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.09 -0.30 8.08 -51.93 -0.42 -0.72 16 31 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 32 H 0.40 -1.07 6.75 -40.82 -0.28 -1.35 16 33 H 0.14 0.75 4.50 -52.49 -0.24 0.51 16 34 H 0.08 0.05 7.78 -51.93 -0.40 -0.35 16 35 H 0.36 0.12 8.06 45.56 0.37 0.48 16 36 H -0.25 -1.22 6.81 56.52 0.38 -0.83 16 37 H -0.25 -0.82 7.11 56.52 0.40 -0.42 16 38 H 0.07 -0.16 7.84 -51.93 -0.41 -0.57 16 39 H 0.04 -0.09 7.08 -51.93 -0.37 -0.46 16 40 H 0.08 -0.27 8.12 -51.93 -0.42 -0.69 16 41 H 0.08 -0.24 8.12 -51.93 -0.42 -0.66 16 42 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 43 H 0.03 -0.08 7.33 -51.93 -0.38 -0.46 16 44 H 0.13 -0.30 6.99 -52.49 -0.37 -0.66 16 45 H 0.13 -0.44 6.39 -52.48 -0.34 -0.78 16 46 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 47 H 0.08 -0.03 7.90 -51.93 -0.41 -0.44 16 LS Contribution 378.51 15.07 5.70 5.70 Total: 0.00 -7.41 378.51 -9.84 -17.25 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -7.47 Total: -11.82 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.19 Total: 0.37 kcal Atomic # 7 Polarization: 0.28 SS G_CDS: -0.97 Total: -0.69 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.74 Total: -6.88 kcal Atomic # 14 Polarization: 1.24 SS G_CDS: -5.17 Total: -3.93 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -7.41 -9.84 -17.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13422196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.034 kcal (2) G-P(sol) polarization free energy of solvation -7.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds