Wall clock time and date at job start Sat Mar 6 2021 20:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 113.99933 * 2 1 4 4 C 1.53008 * 109.46743 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.85225 * 43.80821 * 4 3 2 6 6 C 1.53783 * 113.60949 * 175.00159 * 4 3 2 7 7 C 1.53784 * 87.08058 * 139.98367 * 6 4 3 8 8 H 1.08997 * 113.61450 * 89.19561 * 7 6 4 9 9 N 1.46503 * 113.61294 * 220.01982 * 7 6 4 10 10 C 1.34772 * 119.99712 * 204.99519 * 9 7 6 11 11 O 1.21592 * 120.00559 * 0.02562 * 10 9 7 12 12 C 1.47525 * 119.99809 * 179.97438 * 10 9 7 13 13 C 1.39773 * 120.06718 * 180.02562 * 12 10 9 14 14 C 1.37633 * 119.93025 * 179.97438 * 13 12 10 15 15 C 1.50697 * 119.96575 * 180.02562 * 14 13 12 16 16 O 1.42905 * 109.46908 * 255.01763 * 15 14 13 17 17 Si 1.86299 * 109.47352 * 15.01688 * 15 14 13 18 18 C 1.39191 * 120.06635 * 0.02562 * 14 13 12 19 19 N 1.39055 * 119.93184 * 179.97438 * 18 14 13 20 20 C 1.46901 * 110.99854 * 240.00353 * 19 18 14 21 21 C 1.46898 * 110.99970 * 116.04517 * 19 18 14 22 22 C 1.39239 * 120.14251 * 0.25580 * 18 14 13 23 23 C 1.37593 * 120.06312 * 359.44832 * 22 18 14 24 24 C 1.53777 * 113.61446 * 272.49796 * 4 3 2 25 25 H 1.09003 * 109.47319 * 299.99859 * 1 2 3 26 26 H 1.08999 * 109.47368 * 59.99457 * 1 2 3 27 27 H 1.09004 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47142 * 60.00783 * 3 2 1 29 29 H 1.08995 * 109.47367 * 300.00071 * 3 2 1 30 30 H 1.08998 * 113.61702 * 25.43261 * 6 4 3 31 31 H 1.09004 * 113.61474 * 254.52953 * 6 4 3 32 32 H 0.97000 * 119.99611 * 24.99790 * 9 7 6 33 33 H 1.07999 * 120.03740 * 359.95644 * 13 12 10 34 34 H 1.09003 * 109.47243 * 135.01424 * 15 14 13 35 35 H 0.96696 * 113.99921 * 299.99835 * 16 15 14 36 36 H 1.48499 * 110.00070 * 298.68484 * 17 15 14 37 37 H 1.48500 * 109.99905 * 59.99850 * 17 15 14 38 38 H 1.09002 * 109.47401 * 59.99571 * 20 19 18 39 39 H 1.09001 * 109.46874 * 299.99584 * 20 19 18 40 40 H 1.09004 * 109.46970 * 179.97438 * 20 19 18 41 41 H 1.09006 * 109.46770 * 179.97438 * 21 19 18 42 42 H 1.09001 * 109.47456 * 300.00115 * 21 19 18 43 43 H 1.09000 * 109.46814 * 60.00421 * 21 19 18 44 44 H 1.08002 * 119.96976 * 179.72444 * 22 18 14 45 45 H 1.08003 * 120.02921 * 180.27185 * 23 22 18 46 46 H 1.09000 * 113.61829 * 105.47283 * 24 4 3 47 47 H 1.09001 * 113.61561 * 334.57190 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8998 0.4287 -0.6962 6 6 4.2603 2.5353 -0.1235 7 6 5.2679 1.9991 0.9071 8 1 6.1076 1.4667 0.4606 9 7 5.6873 2.9986 1.8928 10 6 6.8766 2.8743 2.5144 11 8 7.6018 1.9329 2.2568 12 6 7.2991 3.8810 3.5065 13 6 8.5325 3.7538 4.1516 14 6 8.9241 4.6949 5.0764 15 6 10.2540 4.5588 5.7720 16 8 10.0462 4.1154 7.1145 17 14 11.3058 3.3178 4.8639 18 6 8.0931 5.7723 5.3697 19 7 8.4913 6.7212 6.3049 20 6 7.5403 6.7904 7.4224 21 6 8.6635 8.0384 5.6777 22 6 6.8612 5.8987 4.7331 23 6 6.4668 4.9644 3.8032 24 6 4.1452 1.0745 1.4067 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8899 30 1 3.6738 3.3801 0.2378 31 1 4.6940 2.7102 -1.1081 32 1 5.1088 3.7498 2.0980 33 1 9.1775 2.9177 3.9249 34 1 10.7592 5.5247 5.7823 35 1 9.5055 4.7144 7.6472 36 1 10.6429 1.9890 4.8701 37 1 11.5292 3.7674 3.4663 38 1 7.4845 5.8185 7.9127 39 1 6.5552 7.0640 7.0446 40 1 7.8760 7.5399 8.1392 41 1 8.9747 8.7618 6.4315 42 1 9.4242 7.9738 4.8997 43 1 7.7190 8.3571 5.2368 44 1 6.2167 6.7334 4.9661 45 1 5.5131 5.0654 3.3065 46 1 4.4861 0.0700 1.6576 47 1 3.5273 1.5198 2.1865 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_13422196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:42 Heat of formation + Delta-G solvation = -43.798207 kcal Electronic energy + Delta-G solvation = -27204.097720 eV Core-core repulsion = 23354.822715 eV Total energy + Delta-G solvation = -3849.275004 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.94128 -41.04384 -39.82982 -38.28616 -37.71968 -37.36628 -34.97247 -32.86917 -31.48836 -29.66347 -28.58190 -27.12631 -26.97731 -26.76180 -26.14143 -23.96516 -23.17188 -22.67851 -21.45865 -20.67404 -19.16177 -18.23866 -17.92275 -17.71295 -17.37111 -16.95026 -16.80324 -16.44647 -16.32189 -16.02483 -15.95174 -15.84338 -15.57290 -15.09372 -15.03625 -14.67118 -14.16666 -14.08844 -13.90758 -13.57719 -13.52461 -13.31858 -13.15137 -13.12285 -12.99078 -12.75516 -12.66570 -12.47440 -12.37372 -12.13758 -11.73232 -11.48702 -11.44887 -11.28827 -11.01102 -10.62665 -10.32521 -10.24366 -9.90113 -9.64779 -4.94379 -0.55072 -0.00346 1.29571 1.47103 1.56494 1.88915 1.92128 2.46886 2.66898 2.77723 3.34374 3.42675 3.47629 3.54252 3.55941 3.72455 3.82683 3.84006 3.96372 4.03325 4.09996 4.25803 4.33654 4.35824 4.37545 4.41170 4.45044 4.48637 4.55916 4.56665 4.59281 4.63367 4.65100 4.72848 4.75111 4.82727 4.88539 4.92617 4.97401 4.98234 4.98604 4.99907 5.09770 5.14184 5.38349 5.45777 5.75497 6.13552 6.21252 6.31041 6.65271 6.96743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.070 3.930 4 C -0.105 4.105 5 H 0.092 0.908 6 C -0.117 4.117 7 C 0.113 3.887 8 H 0.094 0.906 9 N -0.695 5.695 10 C 0.554 3.446 11 O -0.586 6.586 12 C -0.150 4.150 13 C -0.083 4.083 14 C -0.113 4.113 15 C -0.062 4.062 16 O -0.544 6.544 17 Si 0.795 3.205 18 C 0.133 3.867 19 N -0.523 5.523 20 C 0.022 3.978 21 C 0.025 3.975 22 C -0.148 4.148 23 C -0.056 4.056 24 C -0.143 4.143 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.417 0.583 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.375 0.625 36 H -0.304 1.304 37 H -0.274 1.274 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.160 0.840 45 H 0.166 0.834 46 H 0.054 0.946 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 9.461 1.317 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.006 4.006 4 C -0.124 4.124 5 H 0.111 0.889 6 C -0.155 4.155 7 C 0.008 3.992 8 H 0.112 0.888 9 N -0.346 5.346 10 C 0.343 3.657 11 O -0.468 6.468 12 C -0.153 4.153 13 C -0.102 4.102 14 C -0.114 4.114 15 C -0.172 4.172 16 O -0.351 6.351 17 Si 0.700 3.300 18 C 0.038 3.962 19 N -0.245 5.245 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.168 4.168 23 C -0.075 4.075 24 C -0.182 4.182 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.257 0.743 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.224 0.776 36 H -0.232 1.232 37 H -0.201 1.201 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.177 0.823 45 H 0.183 0.817 46 H 0.073 0.927 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.042 7.501 0.470 8.534 hybrid contribution -2.417 1.005 -0.280 2.633 sum -6.459 8.506 0.190 10.682 Atomic orbital electron populations 1.22885 0.79736 1.03545 1.00873 1.87864 1.21199 1.29308 1.95610 1.22625 0.92308 0.84330 1.01341 1.22284 0.93551 0.98984 0.97605 0.88922 1.23302 0.95623 0.97045 0.99515 1.22576 0.96073 0.90554 0.90010 0.88829 1.45739 1.18699 1.28715 1.41472 1.18520 0.81668 0.84695 0.80807 1.90788 1.55101 1.34907 1.65959 1.19899 0.96779 0.98035 1.00590 1.21066 0.95843 0.97775 0.95495 1.20332 0.98394 0.94650 0.98059 1.25026 0.96262 1.08965 0.86961 1.86683 1.75313 1.51851 1.21217 0.92872 0.86866 0.74214 0.76036 1.18936 0.92073 0.92215 0.92930 1.59447 1.48733 1.07144 1.09186 1.22614 0.93545 1.03748 0.92509 1.22549 1.01402 0.87916 1.00202 1.21930 0.96967 1.00693 0.97161 1.21479 0.99133 0.91136 0.95800 1.23539 0.97163 0.99840 0.97659 0.93153 0.93065 0.89275 0.91903 0.91823 0.86736 0.89346 0.74343 0.87254 0.88474 0.77601 1.23216 1.20094 0.91169 0.93798 0.88868 0.88974 0.91632 0.93805 0.82253 0.81653 0.92681 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.76 10.70 -148.98 -1.59 -3.35 16 3 C 0.07 -0.11 5.78 71.98 0.42 0.30 16 4 C -0.11 0.12 4.01 -10.27 -0.04 0.08 16 5 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 6 C -0.12 0.59 7.39 31.12 0.23 0.82 16 7 C 0.11 0.15 4.24 45.52 0.19 0.35 16 8 H 0.09 0.65 7.46 -2.39 -0.02 0.64 16 9 N -0.69 -0.40 5.30 -443.19 -2.35 -2.75 16 10 C 0.55 5.20 7.76 86.69 0.67 5.88 16 11 O -0.59 -11.47 15.94 -4.01 -0.06 -11.53 16 12 C -0.15 -0.93 5.88 -20.08 -0.12 -1.05 16 13 C -0.08 -0.86 8.19 22.50 0.18 -0.67 16 14 C -0.11 -0.65 5.28 -19.78 -0.10 -0.76 16 15 C -0.06 -0.28 2.29 71.24 0.16 -0.11 16 16 O -0.54 -2.89 12.65 -148.98 -1.89 -4.78 16 17 Si 0.79 5.07 30.40 68.60 2.09 7.15 16 18 C 0.13 0.04 4.66 38.47 0.18 0.22 16 19 N -0.52 1.78 3.67 -745.08 -2.73 -0.95 16 20 C 0.02 -0.15 9.20 127.69 1.17 1.03 16 21 C 0.03 -0.15 9.38 127.69 1.20 1.05 16 22 C -0.15 0.48 8.53 22.36 0.19 0.68 16 23 C -0.06 0.14 9.53 22.50 0.21 0.35 16 24 C -0.14 -0.17 7.43 31.12 0.23 0.06 16 25 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.09 -0.20 8.14 -2.38 -0.02 -0.22 16 28 H 0.06 -0.27 7.84 -2.39 -0.02 -0.29 16 29 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.11 -1.14 8.08 -2.39 -0.02 -1.16 16 31 H 0.09 -0.48 8.14 -2.38 -0.02 -0.50 16 32 H 0.42 -3.05 6.75 -92.71 -0.63 -3.68 16 33 H 0.11 1.72 4.50 -2.91 -0.01 1.71 16 34 H 0.10 0.11 7.78 -2.39 -0.02 0.09 16 35 H 0.37 0.20 8.06 -74.06 -0.60 -0.40 16 36 H -0.30 -4.65 6.81 99.48 0.68 -3.97 16 37 H -0.27 -2.77 7.11 99.48 0.71 -2.07 16 38 H 0.07 -0.40 7.84 -2.39 -0.02 -0.42 16 39 H 0.04 -0.36 7.08 -2.39 -0.02 -0.37 16 40 H 0.09 -0.83 8.12 -2.38 -0.02 -0.85 16 41 H 0.09 -0.75 8.12 -2.38 -0.02 -0.77 16 42 H 0.06 -0.28 8.14 -2.39 -0.02 -0.29 16 43 H 0.04 -0.33 7.33 -2.39 -0.02 -0.35 16 44 H 0.16 -1.39 6.99 -2.91 -0.02 -1.41 16 45 H 0.17 -1.74 6.39 -2.91 -0.02 -1.76 16 46 H 0.05 0.31 8.14 -2.39 -0.02 0.30 16 47 H 0.10 -0.12 7.90 -2.39 -0.02 -0.14 16 Total: 0.00 -22.50 378.51 -0.74 -23.24 By element: Atomic # 1 Polarization: -16.23 SS G_CDS: -0.23 Total: -16.46 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.03 Total: 9.43 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -5.08 Total: -3.70 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -3.54 Total: -19.66 kcal Atomic # 14 Polarization: 5.07 SS G_CDS: 2.09 Total: 7.15 kcal Total: -22.50 -0.74 -23.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13422196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.558 kcal (2) G-P(sol) polarization free energy of solvation -22.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds