Wall clock time and date at job start Sat Mar 6 2021 20:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00080 * 2 1 4 4 C 1.52995 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.91108 * 316.25559 * 4 3 2 6 6 C 1.53784 * 113.61472 * 87.50209 * 4 3 2 7 7 C 1.53781 * 87.07982 * 139.98163 * 6 4 3 8 8 H 1.08994 * 113.69257 * 89.13516 * 7 6 4 9 9 N 1.46506 * 113.61087 * 220.02323 * 7 6 4 10 10 C 1.34783 * 119.99531 * 252.49537 * 9 7 6 11 11 O 1.21692 * 120.00161 * 0.02562 * 10 9 7 12 12 C 1.46678 * 119.99704 * 180.02562 * 10 9 7 13 13 C 1.37870 * 126.23328 * 179.97438 * 12 10 9 14 14 C 1.50696 * 126.45722 * 0.02562 * 13 12 10 15 15 C 1.39838 * 107.08469 * 180.02562 * 13 12 10 16 16 C 1.35447 * 107.86646 * 0.02562 * 15 13 12 17 17 C 1.50700 * 125.56708 * 180.02562 * 16 15 13 18 18 O 1.42899 * 109.47483 * 119.97538 * 17 16 15 19 19 Si 1.86303 * 109.46973 * 359.97438 * 17 16 15 20 20 N 1.35537 * 108.87313 * 0.02562 * 16 15 13 21 21 C 1.53782 * 113.61550 * 185.00164 * 4 3 2 22 22 H 1.08992 * 109.47491 * 59.99477 * 1 2 3 23 23 H 1.08999 * 109.47529 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46685 * 299.99516 * 1 2 3 25 25 H 1.08995 * 109.46678 * 60.00443 * 3 2 1 26 26 H 1.08997 * 109.46742 * 300.00235 * 3 2 1 27 27 H 1.09005 * 113.61095 * 25.43261 * 6 4 3 28 28 H 1.08998 * 113.61718 * 254.53001 * 6 4 3 29 29 H 0.96997 * 120.00100 * 72.49956 * 9 7 6 30 30 H 1.09009 * 109.46770 * 89.99550 * 14 13 12 31 31 H 1.09000 * 109.47361 * 209.99744 * 14 13 12 32 32 H 1.08996 * 109.47260 * 330.00292 * 14 13 12 33 33 H 1.07996 * 126.06666 * 179.97438 * 15 13 12 34 34 H 1.08999 * 109.47416 * 239.97889 * 17 16 15 35 35 H 0.96703 * 114.00042 * 300.00511 * 18 17 16 36 36 H 1.48503 * 109.99909 * 58.67832 * 19 17 16 37 37 H 1.48492 * 110.00210 * 180.02562 * 19 17 16 38 38 H 0.97000 * 125.67610 * 180.26654 * 20 16 15 39 39 H 1.08996 * 113.61416 * 105.47397 * 21 4 3 40 40 H 1.09005 * 113.60931 * 334.56757 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9014 0.4279 0.6933 6 6 4.1441 1.0750 -1.4086 7 6 5.2672 1.9994 -0.9095 8 1 6.1073 1.4668 -0.4641 9 7 5.6857 2.9993 -1.8952 10 6 6.8746 2.8752 -2.5178 11 8 7.6002 1.9325 -2.2617 12 6 7.2939 3.8766 -3.5042 13 6 8.4762 3.8767 -4.2133 14 6 9.5761 2.8507 -4.1207 15 6 8.4625 5.0083 -5.0348 16 6 7.2981 5.6653 -4.8176 17 6 6.8714 6.9408 -5.4974 18 8 5.6528 6.7166 -6.2091 19 14 8.1965 7.4823 -6.6898 20 7 6.5794 4.9885 -3.8890 21 6 4.2605 2.5352 0.1222 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8463 -0.8900 27 1 3.5255 1.5207 -2.1876 28 1 4.4847 0.0706 -1.6601 29 1 5.1072 3.7506 -2.0996 30 1 9.3937 2.0562 -4.8444 31 1 10.5340 3.3246 -4.3349 32 1 9.5959 2.4291 -3.1157 33 1 9.2422 5.3059 -5.7201 34 1 6.7172 7.7177 -4.7485 35 1 5.7163 6.0361 -6.8933 36 1 8.4388 6.4184 -7.6971 37 1 7.7881 8.7395 -7.3663 38 1 5.7048 5.2425 -3.5550 39 1 4.6951 2.7096 1.1064 40 1 3.6736 3.3801 -0.2384 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:53 Heat of formation + Delta-G solvation = -48.850991 kcal Electronic energy + Delta-G solvation = -21891.821687 eV Core-core repulsion = 18481.628956 eV Total energy + Delta-G solvation = -3410.192731 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.62054 -41.03887 -39.58462 -38.23869 -37.83413 -34.94663 -33.44900 -31.71025 -29.71911 -28.20347 -27.29155 -26.82156 -26.45574 -23.87421 -22.21325 -21.52492 -21.17110 -20.20618 -19.46440 -18.15151 -17.73210 -17.22587 -16.87509 -16.72235 -16.49022 -16.13366 -15.85307 -15.67282 -15.40214 -15.00593 -14.73412 -14.31417 -13.97749 -13.89213 -13.63287 -13.57361 -13.51587 -13.25456 -13.02761 -12.95987 -12.45590 -12.27473 -12.10446 -11.86784 -11.70617 -11.45348 -11.13897 -10.82320 -10.62763 -10.21609 -9.83341 -9.20795 -4.83464 0.28471 1.22099 1.53115 1.69949 1.89153 2.00993 2.21490 2.22875 2.78413 3.33616 3.40143 3.55489 3.56118 3.74156 3.80921 3.85555 4.13173 4.22144 4.29159 4.34499 4.44919 4.49294 4.51087 4.56085 4.64283 4.71147 4.73272 4.76644 4.81142 4.82488 4.89214 4.95158 5.00735 5.14597 5.18041 5.34921 5.47251 5.62655 5.84538 6.20732 6.29819 6.38825 6.47051 7.05433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.070 3.930 4 C -0.105 4.105 5 H 0.095 0.905 6 C -0.143 4.143 7 C 0.119 3.881 8 H 0.100 0.900 9 N -0.708 5.708 10 C 0.587 3.413 11 O -0.563 6.563 12 C -0.070 4.070 13 C -0.086 4.086 14 C -0.091 4.091 15 C -0.207 4.207 16 C 0.037 3.963 17 C -0.062 4.062 18 O -0.548 6.548 19 Si 0.793 3.207 20 N -0.513 5.513 21 C -0.120 4.120 22 H 0.049 0.951 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.409 0.591 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.167 0.833 34 H 0.136 0.864 35 H 0.389 0.611 36 H -0.284 1.284 37 H -0.298 1.298 38 H 0.428 0.572 39 H 0.088 0.912 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 5.291 0.773 5.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.007 4.007 4 C -0.124 4.124 5 H 0.113 0.887 6 C -0.182 4.182 7 C 0.015 3.985 8 H 0.118 0.882 9 N -0.358 5.358 10 C 0.376 3.624 11 O -0.442 6.442 12 C -0.184 4.184 13 C -0.095 4.095 14 C -0.148 4.148 15 C -0.232 4.232 16 C -0.082 4.082 17 C -0.171 4.171 18 O -0.356 6.356 19 Si 0.697 3.303 20 N -0.110 5.110 21 C -0.158 4.158 22 H 0.067 0.933 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.245 0.755 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.184 0.816 34 H 0.154 0.846 35 H 0.239 0.761 36 H -0.210 1.210 37 H -0.225 1.225 38 H 0.267 0.733 39 H 0.107 0.893 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.073 5.089 0.650 5.533 hybrid contribution -1.813 -0.397 -0.396 1.898 sum -3.886 4.692 0.254 6.097 Atomic orbital electron populations 1.22885 0.79784 1.03574 1.00808 1.87864 1.21146 1.29240 1.95594 1.22623 0.92570 0.84328 1.01137 1.22293 0.93315 0.99016 0.97804 0.88668 1.23526 0.97278 1.00046 0.97373 1.22516 0.96069 0.90264 0.89686 0.88160 1.45758 1.19066 1.28691 1.42299 1.17279 0.81404 0.83957 0.79800 1.90816 1.54456 1.33448 1.65503 1.20141 0.97047 0.94015 1.07158 1.20177 0.94673 0.97700 0.96941 1.20341 0.95733 0.96246 1.02477 1.20828 0.99364 0.97099 1.05863 1.21220 0.93794 0.97586 0.95600 1.25067 0.95791 0.94544 1.01648 1.86574 1.32705 1.62733 1.53601 0.93290 0.82530 0.76595 0.77934 1.41796 1.18076 1.18930 1.32227 1.23303 0.95872 0.96889 0.99736 0.93279 0.89180 0.93093 0.91943 0.92237 0.89070 0.92354 0.75504 0.91781 0.89881 0.92037 0.81603 0.84598 0.76104 1.21000 1.22534 0.73268 0.89292 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.71 10.70 -148.98 -1.59 -3.30 16 3 C 0.07 -0.10 5.78 71.98 0.42 0.31 16 4 C -0.11 0.17 4.01 -10.27 -0.04 0.13 16 5 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 6 C -0.14 -0.04 7.43 31.12 0.23 0.19 16 7 C 0.12 -0.01 4.24 45.52 0.19 0.18 16 8 H 0.10 0.45 7.46 -2.39 -0.02 0.44 16 9 N -0.71 0.54 5.35 -443.98 -2.38 -1.83 16 10 C 0.59 3.77 7.79 86.45 0.67 4.45 16 11 O -0.56 -8.06 14.40 -4.32 -0.06 -8.12 16 12 C -0.07 -0.27 7.06 40.35 0.28 0.01 16 13 C -0.09 -0.42 6.21 -19.57 -0.12 -0.54 16 14 C -0.09 -0.47 9.83 71.23 0.70 0.23 16 15 C -0.21 -0.03 9.27 22.01 0.20 0.17 16 16 C 0.04 -0.08 6.47 41.34 0.27 0.19 16 17 C -0.06 0.31 3.08 71.24 0.22 0.53 16 18 O -0.55 1.29 12.88 -148.98 -1.92 -0.63 16 19 Si 0.79 -3.97 30.54 68.60 2.10 -1.87 16 20 N -0.51 1.18 5.99 -171.93 -1.03 0.15 16 21 C -0.12 0.65 7.39 31.12 0.23 0.88 16 22 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 23 H 0.09 -0.21 8.14 -2.39 -0.02 -0.22 16 24 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 25 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.06 -0.22 7.84 -2.39 -0.02 -0.24 16 27 H 0.09 -0.11 7.90 -2.38 -0.02 -0.13 16 28 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.41 -2.93 7.86 -92.71 -0.73 -3.65 16 30 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.06 0.58 6.48 -2.39 -0.02 0.56 16 33 H 0.17 -0.66 6.17 -2.91 -0.02 -0.68 16 34 H 0.14 -1.06 7.96 -2.39 -0.02 -1.08 16 35 H 0.39 -2.61 8.70 -74.06 -0.64 -3.25 16 36 H -0.28 0.02 7.11 99.48 0.71 0.72 16 37 H -0.30 -0.66 7.11 99.48 0.71 0.04 16 38 H 0.43 -3.26 8.19 -92.71 -0.76 -4.02 16 39 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.11 -1.01 8.08 -2.38 -0.02 -1.03 16 Total: 0.00 -19.33 333.56 -1.40 -20.73 By element: Atomic # 1 Polarization: -12.04 SS G_CDS: -1.02 Total: -13.06 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 4.50 Total: 7.94 kcal Atomic # 7 Polarization: 1.72 SS G_CDS: -3.41 Total: -1.69 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -3.58 Total: -12.05 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: 2.10 Total: -1.87 kcal Total: -19.33 -1.40 -20.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.116 kcal (2) G-P(sol) polarization free energy of solvation -19.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds