Wall clock time and date at job start Sat Mar 6 2021 20:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09000 * 112.84979 * 316.19744 * 4 3 2 6 6 C 1.53780 * 113.61521 * 87.50190 * 4 3 2 7 7 C 1.53788 * 87.07896 * 139.98142 * 6 4 3 8 8 H 1.08998 * 113.68803 * 89.13303 * 7 6 4 9 9 N 1.46494 * 113.61100 * 220.01812 * 7 6 4 10 10 C 1.34780 * 120.00379 * 252.49776 * 9 7 6 11 11 O 1.21285 * 119.99268 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00333 * 180.02562 * 10 9 7 13 13 C 1.53539 * 109.82539 * 278.20508 * 12 10 9 14 14 C 1.53032 * 108.56658 * 179.51030 * 13 12 10 15 15 C 1.50205 * 110.31367 * 49.57285 * 14 13 12 16 16 C 1.50703 * 118.54864 * 159.96921 * 15 14 13 17 17 O 1.42901 * 109.46809 * 69.97828 * 16 15 14 18 18 Si 1.86291 * 109.47567 * 189.97755 * 16 15 14 19 19 C 1.31115 * 122.91074 * 339.95228 * 15 14 13 20 20 N 1.38931 * 121.84443 * 0.39799 * 19 15 14 21 21 C 1.53782 * 113.61326 * 185.00273 * 4 3 2 22 22 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 24 24 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 25 25 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 26 26 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 27 27 H 1.09005 * 113.61518 * 254.52933 * 6 4 3 28 28 H 1.08994 * 113.61532 * 25.43252 * 6 4 3 29 29 H 0.97000 * 120.00121 * 72.49929 * 9 7 6 30 30 H 1.08995 * 109.81371 * 39.13904 * 12 10 9 31 31 H 1.09001 * 109.62162 * 299.24140 * 13 12 10 32 32 H 1.09004 * 109.61416 * 59.78971 * 13 12 10 33 33 H 1.08996 * 109.33325 * 289.31821 * 14 13 12 34 34 H 1.08997 * 109.19389 * 169.74063 * 14 13 12 35 35 H 1.09000 * 109.46980 * 309.98127 * 16 15 14 36 36 H 0.96700 * 114.00268 * 60.00677 * 17 16 15 37 37 H 1.48506 * 110.00088 * 58.68277 * 18 16 15 38 38 H 1.48500 * 110.00393 * 180.02562 * 18 16 15 39 39 H 1.08003 * 119.08020 * 180.38754 * 19 15 14 40 40 H 0.97003 * 120.55340 * 166.66591 * 20 19 15 41 41 H 1.08996 * 113.61296 * 334.55916 * 21 4 3 42 42 H 1.08994 * 113.61684 * 105.38466 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9004 0.4283 0.6943 6 6 4.1442 1.0749 -1.4086 7 6 5.2673 1.9994 -0.9094 8 1 6.1074 1.4667 -0.4639 9 7 5.6858 2.9991 -1.8950 10 6 6.8747 2.8751 -2.5177 11 8 7.5982 1.9359 -2.2616 12 6 7.3055 3.9038 -3.5311 13 6 6.6557 3.6012 -4.8889 14 6 7.1019 4.6680 -5.8912 15 6 8.5946 4.8300 -5.8503 16 6 9.2829 5.4640 -7.0317 17 8 8.9548 6.8538 -7.0846 18 14 11.1270 5.2676 -6.8550 19 6 9.3254 4.4446 -4.8322 20 7 8.7636 3.8456 -3.7117 21 6 4.2605 2.5352 0.1222 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 4.4848 0.0705 -1.6600 28 1 3.5257 1.5206 -2.1876 29 1 5.1074 3.7504 -2.0995 30 1 7.0143 4.8987 -3.1944 31 1 6.9729 2.6177 -5.2354 32 1 5.5705 3.6244 -4.7884 33 1 6.6290 5.6178 -5.6418 34 1 6.7991 4.3666 -6.8940 35 1 8.9519 4.9774 -7.9491 36 1 9.2208 7.3509 -6.2989 37 1 11.4783 3.8274 -6.7669 38 1 11.8174 5.8892 -8.0135 39 1 10.3942 4.5969 -4.8657 40 1 9.3238 3.3963 -3.0596 41 1 3.6738 3.3800 -0.2384 42 1 4.6938 2.7102 1.1069 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_15413834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:48:58 Heat of formation + Delta-G solvation = -70.182058 kcal Electronic energy + Delta-G solvation = -22396.651657 eV Core-core repulsion = 18958.222463 eV Total energy + Delta-G solvation = -3438.429194 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59022 -40.35422 -39.26983 -38.20733 -37.29280 -34.79753 -33.20191 -32.85703 -29.73824 -27.64778 -26.86553 -26.55548 -25.41711 -24.03120 -23.08404 -21.69181 -20.71199 -19.33298 -18.99530 -17.98234 -17.67833 -17.24228 -16.84924 -16.81224 -16.43462 -16.11214 -15.84843 -15.68670 -15.56221 -15.19745 -14.90117 -14.39750 -14.16100 -14.10979 -13.86748 -13.45243 -13.21055 -13.05347 -13.00630 -12.90346 -12.41417 -12.24950 -12.09058 -11.92154 -11.88091 -11.65925 -11.41422 -11.25875 -10.85489 -10.59438 -10.15525 -10.09854 -8.45123 -5.00850 1.34286 1.40242 1.46029 1.63970 1.91948 2.00721 2.64011 2.82584 3.44066 3.54546 3.60621 3.70402 3.78897 3.83737 3.89721 3.90733 4.03566 4.30102 4.33204 4.38535 4.45501 4.48256 4.53448 4.59681 4.62344 4.65231 4.71250 4.74818 4.78517 4.81765 4.84892 4.99479 5.00942 5.05961 5.22454 5.24190 5.30076 5.53491 5.57917 6.23717 6.25970 6.47410 6.82248 6.96334 7.11889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.069 3.931 4 C -0.108 4.108 5 H 0.091 0.909 6 C -0.144 4.144 7 C 0.119 3.881 8 H 0.095 0.905 9 N -0.699 5.699 10 C 0.512 3.488 11 O -0.577 6.577 12 C 0.140 3.860 13 C -0.123 4.123 14 C -0.051 4.051 15 C -0.291 4.291 16 C -0.045 4.045 17 O -0.563 6.563 18 Si 0.756 3.244 19 C 0.146 3.854 20 N -0.738 5.738 21 C -0.118 4.118 22 H 0.088 0.912 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.420 0.580 30 H 0.119 0.881 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.392 0.608 37 H -0.297 1.297 38 H -0.307 1.307 39 H 0.148 0.852 40 H 0.407 0.593 41 H 0.112 0.888 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 5.313 4.352 8.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.007 4.007 4 C -0.127 4.127 5 H 0.109 0.891 6 C -0.182 4.182 7 C 0.013 3.987 8 H 0.113 0.887 9 N -0.351 5.351 10 C 0.298 3.702 11 O -0.456 6.456 12 C 0.031 3.969 13 C -0.161 4.161 14 C -0.088 4.088 15 C -0.302 4.302 16 C -0.156 4.156 17 O -0.371 6.371 18 Si 0.665 3.335 19 C 0.025 3.975 20 N -0.370 5.370 21 C -0.156 4.156 22 H 0.107 0.893 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.258 0.742 30 H 0.136 0.864 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.242 0.758 37 H -0.225 1.225 38 H -0.236 1.236 39 H 0.165 0.835 40 H 0.244 0.756 41 H 0.131 0.869 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.538 4.020 3.646 6.478 hybrid contribution -0.561 -0.414 -0.339 0.775 sum -4.099 3.606 3.307 6.383 Atomic orbital electron populations 1.22883 0.79794 1.03511 1.00850 1.87862 1.21146 1.29405 1.95607 1.22643 0.92580 0.84249 1.01235 1.22307 0.93351 0.99182 0.97905 0.89094 1.23529 0.97416 0.99895 0.97388 1.22454 0.95834 0.90453 0.89920 0.88712 1.45813 1.19306 1.28641 1.41297 1.20972 0.81585 0.86253 0.81375 1.90726 1.54760 1.34628 1.65498 1.21118 0.83072 0.98298 0.94373 1.21842 1.01476 0.99406 0.93424 1.19934 0.91940 0.98386 0.98542 1.20980 0.97054 1.14844 0.97281 1.24736 1.09164 0.83645 0.98066 1.86434 1.85158 1.18950 1.46544 0.94393 0.74334 0.79204 0.85574 1.20490 0.96847 0.93802 0.86350 1.44410 1.05119 1.62008 1.25497 1.23289 0.95856 0.96817 0.99667 0.89303 0.93168 0.93117 0.91958 0.92033 0.92798 0.88569 0.74223 0.86371 0.93091 0.88192 0.90182 0.91899 0.89221 0.75826 1.22489 1.23572 0.83538 0.75623 0.86936 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.41 10.70 -148.98 -1.59 -3.00 16 3 C 0.07 -0.18 5.78 71.98 0.42 0.24 16 4 C -0.11 0.31 4.01 -10.27 -0.04 0.27 16 5 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 6 C -0.14 0.22 7.43 31.12 0.23 0.45 16 7 C 0.12 -0.31 4.24 45.52 0.19 -0.11 16 8 H 0.09 0.25 7.46 -2.39 -0.02 0.23 16 9 N -0.70 3.53 5.35 -440.03 -2.36 1.17 16 10 C 0.51 0.43 7.08 87.66 0.62 1.05 16 11 O -0.58 -5.97 15.70 -3.05 -0.05 -6.02 16 12 C 0.14 -0.43 3.36 44.32 0.15 -0.28 16 13 C -0.12 0.30 5.47 30.79 0.17 0.47 16 14 C -0.05 0.07 5.85 29.70 0.17 0.24 16 15 C -0.29 0.07 5.37 -16.76 -0.09 -0.02 16 16 C -0.04 -0.04 2.81 71.24 0.20 0.16 16 17 O -0.56 -0.59 12.88 -148.98 -1.92 -2.51 16 18 Si 0.76 -0.08 29.72 68.60 2.04 1.96 16 19 C 0.15 -0.21 9.61 83.41 0.80 0.59 16 20 N -0.74 0.39 5.46 -329.01 -1.80 -1.41 16 21 C -0.12 0.87 7.39 31.12 0.23 1.10 16 22 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 23 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 24 H 0.05 -0.20 8.14 -2.38 -0.02 -0.22 16 25 H 0.06 -0.32 7.84 -2.39 -0.02 -0.34 16 26 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.05 0.16 8.14 -2.38 -0.02 0.14 16 28 H 0.10 -0.36 7.89 -2.39 -0.02 -0.37 16 29 H 0.42 -4.97 8.73 -92.71 -0.81 -5.78 16 30 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.09 0.31 7.96 -2.39 -0.02 0.30 16 36 H 0.39 -2.93 8.70 -74.06 -0.64 -3.57 16 37 H -0.30 -1.78 7.11 99.48 0.71 -1.08 16 38 H -0.31 -2.48 7.11 99.48 0.71 -1.77 16 39 H 0.15 -0.77 4.49 -2.91 -0.01 -0.78 16 40 H 0.41 0.20 8.12 -92.71 -0.75 -0.56 16 41 H 0.11 -1.31 8.08 -2.39 -0.02 -1.33 16 42 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 Total: 0.00 -20.41 340.43 -2.51 -22.92 By element: Atomic # 1 Polarization: -17.33 SS G_CDS: -1.13 Total: -18.47 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 4.30 Total: 5.36 kcal Atomic # 7 Polarization: 3.92 SS G_CDS: -4.15 Total: -0.23 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -3.56 Total: -11.54 kcal Atomic # 14 Polarization: -0.08 SS G_CDS: 2.04 Total: 1.96 kcal Total: -20.41 -2.51 -22.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_15413834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.267 kcal (2) G-P(sol) polarization free energy of solvation -20.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds