Wall clock time and date at job start Sat Mar 6 2021 20:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.85054 * 45.33390 * 4 3 2 6 6 C 1.53782 * 113.61871 * 176.53335 * 4 3 2 7 7 C 1.53777 * 87.08471 * 139.98088 * 6 4 3 8 8 H 1.09005 * 113.61553 * 89.11607 * 7 6 4 9 9 N 1.46499 * 113.61234 * 219.93633 * 7 6 4 10 10 C 1.34779 * 119.99584 * 204.99674 * 9 7 6 11 11 O 1.21628 * 120.00398 * 0.02562 * 10 9 7 12 12 C 1.47267 * 119.99773 * 179.97438 * 10 9 7 13 13 C 1.36333 * 126.96585 * 180.02562 * 12 10 9 14 14 C 1.50993 * 126.79828 * 359.97438 * 13 12 10 15 15 C 1.53392 * 108.25586 * 164.32717 * 14 13 12 16 16 C 1.53157 * 109.04387 * 48.46392 * 15 14 13 17 17 C 1.53135 * 109.52129 * 290.42079 * 16 15 14 18 18 N 1.35220 * 108.65645 * 179.97438 * 13 12 10 19 19 C 1.36419 * 109.90152 * 359.96889 * 18 13 12 20 20 C 1.50700 * 125.49665 * 180.02562 * 19 18 13 21 21 O 1.42898 * 109.46704 * 29.99919 * 20 19 18 22 22 Si 1.86294 * 109.47304 * 150.00295 * 20 19 18 23 23 C 1.34501 * 109.01027 * 359.77227 * 19 18 13 24 24 C 1.53785 * 113.61570 * 274.13969 * 4 3 2 25 25 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 26 26 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 27 27 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.09011 * 113.61074 * 254.53256 * 6 4 3 31 31 H 1.09002 * 113.61126 * 25.42909 * 6 4 3 32 32 H 0.96996 * 119.99994 * 25.00182 * 9 7 6 33 33 H 1.08998 * 109.70519 * 284.02518 * 14 13 12 34 34 H 1.09003 * 109.70394 * 44.63767 * 14 13 12 35 35 H 1.09007 * 109.53514 * 168.32612 * 15 14 13 36 36 H 1.08990 * 109.54628 * 288.58871 * 15 14 13 37 37 H 1.09001 * 109.46705 * 50.43946 * 16 15 14 38 38 H 1.09002 * 109.45958 * 170.41026 * 16 15 14 39 39 H 1.08997 * 109.56631 * 170.84022 * 17 16 15 40 40 H 1.08994 * 109.56427 * 291.18484 * 17 16 15 41 41 H 1.09004 * 109.46790 * 270.00139 * 20 19 18 42 42 H 0.96701 * 113.99969 * 60.00607 * 21 20 19 43 43 H 1.48502 * 110.00251 * 58.67944 * 22 20 19 44 44 H 1.48502 * 109.99953 * 180.02562 * 22 20 19 45 45 H 1.07998 * 126.81550 * 180.22173 * 23 19 18 46 46 H 1.09000 * 113.61195 * 334.56762 * 24 4 3 47 47 H 1.09001 * 113.61520 * 105.46896 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9014 0.4474 -0.7153 6 6 4.2607 2.5380 -0.0859 7 6 5.2661 1.9746 0.9322 8 1 6.1061 1.4528 0.4735 9 7 5.6848 2.9480 1.9438 10 6 6.8730 2.8065 2.5639 11 8 7.5979 1.8710 2.2833 12 6 7.2943 3.7853 3.5804 13 6 8.4580 3.7805 4.2905 14 6 9.5738 2.7680 4.1916 15 6 10.8205 3.3598 4.8612 16 6 10.4318 3.9237 6.2311 17 6 9.5611 5.1693 6.0435 18 7 8.4630 4.8484 5.1200 19 6 7.3110 5.5624 4.9647 20 6 6.9522 6.8188 5.7157 21 8 8.1453 7.5301 6.0513 22 14 5.8685 7.8930 4.6470 23 6 6.5494 4.9673 4.0293 24 6 4.1422 1.0343 1.4045 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 4.6965 2.7389 -1.0647 31 1 3.6734 3.3729 0.2965 32 1 5.1068 3.6942 2.1673 33 1 9.2831 1.8498 4.7019 34 1 9.7853 2.5555 3.1436 35 1 11.5713 2.5797 4.9877 36 1 11.2240 4.1586 4.2392 37 1 9.8740 3.1713 6.7887 38 1 11.3332 4.1904 6.7830 39 1 9.1509 5.4763 7.0055 40 1 10.1637 5.9766 5.6274 41 1 6.4168 6.5562 6.6281 42 1 8.6731 7.7960 5.2860 43 1 4.6390 7.1532 4.2647 44 1 5.5082 9.1356 5.3760 45 1 5.5809 5.2932 3.6800 46 1 3.5224 1.4573 2.1951 47 1 4.4825 0.0230 1.6273 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_16915396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:49:03 Heat of formation + Delta-G solvation = -48.191066 kcal Electronic energy + Delta-G solvation = -27573.240215 eV Core-core repulsion = 23723.774722 eV Total energy + Delta-G solvation = -3849.465493 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.79535 -40.98908 -39.49508 -38.16992 -37.90815 -36.84523 -34.49633 -33.45942 -31.17853 -30.03788 -29.10529 -27.01811 -26.68119 -26.45235 -24.62954 -24.53132 -22.67551 -21.73436 -21.23757 -20.57799 -19.57121 -18.81339 -17.64986 -17.29541 -17.08354 -16.90691 -16.80007 -16.57621 -16.02791 -15.83286 -15.64425 -15.57142 -15.31918 -15.11192 -15.06900 -14.69452 -14.53613 -14.41782 -13.93824 -13.87929 -13.44096 -13.26708 -13.15916 -12.94293 -12.67017 -12.38497 -12.31594 -12.10848 -12.03245 -11.99448 -11.82106 -11.75047 -11.62525 -11.38189 -10.86558 -10.69217 -10.59060 -10.03801 -9.57315 -9.05842 -4.91754 0.70883 1.06732 1.39272 1.67468 1.81720 2.03758 2.40722 2.51279 2.83958 3.35221 3.47805 3.49230 3.58324 3.63861 3.69673 3.80039 3.82447 3.84924 3.92733 4.13047 4.31815 4.34344 4.35624 4.39345 4.40971 4.44512 4.48376 4.55271 4.59700 4.61295 4.72564 4.73827 4.77967 4.80105 4.83113 4.84497 4.84820 4.97138 5.01322 5.03843 5.09004 5.16005 5.22503 5.33507 5.63057 5.70929 6.03173 6.21722 6.24120 6.62351 6.67038 7.35230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.070 3.930 4 C -0.105 4.105 5 H 0.094 0.906 6 C -0.119 4.119 7 C 0.120 3.880 8 H 0.096 0.904 9 N -0.705 5.705 10 C 0.588 3.412 11 O -0.590 6.590 12 C -0.256 4.256 13 C 0.106 3.894 14 C -0.054 4.054 15 C -0.122 4.122 16 C -0.136 4.136 17 C 0.105 3.895 18 N -0.424 5.424 19 C -0.009 4.009 20 C -0.047 4.047 21 O -0.552 6.552 22 Si 0.797 3.203 23 C -0.172 4.172 24 C -0.144 4.144 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.412 0.588 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.394 0.606 43 H -0.273 1.273 44 H -0.294 1.294 45 H 0.164 0.836 46 H 0.089 0.911 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 6.190 -0.285 6.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.006 4.006 4 C -0.124 4.124 5 H 0.112 0.888 6 C -0.157 4.157 7 C 0.015 3.985 8 H 0.114 0.886 9 N -0.356 5.356 10 C 0.378 3.622 11 O -0.472 6.472 12 C -0.266 4.266 13 C -0.013 4.013 14 C -0.092 4.092 15 C -0.160 4.160 16 C -0.174 4.174 17 C -0.014 4.014 18 N -0.100 5.100 19 C -0.118 4.118 20 C -0.156 4.156 21 O -0.359 6.359 22 Si 0.700 3.300 23 C -0.196 4.196 24 C -0.183 4.183 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.248 0.752 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.244 0.756 43 H -0.199 1.199 44 H -0.221 1.221 45 H 0.181 0.819 46 H 0.107 0.893 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.385 5.799 0.290 5.819 hybrid contribution -0.560 -0.406 0.654 0.952 sum -0.945 5.392 0.944 5.555 Atomic orbital electron populations 1.22884 0.79825 1.03534 1.00802 1.87861 1.21120 1.29279 1.95594 1.22623 0.92601 0.84278 1.01128 1.22292 0.93279 0.99015 0.97794 0.88752 1.23285 0.95933 0.96665 0.99815 1.22467 0.95805 0.90790 0.89473 0.88591 1.45643 1.19454 1.29832 1.40622 1.17654 0.80943 0.83565 0.80022 1.90733 1.54981 1.34702 1.66776 1.19962 0.98563 1.01545 1.06504 1.20540 0.96845 0.90778 0.93109 1.20439 0.91303 0.94869 1.02589 1.21692 0.96703 1.01661 0.95925 1.21946 1.00882 0.96467 0.98094 1.22309 0.86717 0.99092 0.93330 1.44046 1.16041 1.19340 1.30590 1.20963 0.89022 0.98787 1.03023 1.25004 0.94723 0.91431 1.04482 1.86461 1.36141 1.75323 1.37985 0.93130 0.77710 0.75566 0.83604 1.21923 1.00961 0.96250 1.00437 1.23545 0.97519 0.99835 0.97412 0.93327 0.93063 0.89197 0.91884 0.92298 0.89281 0.87403 0.75157 0.90697 0.89940 0.89432 0.90671 0.91888 0.87230 0.88641 0.87727 0.87191 0.75581 1.19913 1.22147 0.81883 0.89285 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 113.37 1.25 1.24 16 2 O -0.42 -2.22 10.70 -148.98 -1.59 -3.82 16 3 C 0.07 0.00 5.76 71.98 0.41 0.42 16 4 C -0.10 -0.03 4.00 -10.27 -0.04 -0.07 16 5 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 6 C -0.12 0.38 7.40 31.12 0.23 0.61 16 7 C 0.12 0.32 4.24 45.58 0.19 0.52 16 8 H 0.10 0.70 7.46 -2.38 -0.02 0.68 16 9 N -0.71 -2.13 5.36 -443.16 -2.37 -4.51 16 10 C 0.59 5.70 7.81 86.62 0.68 6.37 16 11 O -0.59 -9.95 14.93 -4.12 -0.06 -10.01 16 12 C -0.26 -1.74 6.28 -19.12 -0.12 -1.86 16 13 C 0.11 0.60 6.57 41.69 0.27 0.88 16 14 C -0.05 -0.25 5.32 30.07 0.16 -0.09 16 15 C -0.12 0.25 5.98 30.78 0.18 0.43 16 16 C -0.14 0.57 5.92 30.69 0.18 0.75 16 17 C 0.11 -0.39 5.32 86.33 0.46 0.07 16 18 N -0.42 -0.52 3.11 -493.61 -1.54 -2.06 16 19 C -0.01 0.00 6.15 40.99 0.25 0.25 16 20 C -0.05 0.15 2.99 71.24 0.21 0.37 16 21 O -0.55 2.43 10.68 -148.98 -1.59 0.84 16 22 Si 0.80 -4.15 31.28 68.60 2.15 -2.00 16 23 C -0.17 -0.23 9.08 23.64 0.21 -0.02 16 24 C -0.14 -0.42 7.45 31.18 0.23 -0.18 16 25 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.06 -0.12 7.88 -2.39 -0.02 -0.13 16 30 H 0.09 -0.38 8.14 -2.38 -0.02 -0.40 16 31 H 0.11 -0.75 8.08 -2.39 -0.02 -0.77 16 32 H 0.41 -1.01 7.85 -92.71 -0.73 -1.74 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.08 0.65 7.40 -2.39 -0.02 0.63 16 35 H 0.09 -0.31 8.14 -2.38 -0.02 -0.33 16 36 H 0.07 -0.21 8.12 -2.39 -0.02 -0.23 16 37 H 0.06 -0.10 8.11 -2.39 -0.02 -0.12 16 38 H 0.11 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.10 -0.31 7.69 -2.39 -0.02 -0.33 16 40 H 0.10 -0.76 7.94 -2.39 -0.02 -0.78 16 41 H 0.11 -0.22 7.96 -2.38 -0.02 -0.24 16 42 H 0.39 -4.45 8.64 -74.06 -0.64 -5.09 16 43 H -0.27 0.51 6.77 99.48 0.67 1.18 16 44 H -0.29 -0.53 7.11 99.48 0.71 0.18 16 45 H 0.16 -0.51 6.29 -2.91 -0.02 -0.53 16 46 H 0.09 0.15 7.92 -2.39 -0.02 0.14 16 47 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 Total: 0.00 -19.63 373.99 -0.63 -20.26 By element: Atomic # 1 Polarization: -8.00 SS G_CDS: -0.39 Total: -8.39 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 4.77 Total: 9.69 kcal Atomic # 7 Polarization: -2.65 SS G_CDS: -3.91 Total: -6.56 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -3.25 Total: -12.99 kcal Atomic # 14 Polarization: -4.15 SS G_CDS: 2.15 Total: -2.00 kcal Total: -19.63 -0.63 -20.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_16915396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.934 kcal (2) G-P(sol) polarization free energy of solvation -19.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds