Wall clock time and date at job start Sat Mar 6 2021 20:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00115 * 2 1 4 4 C 1.52993 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.85432 * 43.80836 * 4 3 2 6 6 C 1.53785 * 113.61415 * 175.00323 * 4 3 2 7 7 C 1.53782 * 87.08290 * 139.98304 * 6 4 3 8 8 H 1.09003 * 113.61662 * 89.19659 * 7 6 4 9 9 N 1.46499 * 113.61320 * 220.02351 * 7 6 4 10 10 C 1.34778 * 119.99475 * 204.99791 * 9 7 6 11 11 O 1.21555 * 120.00386 * 0.02562 * 10 9 7 12 12 C 1.47850 * 119.99593 * 179.97438 * 10 9 7 13 13 C 1.39559 * 120.14233 * 180.02562 * 12 10 9 14 14 C 1.37974 * 119.85192 * 180.02562 * 13 12 10 15 15 C 1.50704 * 119.92781 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.46992 * 90.00057 * 15 14 13 17 17 C 1.35905 * 116.99604 * 179.97438 * 16 15 14 18 18 C 1.38715 * 120.05074 * 179.72595 * 17 16 15 19 19 C 1.38163 * 119.93950 * 179.72540 * 18 17 16 20 20 C 1.50703 * 119.97099 * 180.27810 * 19 18 17 21 21 O 1.42897 * 109.46847 * 300.29680 * 20 19 18 22 22 Si 1.86303 * 109.47146 * 180.29594 * 20 19 18 23 23 C 1.38245 * 120.05744 * 0.57174 * 19 18 17 24 24 C 1.38283 * 120.11012 * 359.68064 * 23 19 18 25 25 C 1.38121 * 120.05809 * 0.04403 * 24 23 19 26 26 C 1.38336 * 120.14881 * 0.25371 * 14 13 12 27 27 C 1.38384 * 120.28665 * 359.48604 * 26 14 13 28 28 C 1.37940 * 120.14699 * 0.51379 * 27 26 14 29 29 C 1.53785 * 87.08035 * 334.56698 * 7 6 4 30 30 H 1.08999 * 109.47672 * 59.99691 * 1 2 3 31 31 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47233 * 299.99433 * 1 2 3 33 33 H 1.09003 * 109.46923 * 60.00497 * 3 2 1 34 34 H 1.09004 * 109.46996 * 300.00545 * 3 2 1 35 35 H 1.08999 * 113.61721 * 25.43282 * 6 4 3 36 36 H 1.09004 * 113.69083 * 254.54220 * 6 4 3 37 37 H 0.96997 * 120.00362 * 24.99018 * 9 7 6 38 38 H 1.08003 * 120.07137 * 359.97438 * 13 12 10 39 39 H 1.08996 * 109.46943 * 329.99964 * 15 14 13 40 40 H 1.08999 * 109.47285 * 210.00104 * 15 14 13 41 41 H 1.07998 * 120.02995 * 0.02562 * 18 17 16 42 42 H 1.09000 * 109.47027 * 60.29643 * 20 19 18 43 43 H 0.96704 * 113.99581 * 299.99564 * 21 20 19 44 44 H 1.48503 * 109.99754 * 58.67789 * 22 20 19 45 45 H 1.48498 * 109.99935 * 179.97438 * 22 20 19 46 46 H 1.08001 * 119.94243 * 179.70243 * 23 19 18 47 47 H 1.08007 * 119.97266 * 180.02562 * 24 23 19 48 48 H 1.07994 * 120.03028 * 179.97438 * 25 24 23 49 49 H 1.07991 * 119.86058 * 179.71915 * 26 14 13 50 50 H 1.08005 * 119.92925 * 180.25790 * 27 26 14 51 51 H 1.08002 * 120.07555 * 179.71794 * 28 27 26 52 52 H 1.08999 * 113.61404 * 139.98049 * 29 7 6 53 53 H 1.08994 * 113.61455 * 270.88701 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8999 0.4287 -0.6963 6 6 4.2603 2.5353 -0.1234 7 6 5.2679 1.9991 0.9072 8 1 6.1077 1.4666 0.4606 9 7 5.6872 2.9985 1.8928 10 6 6.8766 2.8742 2.5144 11 8 7.6016 1.9331 2.2568 12 6 7.3000 3.8831 3.5088 13 6 8.5312 3.7576 4.1538 14 6 8.9201 4.7023 5.0812 15 6 10.2490 4.5682 5.7792 16 8 11.2550 5.2442 5.0221 17 6 12.5204 5.2196 5.5173 18 6 13.5474 5.8507 4.8308 19 6 14.8319 5.8292 5.3391 20 6 15.9469 6.5200 4.5970 21 8 16.0760 5.9498 3.2931 22 14 17.5437 6.3011 5.5314 23 6 15.0963 5.1694 6.5248 24 6 14.0753 4.5350 7.2084 25 6 12.7884 4.5585 6.7073 26 6 8.0904 5.7693 5.3759 27 6 6.8707 5.9025 4.7359 28 6 6.4699 4.9651 3.8068 29 6 4.1453 1.0745 1.4068 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.6887 1.8463 0.8901 34 1 1.6885 1.8464 -0.8900 35 1 3.6739 3.3801 0.2379 36 1 4.6944 2.7116 -1.1077 37 1 5.1089 3.7498 2.0980 38 1 9.1777 2.9224 3.9282 39 1 10.5082 3.5132 5.8674 40 1 10.1836 5.0106 6.7732 41 1 13.3421 6.3626 3.9022 42 1 15.7206 7.5825 4.5082 43 1 16.2779 5.0041 3.2956 44 1 17.8471 4.8557 5.6870 45 1 18.6514 6.9772 4.8096 46 1 16.1020 5.1496 6.9180 47 1 14.2843 4.0205 8.1347 48 1 11.9914 4.0626 7.2413 49 1 8.3975 6.5036 6.1058 50 1 6.2293 6.7401 4.9674 51 1 5.5157 5.0677 3.3114 52 1 4.4861 0.0700 1.6575 53 1 3.5273 1.5198 2.1864 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_4549630.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:49:20 Heat of formation + Delta-G solvation = -64.800423 kcal Electronic energy + Delta-G solvation = -33221.731049 eV Core-core repulsion = 28605.384478 eV Total energy + Delta-G solvation = -4616.346572 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.67897 -41.29952 -40.37700 -39.50227 -38.87532 -38.18856 -37.37728 -34.98220 -33.34526 -32.48575 -32.21623 -31.06365 -29.66271 -27.77695 -27.02236 -26.69221 -26.62144 -25.38532 -23.67239 -23.20993 -23.04672 -22.15136 -21.46017 -20.60936 -19.27045 -18.84471 -17.95768 -17.86420 -17.37609 -17.24342 -17.15465 -16.99291 -16.92763 -16.81945 -16.26196 -16.22607 -16.10350 -15.85329 -15.63750 -15.44959 -15.20810 -14.88907 -14.78772 -14.50023 -14.14595 -14.11546 -13.87739 -13.53390 -13.48274 -13.47631 -13.23144 -13.01477 -12.96661 -12.79149 -12.59562 -12.42594 -12.20093 -12.09655 -12.03781 -11.95316 -11.68988 -11.59969 -11.44060 -11.10288 -10.70478 -10.60392 -10.28279 -10.05282 -9.95301 -9.93664 -9.27258 -4.91847 -0.29119 0.13415 0.19695 0.39293 1.28908 1.61669 1.64062 1.94762 1.99577 2.23873 2.65974 2.79778 2.85360 3.37220 3.40576 3.51424 3.53491 3.59937 3.66109 3.75438 3.77374 3.83801 3.87139 3.97645 4.07034 4.08431 4.17022 4.22495 4.24619 4.29630 4.36871 4.42262 4.46060 4.47863 4.53511 4.55010 4.58527 4.65711 4.67617 4.68988 4.77139 4.78978 4.84663 4.87137 4.97374 4.97580 5.02861 5.16407 5.19763 5.25024 5.28709 5.36621 5.37537 5.43674 5.50328 5.70609 5.76879 6.23368 6.35858 6.41206 6.44014 7.07501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.070 3.930 4 C -0.107 4.107 5 H 0.092 0.908 6 C -0.119 4.119 7 C 0.114 3.886 8 H 0.094 0.906 9 N -0.699 5.699 10 C 0.556 3.444 11 O -0.585 6.585 12 C -0.157 4.157 13 C -0.056 4.056 14 C -0.114 4.114 15 C 0.099 3.901 16 O -0.328 6.328 17 C 0.116 3.884 18 C -0.148 4.148 19 C -0.082 4.082 20 C -0.091 4.091 21 O -0.551 6.551 22 Si 0.782 3.218 23 C -0.158 4.158 24 C -0.073 4.073 25 C -0.208 4.208 26 C -0.068 4.068 27 C -0.125 4.125 28 C -0.068 4.068 29 C -0.142 4.142 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.417 0.583 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.386 0.614 44 H -0.281 1.281 45 H -0.303 1.303 46 H 0.149 0.851 47 H 0.158 0.842 48 H 0.148 0.852 49 H 0.152 0.848 50 H 0.166 0.834 51 H 0.160 0.840 52 H 0.056 0.944 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 5.285 5.805 10.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.006 4.006 4 C -0.126 4.126 5 H 0.110 0.890 6 C -0.157 4.157 7 C 0.009 3.991 8 H 0.112 0.888 9 N -0.350 5.350 10 C 0.344 3.656 11 O -0.466 6.466 12 C -0.160 4.160 13 C -0.076 4.076 14 C -0.114 4.114 15 C 0.025 3.975 16 O -0.243 6.243 17 C 0.071 3.929 18 C -0.167 4.167 19 C -0.082 4.082 20 C -0.199 4.199 21 O -0.359 6.359 22 Si 0.686 3.314 23 C -0.176 4.176 24 C -0.090 4.090 25 C -0.226 4.226 26 C -0.086 4.086 27 C -0.142 4.142 28 C -0.086 4.086 29 C -0.181 4.181 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.256 0.744 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.235 0.765 44 H -0.207 1.207 45 H -0.231 1.231 46 H 0.166 0.834 47 H 0.175 0.825 48 H 0.166 0.834 49 H 0.170 0.830 50 H 0.184 0.816 51 H 0.178 0.822 52 H 0.074 0.926 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.047 4.837 5.233 8.732 hybrid contribution -0.573 -0.885 -1.030 1.474 sum -5.620 3.953 4.203 8.054 Atomic orbital electron populations 1.22888 0.79730 1.03547 1.00884 1.87861 1.21212 1.29349 1.95613 1.22628 0.92376 0.84292 1.01320 1.22292 0.93492 0.98967 0.97802 0.88981 1.23307 0.95786 0.97033 0.99575 1.22530 0.95994 0.90554 0.89996 0.88840 1.45761 1.18986 1.28677 1.41572 1.18640 0.81413 0.84728 0.80775 1.90769 1.54944 1.34914 1.65963 1.19900 0.97349 0.97991 1.00755 1.21167 0.94936 0.98210 0.93241 1.19528 0.95706 0.96831 0.99376 1.21743 0.83270 0.97789 0.94689 1.86132 1.15227 1.72412 1.50537 1.19189 0.84123 0.96183 0.93432 1.20301 0.91248 1.03825 1.01278 1.20150 0.94003 0.98221 0.95836 1.25427 1.05756 1.00827 0.87890 1.86572 1.92783 1.29348 1.27156 0.93928 0.71880 0.79868 0.85695 1.21184 1.00586 1.00265 0.95541 1.21288 0.91247 0.96563 0.99950 1.21581 0.99744 1.04459 0.96819 1.21662 0.93518 0.95360 0.98068 1.21541 0.96705 1.00001 0.95978 1.21701 0.99194 0.91631 0.96094 1.23528 0.97155 0.99892 0.97493 0.93114 0.89263 0.93096 0.91844 0.91949 0.86838 0.89538 0.74443 0.86582 0.90556 0.88390 0.86418 0.85878 0.76510 1.20723 1.23143 0.83433 0.82481 0.83413 0.83040 0.81648 0.82238 0.92553 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.71 10.70 -148.98 -1.59 -3.30 16 3 C 0.07 -0.12 5.77 71.98 0.42 0.30 16 4 C -0.11 0.14 4.01 -10.27 -0.04 0.10 16 5 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 6 C -0.12 0.60 7.39 31.12 0.23 0.83 16 7 C 0.11 0.09 4.24 45.52 0.19 0.28 16 8 H 0.09 0.59 7.46 -2.39 -0.02 0.57 16 9 N -0.70 0.19 5.31 -442.89 -2.35 -2.16 16 10 C 0.56 4.14 7.77 86.79 0.67 4.82 16 11 O -0.58 -9.95 15.95 -3.89 -0.06 -10.01 16 12 C -0.16 -0.59 5.87 -20.09 -0.12 -0.71 16 13 C -0.06 -0.34 9.24 22.53 0.21 -0.13 16 14 C -0.11 -0.22 5.50 -19.90 -0.11 -0.33 16 15 C 0.10 0.06 4.86 71.24 0.35 0.40 16 16 O -0.33 -2.15 10.12 -92.48 -0.94 -3.09 16 17 C 0.12 0.63 6.69 22.51 0.15 0.78 16 18 C -0.15 -0.95 9.55 22.37 0.21 -0.74 16 19 C -0.08 -0.22 5.39 -19.88 -0.11 -0.33 16 20 C -0.09 -0.15 2.82 71.24 0.20 0.05 16 21 O -0.55 -3.08 12.76 -148.98 -1.90 -4.98 16 22 Si 0.78 -1.05 29.79 68.60 2.04 1.00 16 23 C -0.16 0.10 8.67 22.28 0.19 0.29 16 24 C -0.07 0.11 10.04 22.25 0.22 0.33 16 25 C -0.21 -0.15 9.04 22.36 0.20 0.05 16 26 C -0.07 0.18 9.69 22.33 0.22 0.39 16 27 C -0.12 0.65 10.03 22.23 0.22 0.88 16 28 C -0.07 0.26 9.54 22.53 0.21 0.47 16 29 C -0.14 -0.07 7.43 31.12 0.23 0.16 16 30 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.05 -0.18 8.14 -2.38 -0.02 -0.20 16 33 H 0.06 -0.28 7.84 -2.39 -0.02 -0.30 16 34 H 0.06 -0.24 8.14 -2.38 -0.02 -0.26 16 35 H 0.11 -1.10 8.08 -2.39 -0.02 -1.12 16 36 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.42 -3.21 6.76 -92.71 -0.63 -3.84 16 38 H 0.12 1.10 7.65 -2.91 -0.02 1.08 16 39 H 0.08 -0.03 7.60 -2.39 -0.02 -0.05 16 40 H 0.10 -0.43 7.60 -2.39 -0.02 -0.45 16 41 H 0.12 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.12 0.04 7.96 -2.39 -0.02 0.02 16 43 H 0.39 0.02 8.70 -74.05 -0.64 -0.62 16 44 H -0.28 -0.60 7.11 99.48 0.71 0.11 16 45 H -0.30 -1.92 7.11 99.48 0.71 -1.22 16 46 H 0.15 -0.75 4.87 -2.91 -0.01 -0.77 16 47 H 0.16 -1.13 8.06 -2.91 -0.02 -1.15 16 48 H 0.15 -0.54 6.30 -2.91 -0.02 -0.56 16 49 H 0.15 -1.06 8.06 -2.91 -0.02 -1.08 16 50 H 0.17 -1.88 8.06 -2.91 -0.02 -1.90 16 51 H 0.16 -1.76 6.41 -2.91 -0.02 -1.78 16 52 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 53 H 0.10 -0.19 7.90 -2.39 -0.02 -0.21 16 Total: 0.00 -26.69 437.77 -0.08 -26.77 By element: Atomic # 1 Polarization: -13.03 SS G_CDS: -0.29 Total: -13.32 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.01 Total: 9.10 kcal Atomic # 7 Polarization: 0.19 SS G_CDS: -2.35 Total: -2.16 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -4.49 Total: -21.38 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.04 Total: 1.00 kcal Total: -26.69 -0.08 -26.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_4549630.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.033 kcal (2) G-P(sol) polarization free energy of solvation -26.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds