Wall clock time and date at job start Sat Mar 6 2021 20:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42907 * 113.99893 * 2 1 4 4 C 1.52999 * 109.46597 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.90747 * 43.75199 * 4 3 2 6 6 C 1.53783 * 113.61092 * 174.99857 * 4 3 2 7 7 C 1.53771 * 87.08300 * 139.98278 * 6 4 3 8 8 H 1.09006 * 113.61888 * 89.19749 * 7 6 4 9 9 N 1.46500 * 113.61578 * 220.01935 * 7 6 4 10 10 C 1.34779 * 120.00169 * 204.99635 * 9 7 6 11 11 O 1.21282 * 119.99922 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.42905 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.35896 * 117.00039 * 180.02562 * 13 12 10 15 15 C 1.38709 * 120.05698 * 179.72061 * 14 13 12 16 16 N 1.47999 * 120.02668 * 0.02562 * 15 14 13 17 17 O 1.21809 * 119.99780 * 179.97438 * 16 15 14 18 18 O 1.21798 * 120.00075 * 359.97438 * 16 15 14 19 19 C 1.38166 * 119.94125 * 179.74409 * 15 14 13 20 20 C 1.38248 * 120.05857 * 0.53655 * 19 15 14 21 21 C 1.50703 * 119.94503 * 179.72483 * 20 19 15 22 22 O 1.42904 * 109.46886 * 300.01667 * 21 20 19 23 23 Si 1.86300 * 109.46884 * 180.02562 * 21 20 19 24 24 C 1.38281 * 120.10966 * 359.73955 * 20 19 15 25 25 C 1.38131 * 120.05780 * 359.97438 * 24 20 19 26 26 C 1.53779 * 113.61804 * 272.49264 * 4 3 2 27 27 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47394 * 300.00807 * 1 2 3 29 29 H 1.09003 * 109.46414 * 60.00616 * 1 2 3 30 30 H 1.09003 * 109.47004 * 59.99855 * 3 2 1 31 31 H 1.08994 * 109.46609 * 299.99573 * 3 2 1 32 32 H 1.09001 * 113.61429 * 25.43036 * 6 4 3 33 33 H 1.09000 * 113.69015 * 254.54483 * 6 4 3 34 34 H 0.96996 * 119.99986 * 25.00232 * 9 7 6 35 35 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 36 36 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 37 37 H 1.08009 * 119.97192 * 180.27221 * 19 15 14 38 38 H 1.08997 * 109.47353 * 60.01185 * 21 20 19 39 39 H 0.96703 * 113.99524 * 300.00386 * 22 21 20 40 40 H 1.48504 * 110.00017 * 58.67839 * 23 21 20 41 41 H 1.48498 * 109.99618 * 179.97438 * 23 21 20 42 42 H 1.07996 * 119.97402 * 180.02562 * 24 20 19 43 43 H 1.07996 * 120.02918 * 180.02562 * 25 24 20 44 44 H 1.09001 * 113.61225 * 105.47645 * 26 4 3 45 45 H 1.09003 * 113.61255 * 334.57736 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9014 0.4280 -0.6934 6 6 4.2605 2.5352 -0.1222 7 6 5.2672 1.9996 0.9094 8 1 6.1074 1.4668 0.4638 9 7 5.6858 2.9994 1.8950 10 6 6.8747 2.8754 2.5176 11 8 7.5982 1.9362 2.2617 12 6 7.3050 3.9036 3.5319 13 8 8.5915 3.5549 4.0472 14 6 9.1280 4.3848 4.9800 15 6 10.3712 4.1037 5.5272 16 7 11.1154 2.8995 5.0951 17 8 12.2073 2.6534 5.5756 18 8 10.6359 2.1547 4.2592 19 6 10.9168 4.9519 6.4716 20 6 10.2199 6.0740 6.8794 21 6 10.8147 6.9941 7.9142 22 8 11.0402 6.2678 9.1241 23 14 9.6382 8.4004 8.2444 24 6 8.9778 6.3534 6.3397 25 6 8.4305 5.5118 5.3909 26 6 4.1442 1.0751 1.4086 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.6737 3.3802 0.2383 33 1 4.6953 2.7110 -1.1061 34 1 5.1073 3.7506 2.0995 35 1 6.5825 3.9339 4.3475 36 1 7.3577 4.8830 3.0565 37 1 11.8868 4.7358 6.8947 38 1 11.7612 7.3906 7.5468 39 1 10.2393 5.8857 9.5085 40 1 8.3333 7.8709 8.7157 41 1 10.2129 9.3146 9.2637 42 1 8.4355 7.2308 6.6596 43 1 7.4606 5.7307 4.9694 44 1 4.4849 0.0707 1.6600 45 1 3.5256 1.5207 2.1876 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12906260_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:49:38 Heat of formation + Delta-G solvation = -83.447148 kcal Electronic energy + Delta-G solvation = -30639.160846 eV Core-core repulsion = 26014.969056 eV Total energy + Delta-G solvation = -4624.191790 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.02280 -41.80714 -41.19708 -40.10488 -39.28300 -38.21926 -37.62424 -37.12085 -34.78422 -33.51388 -32.41180 -30.60777 -29.28505 -27.60050 -27.07123 -26.81838 -26.62316 -24.43689 -23.38807 -22.78108 -21.77893 -20.81463 -20.47443 -19.45071 -19.24736 -18.48953 -18.34525 -18.30726 -17.75659 -17.65479 -17.32715 -17.09756 -16.90509 -16.56756 -16.37060 -16.08188 -15.86052 -15.69548 -15.59744 -15.11123 -14.92780 -14.28473 -14.12091 -13.89954 -13.83414 -13.65628 -13.31630 -13.31000 -13.10038 -12.59983 -12.55573 -12.48059 -12.19759 -12.16514 -12.02575 -11.84939 -11.80123 -11.73222 -11.50364 -10.98410 -10.94811 -10.90300 -10.66948 -10.18858 -9.92667 -5.23504 -1.13746 -0.39333 0.37669 0.53031 0.99156 1.07958 1.31692 1.38930 1.74404 1.92012 2.18613 2.68943 2.95918 3.00890 3.14501 3.20987 3.28996 3.40695 3.45555 3.52861 3.55238 3.59045 3.69022 3.71241 3.77233 4.13196 4.16477 4.19078 4.23890 4.32648 4.33803 4.41843 4.42128 4.45170 4.49953 4.61190 4.66404 4.69002 4.72364 4.87626 4.91650 4.97597 5.12419 5.36598 5.45820 5.70244 6.13266 6.14479 6.24590 6.93712 7.02022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.073 3.927 4 C -0.107 4.107 5 H 0.106 0.894 6 C -0.137 4.137 7 C 0.125 3.875 8 H 0.121 0.879 9 N -0.718 5.718 10 C 0.514 3.486 11 O -0.495 6.495 12 C 0.030 3.970 13 O -0.253 6.253 14 C 0.200 3.800 15 C -0.076 4.076 16 N 0.028 4.972 17 O -0.177 6.177 18 O -0.117 6.117 19 C 0.009 3.991 20 C -0.156 4.156 21 C -0.072 4.072 22 O -0.525 6.525 23 Si 0.688 3.312 24 C -0.024 4.024 25 C -0.210 4.210 26 C -0.144 4.144 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.401 0.599 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.164 0.836 38 H 0.126 0.874 39 H 0.378 0.622 40 H -0.256 1.256 41 H -0.251 1.251 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.078 0.922 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 9.501 -1.027 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.004 4.004 4 C -0.126 4.126 5 H 0.124 0.876 6 C -0.175 4.175 7 C 0.021 3.979 8 H 0.139 0.861 9 N -0.371 5.371 10 C 0.297 3.703 11 O -0.367 6.367 12 C -0.048 4.048 13 O -0.162 6.162 14 C 0.150 3.850 15 C -0.160 4.160 16 N 0.548 4.452 17 O -0.386 6.386 18 O -0.341 6.341 19 C -0.010 4.010 20 C -0.158 4.158 21 C -0.182 4.182 22 O -0.331 6.331 23 Si 0.588 3.412 24 C -0.042 4.042 25 C -0.229 4.229 26 C -0.183 4.183 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.236 0.764 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.182 0.818 38 H 0.144 0.856 39 H 0.226 0.774 40 H -0.181 1.181 41 H -0.175 1.175 42 H 0.166 0.834 43 H 0.174 0.826 44 H 0.097 0.903 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.684 9.626 -0.574 12.976 hybrid contribution -0.724 -0.472 0.730 1.131 sum -9.407 9.154 0.156 13.127 Atomic orbital electron populations 1.22768 0.80760 1.03080 0.99990 1.87908 1.19861 1.27735 1.95395 1.22507 0.92758 0.84978 1.00176 1.22337 0.93179 0.98375 0.98722 0.87611 1.23367 0.96957 0.97145 1.00068 1.22580 0.96512 0.89883 0.88972 0.86090 1.45786 1.19409 1.28937 1.42995 1.19857 0.81909 0.86529 0.81973 1.90869 1.52153 1.31525 1.62108 1.22752 0.84709 0.99316 0.98051 1.86509 1.32611 1.45879 1.51238 1.18704 0.89896 0.89170 0.87191 1.20587 0.94249 0.93513 1.07654 1.43341 1.00658 1.01423 0.99757 1.94559 1.06937 1.78573 1.58493 1.94701 1.70760 1.44102 1.24567 1.20843 1.00262 0.90060 0.89801 1.20253 0.95685 0.97851 1.01971 1.25074 1.09462 0.99701 0.83942 1.86661 1.36751 1.71297 1.38417 0.95186 0.76932 0.79609 0.89498 1.21260 0.93402 0.97317 0.92222 1.21268 1.02684 0.95574 1.03337 1.23543 0.96995 1.01097 0.96666 0.89407 0.94061 0.93969 0.93206 0.93014 0.89295 0.89922 0.76399 0.88104 0.87950 0.81804 0.85613 0.77419 1.18132 1.17503 0.83361 0.82604 0.90328 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 101.05 1.11 1.08 16 2 O -0.39 -0.54 10.70 -35.23 -0.38 -0.92 16 3 C 0.07 -0.09 5.78 37.16 0.21 0.12 16 4 C -0.11 0.18 4.01 -89.81 -0.36 -0.18 16 5 H 0.11 -0.09 8.14 -51.93 -0.42 -0.51 16 6 C -0.14 0.48 7.39 -25.92 -0.19 0.29 16 7 C 0.12 -0.20 4.24 -67.12 -0.28 -0.49 16 8 H 0.12 0.07 7.46 -51.93 -0.39 -0.32 16 9 N -0.72 2.04 5.35 -53.02 -0.28 1.76 16 10 C 0.51 0.19 7.91 -10.99 -0.09 0.11 16 11 O -0.49 -3.03 16.10 -14.35 -0.23 -3.26 16 12 C 0.03 -0.08 5.22 36.01 0.19 0.10 16 13 O -0.25 -0.51 7.68 -49.77 -0.38 -0.90 16 14 C 0.20 0.10 6.67 -39.22 -0.26 -0.16 16 15 C -0.08 -0.20 6.87 -79.81 -0.55 -0.75 16 16 N 0.03 0.18 4.45 34.03 0.15 0.34 16 17 O -0.18 -1.29 18.45 -29.46 -0.54 -1.83 16 18 O -0.12 -1.01 17.24 -36.49 -0.63 -1.64 16 19 C 0.01 0.00 9.11 -39.60 -0.36 -0.36 16 20 C -0.16 0.35 5.39 -104.60 -0.56 -0.21 16 21 C -0.07 0.19 2.82 36.01 0.10 0.30 16 22 O -0.52 0.37 12.77 -35.23 -0.45 -0.08 16 23 Si 0.69 -2.64 29.78 -169.99 -5.06 -7.70 16 24 C -0.02 0.10 8.66 -39.61 -0.34 -0.24 16 25 C -0.21 0.74 9.04 -39.43 -0.36 0.39 16 26 C -0.14 0.19 7.43 -25.92 -0.19 -0.01 16 27 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 28 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 29 H 0.04 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.05 -0.11 7.84 -51.93 -0.41 -0.52 16 31 H 0.05 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.09 -0.45 8.08 -51.93 -0.42 -0.87 16 33 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 34 H 0.40 -2.59 8.73 -40.82 -0.36 -2.95 16 35 H 0.10 -0.60 7.66 -51.93 -0.40 -1.00 16 36 H 0.10 -0.64 7.66 -51.93 -0.40 -1.03 16 37 H 0.16 0.07 7.61 -52.48 -0.40 -0.33 16 38 H 0.13 -0.42 7.96 -51.93 -0.41 -0.83 16 39 H 0.38 -1.37 8.70 45.56 0.40 -0.97 16 40 H -0.26 0.60 7.11 56.52 0.40 1.00 16 41 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 42 H 0.15 -1.00 4.87 -52.49 -0.26 -1.26 16 43 H 0.16 -1.12 6.30 -52.49 -0.33 -1.45 16 44 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 45 H 0.09 -0.18 7.90 -51.93 -0.41 -0.59 16 LS Contribution 386.06 15.07 5.82 5.82 Total: 0.00 -13.01 386.06 -9.86 -22.87 By element: Atomic # 1 Polarization: -8.51 SS G_CDS: -5.94 Total: -14.45 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.93 Total: -0.01 kcal Atomic # 7 Polarization: 2.23 SS G_CDS: -0.13 Total: 2.09 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -2.61 Total: -8.63 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: -5.06 Total: -7.70 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -13.01 -9.86 -22.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.575 kcal (2) G-P(sol) polarization free energy of solvation -13.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds