Wall clock time and date at job start Sat Mar 6 2021 20:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00066 * 2 1 4 4 C 1.52999 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.84888 * 43.80618 * 4 3 2 6 6 C 1.53779 * 113.61178 * 175.00495 * 4 3 2 7 7 C 1.53776 * 87.08216 * 139.98297 * 6 4 3 8 8 H 1.08998 * 113.61625 * 89.20087 * 7 6 4 9 9 N 1.46510 * 113.61216 * 220.01825 * 7 6 4 10 10 C 1.34778 * 119.99489 * 203.46924 * 9 7 6 11 11 O 1.21280 * 120.00113 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99450 * 180.02562 * 10 9 7 13 13 O 1.42899 * 109.46967 * 180.02562 * 12 10 9 14 14 C 1.35895 * 116.99939 * 179.97438 * 13 12 10 15 15 C 1.38718 * 120.05729 * 180.23009 * 14 13 12 16 16 C 1.38162 * 119.94499 * 180.31360 * 15 14 13 17 17 C 1.50693 * 119.97359 * 179.70075 * 16 15 14 18 18 O 1.42907 * 109.47661 * 299.73159 * 17 16 15 19 19 Si 1.86298 * 109.47618 * 179.72849 * 17 16 15 20 20 C 1.38242 * 120.05317 * 359.43443 * 16 15 14 21 21 C 1.38283 * 120.11377 * 0.28965 * 20 16 15 22 22 C 1.38117 * 120.05780 * 0.02562 * 21 20 16 23 23 C 1.53777 * 87.17326 * 334.60743 * 7 6 4 24 24 H 1.08990 * 109.47268 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47171 * 300.00305 * 1 2 3 26 26 H 1.09008 * 109.46794 * 59.99579 * 1 2 3 27 27 H 1.09004 * 109.46375 * 59.99868 * 3 2 1 28 28 H 1.08996 * 109.47042 * 300.00602 * 3 2 1 29 29 H 1.09002 * 113.61494 * 25.42833 * 6 4 3 30 30 H 1.09001 * 113.69100 * 254.54130 * 6 4 3 31 31 H 0.97000 * 119.99581 * 23.46947 * 9 7 6 32 32 H 1.08998 * 109.47437 * 59.99864 * 12 10 9 33 33 H 1.09003 * 109.46933 * 299.99579 * 12 10 9 34 34 H 1.08000 * 120.02591 * 0.02562 * 15 14 13 35 35 H 1.09000 * 109.46936 * 59.72782 * 17 16 15 36 36 H 0.96697 * 114.00527 * 179.97438 * 18 17 16 37 37 H 1.48506 * 109.99834 * 298.68714 * 19 17 16 38 38 H 1.48502 * 110.00011 * 59.99978 * 19 17 16 39 39 H 1.08005 * 119.93975 * 180.27401 * 20 16 15 40 40 H 1.08001 * 119.97334 * 179.97438 * 21 20 16 41 41 H 1.07997 * 120.03083 * 179.97438 * 22 21 20 42 42 H 1.08996 * 113.61707 * 139.94168 * 23 7 6 43 43 H 1.09005 * 113.61393 * 270.84552 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9004 0.4284 -0.6944 6 6 4.2604 2.5352 -0.1220 7 6 5.2672 1.9994 0.9096 8 1 6.1073 1.4668 0.4639 9 7 5.6857 2.9993 1.8953 10 6 6.8607 2.8587 2.5404 11 8 7.5713 1.9044 2.3052 12 6 7.2910 3.8869 3.5547 13 8 8.5614 3.5194 4.0960 14 6 9.0963 4.3473 5.0315 15 6 10.3291 4.0538 5.5956 16 6 10.8677 4.8937 6.5513 17 6 12.2038 4.5720 7.1695 18 8 12.1310 3.3067 7.8298 19 14 12.6507 5.8925 8.4052 20 6 10.1845 6.0319 6.9370 21 6 8.9580 6.3298 6.3720 22 6 8.4122 5.4900 5.4209 23 6 4.1460 1.0732 1.4096 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.6736 3.3801 0.2385 30 1 4.6953 2.7111 -1.1059 31 1 5.1172 3.7623 2.0835 32 1 6.5545 3.9365 4.3567 33 1 7.3700 4.8615 3.0730 34 1 10.8653 3.1671 5.2914 35 1 12.9645 4.5316 6.3899 36 1 12.9578 3.0348 8.2513 37 1 12.7608 7.2081 7.7252 38 1 11.6212 5.9577 9.4735 39 1 10.6093 6.6896 7.6810 40 1 8.4260 7.2194 6.6752 41 1 7.4541 5.7228 4.9803 42 1 4.4883 0.0691 1.6600 43 1 3.5279 1.5177 2.1897 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12906260_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:49:48 Heat of formation + Delta-G solvation = -88.872932 kcal Electronic energy + Delta-G solvation = -24261.645899 eV Core-core repulsion = 20468.235265 eV Total energy + Delta-G solvation = -3793.410634 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62267 -41.02160 -39.81727 -38.81253 -38.15213 -37.25389 -34.72244 -32.61069 -31.76513 -30.17392 -28.94071 -27.03911 -26.81221 -26.62117 -23.81381 -23.68573 -22.25145 -21.59250 -20.70635 -19.16697 -18.41730 -18.24752 -17.76722 -17.46495 -17.43977 -17.17641 -16.86787 -16.79689 -16.02914 -15.86964 -15.71034 -15.49038 -15.20449 -14.71733 -14.56065 -14.23561 -14.11622 -13.75587 -13.63141 -13.60812 -13.29088 -13.21972 -13.02928 -12.49322 -12.38107 -12.19140 -12.12603 -12.10776 -11.79112 -11.78123 -11.48028 -10.86924 -10.65021 -10.40561 -10.14701 -9.88338 -9.28466 -4.96964 0.17880 0.37497 1.24495 1.45573 1.46561 1.63975 1.97178 2.50745 2.61991 2.73120 3.30774 3.36628 3.45101 3.50195 3.68850 3.72660 3.77904 3.79389 3.86881 3.89340 3.95925 4.17487 4.20966 4.24096 4.26147 4.35673 4.44028 4.47001 4.49336 4.52953 4.58348 4.62938 4.71366 4.73888 4.90780 4.95117 4.99439 5.15885 5.19547 5.30848 5.41183 5.43911 5.61248 6.14963 6.22732 6.36973 6.62908 7.08004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.072 3.928 4 C -0.107 4.107 5 H 0.105 0.895 6 C -0.137 4.137 7 C 0.124 3.876 8 H 0.119 0.881 9 N -0.718 5.718 10 C 0.517 3.483 11 O -0.510 6.510 12 C 0.040 3.960 13 O -0.287 6.287 14 C 0.131 3.869 15 C -0.117 4.117 16 C -0.035 4.035 17 C -0.075 4.075 18 O -0.544 6.544 19 Si 0.689 3.311 20 C -0.161 4.161 21 C -0.071 4.071 22 C -0.207 4.207 23 C -0.144 4.144 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.402 0.598 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.078 0.922 36 H 0.383 0.617 37 H -0.255 1.255 38 H -0.250 1.250 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 4.775 0.128 5.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.004 4.004 4 C -0.126 4.126 5 H 0.123 0.877 6 C -0.175 4.175 7 C 0.020 3.980 8 H 0.137 0.863 9 N -0.371 5.371 10 C 0.301 3.699 11 O -0.384 6.384 12 C -0.039 4.039 13 O -0.199 6.199 14 C 0.086 3.914 15 C -0.135 4.135 16 C -0.035 4.035 17 C -0.185 4.185 18 O -0.350 6.350 19 Si 0.590 3.410 20 C -0.179 4.179 21 C -0.089 4.089 22 C -0.225 4.225 23 C -0.183 4.183 24 H 0.106 0.894 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.237 0.763 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.156 0.844 35 H 0.096 0.904 36 H 0.231 0.769 37 H -0.180 1.180 38 H -0.175 1.175 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.136 4.504 0.041 4.985 hybrid contribution -1.147 0.708 -0.377 1.400 sum -3.283 5.212 -0.336 6.169 Atomic orbital electron populations 1.22766 0.80760 1.03068 1.00006 1.87903 1.19866 1.27747 1.95399 1.22508 0.92750 0.84969 1.00206 1.22365 0.93182 0.98331 0.98702 0.87656 1.23358 0.96967 0.97174 1.00018 1.22561 0.96441 0.89970 0.89050 0.86305 1.45815 1.20934 1.27956 1.42424 1.20062 0.81463 0.86629 0.81722 1.90789 1.52736 1.31281 1.63553 1.22488 0.86198 0.98182 0.97061 1.86175 1.33515 1.47243 1.52975 1.19020 0.93230 0.89642 0.89523 1.20248 0.94048 1.01292 0.97928 1.19141 0.94872 0.94216 0.95265 1.24742 0.96376 0.95163 1.02239 1.86504 1.39508 1.35528 1.73488 0.95300 0.88201 0.76860 0.80629 1.20793 0.96568 0.98281 1.02275 1.20841 0.94551 0.98703 0.94809 1.21270 1.01913 0.96441 1.02923 1.23569 0.97025 1.01039 0.96652 0.89410 0.94037 0.93982 0.93174 0.93006 0.89261 0.89935 0.76318 0.88745 0.88739 0.84379 0.90430 0.76884 1.17972 1.17506 0.86233 0.85110 0.85076 0.90367 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 11.01 101.05 1.11 1.09 16 2 O -0.39 -0.72 10.70 -35.23 -0.38 -1.10 16 3 C 0.07 -0.05 5.78 37.16 0.21 0.17 16 4 C -0.11 0.12 4.01 -89.72 -0.36 -0.24 16 5 H 0.11 -0.04 8.14 -51.93 -0.42 -0.46 16 6 C -0.14 0.37 7.39 -25.92 -0.19 0.18 16 7 C 0.12 -0.08 4.21 -67.12 -0.28 -0.37 16 8 H 0.12 0.15 7.50 -51.93 -0.39 -0.24 16 9 N -0.72 1.00 5.36 -53.01 -0.28 0.72 16 10 C 0.52 1.01 7.91 -10.98 -0.09 0.92 16 11 O -0.51 -3.61 16.12 -14.35 -0.23 -3.84 16 12 C 0.04 -0.01 5.22 36.01 0.19 0.18 16 13 O -0.29 -1.16 9.67 -39.32 -0.38 -1.54 16 14 C 0.13 0.45 6.69 -39.21 -0.26 0.19 16 15 C -0.12 -0.47 9.56 -39.43 -0.38 -0.85 16 16 C -0.03 -0.11 5.42 -104.65 -0.57 -0.68 16 17 C -0.07 -0.05 2.81 36.00 0.10 0.05 16 18 O -0.54 -0.59 12.75 -35.23 -0.45 -1.04 16 19 Si 0.69 -0.51 29.79 -169.99 -5.06 -5.58 16 20 C -0.16 -0.43 8.67 -39.56 -0.34 -0.77 16 21 C -0.07 -0.10 10.04 -39.61 -0.40 -0.49 16 22 C -0.21 -0.25 9.04 -39.43 -0.36 -0.61 16 23 C -0.14 0.07 7.45 -25.83 -0.19 -0.13 16 24 H 0.09 -0.11 8.14 -51.93 -0.42 -0.54 16 25 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.04 -0.06 8.14 -51.92 -0.42 -0.49 16 27 H 0.05 -0.08 7.85 -51.93 -0.41 -0.49 16 28 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 29 H 0.09 -0.37 8.07 -51.93 -0.42 -0.79 16 30 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 31 H 0.40 -1.91 8.71 -40.82 -0.36 -2.27 16 32 H 0.09 -0.25 7.66 -51.93 -0.40 -0.64 16 33 H 0.09 -0.27 7.66 -51.93 -0.40 -0.67 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.08 -0.07 7.96 -51.93 -0.41 -0.48 16 36 H 0.38 -1.59 8.74 45.56 0.40 -1.20 16 37 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 38 H -0.25 -0.61 7.11 56.52 0.40 -0.20 16 39 H 0.12 0.23 4.87 -52.48 -0.26 -0.03 16 40 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 41 H 0.13 -0.25 6.30 -52.49 -0.33 -0.58 16 42 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.09 -0.09 7.90 -51.93 -0.41 -0.50 16 LS Contribution 360.14 15.07 5.43 5.43 Total: 0.00 -10.74 360.14 -9.54 -20.28 By element: Atomic # 1 Polarization: -5.58 SS G_CDS: -6.38 Total: -11.96 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.80 Total: -1.37 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -0.28 Total: 0.72 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -1.44 Total: -7.52 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: -5.06 Total: -5.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -10.74 -9.54 -20.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.594 kcal (2) G-P(sol) polarization free energy of solvation -10.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds