Wall clock time and date at job start Sat Mar 6 2021 20:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00066 * 2 1 4 4 C 1.52999 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.84888 * 43.80618 * 4 3 2 6 6 C 1.53779 * 113.61178 * 175.00495 * 4 3 2 7 7 C 1.53776 * 87.08216 * 139.98297 * 6 4 3 8 8 H 1.08998 * 113.61625 * 89.20087 * 7 6 4 9 9 N 1.46510 * 113.61216 * 220.01825 * 7 6 4 10 10 C 1.34778 * 119.99489 * 203.46924 * 9 7 6 11 11 O 1.21280 * 120.00113 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99450 * 180.02562 * 10 9 7 13 13 O 1.42899 * 109.46967 * 180.02562 * 12 10 9 14 14 C 1.35895 * 116.99939 * 179.97438 * 13 12 10 15 15 C 1.38718 * 120.05729 * 180.23009 * 14 13 12 16 16 C 1.38162 * 119.94499 * 180.31360 * 15 14 13 17 17 C 1.50693 * 119.97359 * 179.70075 * 16 15 14 18 18 O 1.42907 * 109.47661 * 299.73159 * 17 16 15 19 19 Si 1.86298 * 109.47618 * 179.72849 * 17 16 15 20 20 C 1.38242 * 120.05317 * 359.43443 * 16 15 14 21 21 C 1.38283 * 120.11377 * 0.28965 * 20 16 15 22 22 C 1.38117 * 120.05780 * 0.02562 * 21 20 16 23 23 C 1.53777 * 87.17326 * 334.60743 * 7 6 4 24 24 H 1.08990 * 109.47268 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47171 * 300.00305 * 1 2 3 26 26 H 1.09008 * 109.46794 * 59.99579 * 1 2 3 27 27 H 1.09004 * 109.46375 * 59.99868 * 3 2 1 28 28 H 1.08996 * 109.47042 * 300.00602 * 3 2 1 29 29 H 1.09002 * 113.61494 * 25.42833 * 6 4 3 30 30 H 1.09001 * 113.69100 * 254.54130 * 6 4 3 31 31 H 0.97000 * 119.99581 * 23.46947 * 9 7 6 32 32 H 1.08998 * 109.47437 * 59.99864 * 12 10 9 33 33 H 1.09003 * 109.46933 * 299.99579 * 12 10 9 34 34 H 1.08000 * 120.02591 * 0.02562 * 15 14 13 35 35 H 1.09000 * 109.46936 * 59.72782 * 17 16 15 36 36 H 0.96697 * 114.00527 * 179.97438 * 18 17 16 37 37 H 1.48506 * 109.99834 * 298.68714 * 19 17 16 38 38 H 1.48502 * 110.00011 * 59.99978 * 19 17 16 39 39 H 1.08005 * 119.93975 * 180.27401 * 20 16 15 40 40 H 1.08001 * 119.97334 * 179.97438 * 21 20 16 41 41 H 1.07997 * 120.03083 * 179.97438 * 22 21 20 42 42 H 1.08996 * 113.61707 * 139.94168 * 23 7 6 43 43 H 1.09005 * 113.61393 * 270.84552 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9004 0.4284 -0.6944 6 6 4.2604 2.5352 -0.1220 7 6 5.2672 1.9994 0.9096 8 1 6.1073 1.4668 0.4639 9 7 5.6857 2.9993 1.8953 10 6 6.8607 2.8587 2.5404 11 8 7.5713 1.9044 2.3052 12 6 7.2910 3.8869 3.5547 13 8 8.5614 3.5194 4.0960 14 6 9.0963 4.3473 5.0315 15 6 10.3291 4.0538 5.5956 16 6 10.8677 4.8937 6.5513 17 6 12.2038 4.5720 7.1695 18 8 12.1310 3.3067 7.8298 19 14 12.6507 5.8925 8.4052 20 6 10.1845 6.0319 6.9370 21 6 8.9580 6.3298 6.3720 22 6 8.4122 5.4900 5.4209 23 6 4.1460 1.0732 1.4096 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.6736 3.3801 0.2385 30 1 4.6953 2.7111 -1.1059 31 1 5.1172 3.7623 2.0835 32 1 6.5545 3.9365 4.3567 33 1 7.3700 4.8615 3.0730 34 1 10.8653 3.1671 5.2914 35 1 12.9645 4.5316 6.3899 36 1 12.9578 3.0348 8.2513 37 1 12.7608 7.2081 7.7252 38 1 11.6212 5.9577 9.4735 39 1 10.6093 6.6896 7.6810 40 1 8.4260 7.2194 6.6752 41 1 7.4541 5.7228 4.9803 42 1 4.4883 0.0691 1.6600 43 1 3.5279 1.5177 2.1897 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:49:47 Heat of formation + Delta-G solvation = -91.573328 kcal Electronic energy + Delta-G solvation = -24261.762997 eV Core-core repulsion = 20468.235265 eV Total energy + Delta-G solvation = -3793.527732 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.72054 -41.07117 -39.87985 -38.91112 -38.18229 -37.31230 -34.81123 -32.69822 -31.85836 -30.18093 -28.91993 -27.00096 -26.81491 -26.57143 -23.86393 -23.75590 -22.31986 -21.66238 -20.65210 -19.24171 -18.45605 -18.29344 -17.82731 -17.51997 -17.47979 -17.22116 -16.86247 -16.81079 -16.02774 -15.90788 -15.75853 -15.60536 -15.24479 -14.81065 -14.64001 -14.35483 -14.08518 -13.85785 -13.66425 -13.47910 -13.25349 -13.23065 -12.98896 -12.48359 -12.45181 -12.26636 -12.18981 -12.10027 -11.85234 -11.69700 -11.44176 -11.03439 -10.60902 -10.43949 -10.17802 -9.98032 -9.43382 -4.93072 0.06317 0.21885 1.25185 1.35981 1.43815 1.65224 1.96132 2.48764 2.51595 2.81121 3.36592 3.39757 3.48085 3.57956 3.71658 3.75645 3.78034 3.84728 3.87088 3.94979 4.02436 4.14400 4.19331 4.29566 4.36740 4.38910 4.46983 4.51166 4.54903 4.58263 4.68046 4.74454 4.79193 4.84125 4.84267 4.97033 5.02866 5.07319 5.18220 5.18755 5.28711 5.47848 5.53582 6.16649 6.23106 6.41209 6.86988 7.07209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.070 3.930 4 C -0.108 4.108 5 H 0.091 0.909 6 C -0.116 4.116 7 C 0.117 3.883 8 H 0.092 0.908 9 N -0.697 5.697 10 C 0.512 3.488 11 O -0.574 6.574 12 C 0.036 3.964 13 O -0.319 6.319 14 C 0.120 3.880 15 C -0.145 4.145 16 C -0.052 4.052 17 C -0.091 4.091 18 O -0.566 6.566 19 Si 0.789 3.211 20 C -0.181 4.181 21 C -0.071 4.071 22 C -0.202 4.202 23 C -0.144 4.144 24 H 0.088 0.912 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.423 0.577 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.404 0.596 37 H -0.283 1.283 38 H -0.294 1.294 39 H 0.123 0.877 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.053 0.947 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 7.013 0.282 7.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.006 4.006 4 C -0.127 4.127 5 H 0.109 0.891 6 C -0.154 4.154 7 C 0.012 3.988 8 H 0.110 0.890 9 N -0.351 5.351 10 C 0.299 3.701 11 O -0.453 6.453 12 C -0.042 4.042 13 O -0.232 6.232 14 C 0.075 3.925 15 C -0.164 4.164 16 C -0.052 4.052 17 C -0.200 4.200 18 O -0.376 6.376 19 Si 0.694 3.306 20 C -0.199 4.199 21 C -0.089 4.089 22 C -0.220 4.220 23 C -0.183 4.183 24 H 0.107 0.893 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.261 0.739 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.255 0.745 37 H -0.210 1.210 38 H -0.222 1.222 39 H 0.140 0.860 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.072 0.928 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.565 6.752 0.180 7.637 hybrid contribution -0.786 -0.017 -0.441 0.902 sum -4.351 6.735 -0.261 8.022 Atomic orbital electron populations 1.22884 0.79749 1.03533 1.00872 1.87865 1.21195 1.29406 1.95612 1.22634 0.92419 0.84270 1.01316 1.22332 0.93470 0.99135 0.97768 0.89084 1.23286 0.95652 0.96928 0.99538 1.22494 0.95882 0.90489 0.89920 0.89001 1.45665 1.20097 1.28130 1.41165 1.20583 0.81566 0.86208 0.81783 1.90766 1.54806 1.33962 1.65749 1.22787 0.85367 0.98530 0.97500 1.86132 1.35430 1.48297 1.53368 1.19191 0.93289 0.90430 0.89614 1.20332 0.95162 1.01560 0.99333 1.19503 0.96071 0.94399 0.95245 1.25063 0.95686 0.95822 1.03431 1.86452 1.41477 1.35847 1.73828 0.94214 0.85863 0.73788 0.76781 1.21024 0.97581 0.98374 1.02892 1.21250 0.94021 0.99466 0.94125 1.21617 1.02905 0.95084 1.02383 1.23574 0.97310 0.99882 0.97536 0.89298 0.93136 0.93086 0.91875 0.91909 0.86637 0.89414 0.73873 0.85713 0.85357 0.85948 0.89140 0.74500 1.20997 1.22168 0.85997 0.82249 0.81488 0.92798 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 11.01 113.37 1.25 1.21 16 2 O -0.42 -1.64 10.70 -148.98 -1.59 -3.23 16 3 C 0.07 -0.15 5.78 71.98 0.42 0.27 16 4 C -0.11 0.22 4.01 -10.21 -0.04 0.18 16 5 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 6 C -0.12 0.76 7.39 31.12 0.23 0.99 16 7 C 0.12 -0.10 4.21 45.51 0.19 0.09 16 8 H 0.09 0.46 7.50 -2.39 -0.02 0.45 16 9 N -0.70 2.43 5.36 -440.03 -2.36 0.07 16 10 C 0.51 2.23 7.91 87.66 0.69 2.93 16 11 O -0.57 -9.61 16.12 16.00 0.26 -9.35 16 12 C 0.04 -0.05 5.22 71.24 0.37 0.32 16 13 O -0.32 -2.89 9.67 -73.33 -0.71 -3.59 16 14 C 0.12 0.90 6.69 22.51 0.15 1.05 16 15 C -0.15 -1.47 9.56 22.37 0.21 -1.26 16 16 C -0.05 -0.40 5.42 -19.88 -0.11 -0.51 16 17 C -0.09 -0.22 2.81 71.23 0.20 -0.02 16 18 O -0.57 -1.83 12.75 -148.98 -1.90 -3.73 16 19 Si 0.79 -0.96 29.79 68.60 2.04 1.08 16 20 C -0.18 -1.02 8.67 22.28 0.19 -0.83 16 21 C -0.07 -0.11 10.04 22.25 0.22 0.12 16 22 C -0.20 -0.20 9.04 22.36 0.20 0.00 16 23 C -0.14 0.03 7.45 31.18 0.23 0.26 16 24 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.05 -0.19 8.14 -2.38 -0.02 -0.20 16 27 H 0.06 -0.31 7.85 -2.38 -0.02 -0.33 16 28 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.12 -1.32 8.07 -2.39 -0.02 -1.34 16 30 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.42 -5.05 8.71 -92.71 -0.81 -5.86 16 32 H 0.13 -0.96 7.66 -2.39 -0.02 -0.98 16 33 H 0.13 -1.08 7.66 -2.39 -0.02 -1.10 16 34 H 0.12 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.09 -0.09 7.96 -2.39 -0.02 -0.11 16 36 H 0.40 -3.18 8.74 -74.06 -0.65 -3.83 16 37 H -0.28 -0.91 7.11 99.48 0.71 -0.20 16 38 H -0.29 -1.72 7.11 99.48 0.71 -1.01 16 39 H 0.12 0.52 4.87 -2.91 -0.01 0.50 16 40 H 0.16 -0.77 8.06 -2.91 -0.02 -0.79 16 41 H 0.17 -1.21 6.30 -2.91 -0.02 -1.23 16 42 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.10 -0.27 7.90 -2.38 -0.02 -0.29 16 Total: 0.00 -29.70 360.14 -0.23 -29.93 By element: Atomic # 1 Polarization: -15.58 SS G_CDS: -0.39 Total: -15.97 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 4.42 Total: 4.79 kcal Atomic # 7 Polarization: 2.43 SS G_CDS: -2.36 Total: 0.07 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -3.94 Total: -19.91 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: 2.04 Total: 1.08 kcal Total: -29.70 -0.23 -29.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.641 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds