Wall clock time and date at job start Sat Mar 6 2021 20:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00196 * 2 1 4 4 C 1.52997 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.90305 * 316.25104 * 4 3 2 6 6 C 1.53778 * 113.61789 * 87.50269 * 4 3 2 7 7 C 1.53781 * 87.08237 * 139.98447 * 6 4 3 8 8 H 1.08991 * 113.69045 * 89.12873 * 7 6 4 9 9 N 1.46504 * 113.60966 * 220.02075 * 7 6 4 10 10 C 1.34770 * 119.99792 * 252.49369 * 9 7 6 11 11 O 1.21287 * 120.00316 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99790 * 180.02562 * 10 9 7 13 13 O 1.42906 * 109.46775 * 180.02562 * 12 10 9 14 14 C 1.35998 * 116.99536 * 180.02562 * 13 12 10 15 15 C 1.39154 * 120.07027 * 180.02562 * 14 13 12 16 16 O 1.35992 * 120.07493 * 359.97109 * 15 14 13 17 17 C 1.42899 * 117.00142 * 179.97438 * 16 15 14 18 18 C 1.38564 * 119.85088 * 179.70036 * 15 14 13 19 19 C 1.38240 * 120.00327 * 0.52367 * 18 15 14 20 20 C 1.50699 * 119.92985 * 179.76891 * 19 18 15 21 21 O 1.42901 * 109.46830 * 299.72648 * 20 19 18 22 22 Si 1.86298 * 109.46950 * 179.73085 * 20 19 18 23 23 C 1.38258 * 120.14267 * 359.49893 * 19 18 15 24 24 C 1.38241 * 120.14553 * 0.22300 * 23 19 18 25 25 C 1.53779 * 113.61801 * 185.00307 * 4 3 2 26 26 H 1.08996 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47137 * 300.00148 * 1 2 3 28 28 H 1.09004 * 109.47009 * 59.99563 * 1 2 3 29 29 H 1.09002 * 109.47066 * 59.99925 * 3 2 1 30 30 H 1.09004 * 109.47330 * 300.00056 * 3 2 1 31 31 H 1.09005 * 113.61340 * 25.43263 * 6 4 3 32 32 H 1.09002 * 113.61677 * 254.53184 * 6 4 3 33 33 H 0.96995 * 119.99990 * 72.49955 * 9 7 6 34 34 H 1.09001 * 109.47376 * 60.00149 * 12 10 9 35 35 H 1.08990 * 109.46932 * 299.99999 * 12 10 9 36 36 H 1.08995 * 109.47531 * 300.00274 * 17 16 15 37 37 H 1.08998 * 109.46907 * 60.00490 * 17 16 15 38 38 H 1.09007 * 109.47004 * 180.02562 * 17 16 15 39 39 H 1.08000 * 120.00126 * 180.27617 * 18 15 14 40 40 H 1.08991 * 109.47351 * 59.72796 * 20 19 18 41 41 H 0.96708 * 114.00246 * 299.99864 * 21 20 19 42 42 H 1.48506 * 109.99834 * 180.02562 * 22 20 19 43 43 H 1.48502 * 110.00011 * 301.31529 * 22 20 19 44 44 H 1.07994 * 119.92574 * 180.25269 * 23 19 18 45 45 H 1.07997 * 119.99840 * 179.97438 * 24 23 19 46 46 H 1.09003 * 113.61636 * 105.46938 * 25 4 3 47 47 H 1.09004 * 113.68721 * 334.57804 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9013 0.4280 0.6934 6 6 4.1442 1.0751 -1.4085 7 6 5.2672 1.9995 -0.9094 8 1 6.1072 1.4668 -0.4638 9 7 5.6857 2.9993 -1.8951 10 6 6.8746 2.8752 -2.5176 11 8 7.5978 1.9356 -2.2623 12 6 7.3054 3.9041 -3.5311 13 8 8.5913 3.5547 -4.0474 14 6 9.1290 4.3862 -4.9796 15 6 10.3780 4.1067 -5.5257 16 8 11.0639 3.0018 -5.1280 17 6 12.3396 2.7779 -5.7317 18 6 10.9188 4.9536 -6.4798 19 6 10.2226 6.0791 -6.8792 20 6 10.8146 7.0019 -7.9131 21 8 12.0564 7.5211 -7.4329 22 14 9.6370 8.4087 -8.2369 23 6 8.9819 6.3571 -6.3362 24 6 8.4341 5.5132 -5.3882 25 6 4.2605 2.5352 0.1222 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.5256 1.5208 -2.1876 32 1 4.4848 0.0707 -1.6600 33 1 5.1073 3.7506 -2.0995 34 1 7.3584 4.8832 -3.0550 35 1 6.5830 3.9353 -4.3467 36 1 12.2183 2.6749 -6.8100 37 1 12.9954 3.6221 -5.5188 38 1 12.7780 1.8657 -5.3269 39 1 11.8860 4.7366 -6.9085 40 1 10.9847 6.4503 -8.8376 41 1 11.9805 8.0248 -6.6108 42 1 10.2091 9.3257 -9.2554 43 1 8.3312 7.8801 -8.7065 44 1 8.4393 7.2352 -6.6538 45 1 7.4649 5.7328 -4.9654 46 1 4.6950 2.7096 1.1065 47 1 3.6747 3.3811 -0.2378 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:49:58 Heat of formation + Delta-G solvation = -125.983529 kcal Electronic energy + Delta-G solvation = -28622.717719 eV Core-core repulsion = 24353.478037 eV Total energy + Delta-G solvation = -4269.239682 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.83855 -41.22585 -40.03410 -39.18994 -38.84973 -38.15735 -36.91532 -34.75119 -32.04888 -31.46733 -30.25973 -29.01441 -28.43978 -26.92149 -26.59822 -26.16364 -24.02296 -23.13152 -22.46621 -21.68973 -20.63507 -19.79086 -18.58036 -18.33619 -17.89930 -17.64669 -17.50690 -17.22689 -16.98789 -16.80971 -16.66572 -16.10286 -16.02672 -15.94235 -15.69145 -15.61596 -15.40373 -15.13891 -14.65876 -14.31051 -14.03124 -13.77292 -13.58795 -13.46595 -13.43829 -13.20626 -12.97411 -12.65085 -12.54582 -12.39938 -12.17489 -12.07977 -12.05938 -12.00535 -11.72998 -11.65637 -11.41030 -10.95875 -10.58412 -10.43593 -10.11744 -9.79039 -8.91374 -4.96308 0.16660 0.27667 1.34235 1.44133 1.50308 1.67393 2.00483 2.30478 2.56185 2.57298 2.84120 3.44325 3.49039 3.54565 3.62107 3.69550 3.79463 3.86823 3.90499 3.91308 4.04880 4.12978 4.13948 4.28231 4.29404 4.32269 4.36205 4.39583 4.49300 4.49800 4.53964 4.60734 4.63970 4.65252 4.71744 4.77931 4.82773 4.85882 5.00238 5.00672 5.06630 5.12243 5.23198 5.36942 5.53305 5.59867 5.96909 6.25434 6.42688 6.54928 6.77875 7.15555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.070 3.930 4 C -0.109 4.109 5 H 0.089 0.911 6 C -0.144 4.144 7 C 0.117 3.883 8 H 0.090 0.910 9 N -0.697 5.697 10 C 0.511 3.489 11 O -0.576 6.576 12 C 0.035 3.965 13 O -0.316 6.316 14 C 0.084 3.916 15 C 0.076 3.924 16 O -0.335 6.335 17 C 0.021 3.979 18 C -0.153 4.153 19 C -0.119 4.119 20 C -0.077 4.077 21 O -0.558 6.558 22 Si 0.789 3.211 23 C -0.110 4.110 24 C -0.159 4.159 25 C -0.116 4.116 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.423 0.577 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.103 0.897 41 H 0.395 0.605 42 H -0.304 1.304 43 H -0.278 1.278 44 H 0.160 0.840 45 H 0.177 0.823 46 H 0.086 0.914 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 8.341 1.546 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.006 4.006 4 C -0.128 4.128 5 H 0.108 0.892 6 C -0.183 4.183 7 C 0.012 3.988 8 H 0.108 0.892 9 N -0.351 5.351 10 C 0.297 3.703 11 O -0.455 6.455 12 C -0.043 4.043 13 O -0.229 6.229 14 C 0.039 3.961 15 C 0.031 3.969 16 O -0.250 6.250 17 C -0.074 4.074 18 C -0.171 4.171 19 C -0.120 4.120 20 C -0.186 4.186 21 O -0.366 6.366 22 Si 0.694 3.306 23 C -0.128 4.128 24 C -0.177 4.177 25 C -0.154 4.154 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.262 0.738 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.121 0.879 41 H 0.245 0.755 42 H -0.232 1.232 43 H -0.205 1.205 44 H 0.177 0.823 45 H 0.194 0.806 46 H 0.104 0.896 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.519 7.293 0.844 9.818 hybrid contribution 0.242 -0.605 -0.489 0.814 sum -6.277 6.688 0.355 9.179 Atomic orbital electron populations 1.22881 0.79768 1.03500 1.00882 1.87863 1.21181 1.29461 1.95614 1.22638 0.92399 0.84239 1.01344 1.22303 0.93486 0.99181 0.97810 0.89225 1.23547 0.97327 0.99852 0.97535 1.22464 0.95800 0.90538 0.89994 0.89163 1.45645 1.18797 1.28962 1.41661 1.20670 0.81646 0.86123 0.81839 1.90775 1.54696 1.34924 1.65055 1.22798 0.85040 0.98673 0.97784 1.86230 1.33987 1.48586 1.54117 1.18602 0.91989 0.92595 0.92954 1.18683 0.91538 0.89475 0.97246 1.86190 1.33272 1.41184 1.64305 1.23276 0.81887 1.03484 0.98719 1.20998 1.01826 0.95585 0.98735 1.20207 0.95715 0.96354 0.99681 1.25281 0.93634 1.02814 0.96902 1.86463 1.29733 1.73705 1.46679 0.93618 0.74283 0.77068 0.85602 1.21016 0.94703 1.00271 0.96767 1.21388 1.02152 0.93432 1.00704 1.23293 0.95668 0.96903 0.99527 0.89354 0.93100 0.93098 0.91938 0.91777 0.88257 0.92930 0.73815 0.85054 0.85615 0.91971 0.91618 0.87118 0.84237 0.87914 0.75454 1.23203 1.20487 0.82329 0.80556 0.89555 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 11.01 113.37 1.25 1.20 16 2 O -0.42 -1.53 10.70 -148.98 -1.59 -3.13 16 3 C 0.07 -0.17 5.78 71.98 0.42 0.24 16 4 C -0.11 0.24 4.01 -10.27 -0.04 0.20 16 5 H 0.09 0.07 8.14 -2.38 -0.02 0.05 16 6 C -0.14 0.08 7.43 31.12 0.23 0.31 16 7 C 0.12 -0.12 4.24 45.52 0.19 0.07 16 8 H 0.09 0.47 7.46 -2.39 -0.02 0.46 16 9 N -0.70 2.81 5.35 -440.04 -2.36 0.45 16 10 C 0.51 2.07 7.91 87.66 0.69 2.76 16 11 O -0.58 -9.87 16.10 15.98 0.26 -9.62 16 12 C 0.03 -0.08 5.22 71.24 0.37 0.29 16 13 O -0.32 -2.81 9.46 -67.11 -0.63 -3.44 16 14 C 0.08 0.48 6.70 22.57 0.15 0.63 16 15 C 0.08 0.64 6.70 22.57 0.15 0.79 16 16 O -0.34 -3.94 10.28 -79.59 -0.82 -4.76 16 17 C 0.02 0.07 9.81 113.37 1.11 1.18 16 18 C -0.15 -0.64 8.60 22.35 0.19 -0.45 16 19 C -0.12 -0.02 5.39 -19.86 -0.11 -0.13 16 20 C -0.08 0.09 2.82 71.24 0.20 0.29 16 21 O -0.56 0.08 12.77 -148.98 -1.90 -1.82 16 22 Si 0.79 -3.41 29.78 68.60 2.04 -1.37 16 23 C -0.11 0.38 8.66 22.28 0.19 0.57 16 24 C -0.16 0.44 9.04 22.35 0.20 0.64 16 25 C -0.12 0.79 7.39 31.12 0.23 1.02 16 26 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.05 -0.20 8.14 -2.38 -0.02 -0.22 16 28 H 0.05 -0.20 8.14 -2.38 -0.02 -0.22 16 29 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.06 -0.35 7.84 -2.39 -0.02 -0.37 16 31 H 0.10 -0.34 7.90 -2.38 -0.02 -0.36 16 32 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.42 -5.43 8.73 -92.71 -0.81 -6.24 16 34 H 0.13 -1.35 7.66 -2.39 -0.02 -1.37 16 35 H 0.13 -1.18 7.67 -2.39 -0.02 -1.20 16 36 H 0.06 0.06 7.65 -2.39 -0.02 0.04 16 37 H 0.07 0.05 7.67 -2.39 -0.02 0.03 16 38 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 39 H 0.14 0.42 6.30 -2.91 -0.02 0.40 16 40 H 0.10 0.05 7.96 -2.39 -0.02 0.03 16 41 H 0.40 -3.26 8.70 -74.05 -0.64 -3.90 16 42 H -0.30 -1.17 7.11 99.48 0.71 -0.46 16 43 H -0.28 0.21 7.11 99.48 0.71 0.92 16 44 H 0.16 -1.48 4.87 -2.91 -0.01 -1.49 16 45 H 0.18 -1.99 6.30 -2.91 -0.02 -2.01 16 46 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 47 H 0.12 -1.40 8.08 -2.38 -0.02 -1.41 16 Total: 0.00 -32.34 389.29 0.02 -32.32 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: -0.41 Total: -18.25 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.44 Total: 9.62 kcal Atomic # 7 Polarization: 2.81 SS G_CDS: -2.36 Total: 0.45 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -4.69 Total: -22.77 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.04 Total: -1.37 kcal Total: -32.34 0.02 -32.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.665 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds