Wall clock time and date at job start Sat Mar 6 2021 20:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99940 * 2 1 4 4 C 1.53000 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.84482 * 316.19571 * 4 3 2 6 6 C 1.53781 * 113.69306 * 87.46025 * 4 3 2 7 7 C 1.53784 * 87.07912 * 139.99142 * 6 4 3 8 8 H 1.09004 * 113.68323 * 89.13035 * 7 6 4 9 9 N 1.46499 * 113.61632 * 220.01946 * 7 6 4 10 10 C 1.34779 * 120.00213 * 252.50410 * 9 7 6 11 11 O 1.21555 * 119.99595 * 359.97438 * 10 9 7 12 12 C 1.47839 * 120.00175 * 179.97438 * 10 9 7 13 13 C 1.39561 * 120.14212 * 353.83146 * 12 10 9 14 14 C 1.37981 * 119.84976 * 179.97438 * 13 12 10 15 15 C 1.50697 * 119.92425 * 180.02562 * 14 13 12 16 16 O 1.42898 * 109.47059 * 254.99602 * 15 14 13 17 17 Si 1.86300 * 109.47291 * 14.99717 * 15 14 13 18 18 C 1.38335 * 120.14786 * 359.97438 * 14 13 12 19 19 C 1.50693 * 119.85706 * 180.02562 * 18 14 13 20 20 C 1.38385 * 120.28968 * 0.02562 * 18 14 13 21 21 C 1.37931 * 120.14923 * 359.97438 * 20 18 14 22 22 C 1.50702 * 120.07920 * 180.27785 * 21 20 18 23 23 C 1.53777 * 113.61539 * 185.00101 * 4 3 2 24 24 H 1.09000 * 109.47269 * 299.99934 * 1 2 3 25 25 H 1.08995 * 109.46947 * 60.00299 * 1 2 3 26 26 H 1.09004 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46903 * 59.99954 * 3 2 1 28 28 H 1.09001 * 109.46984 * 300.00206 * 3 2 1 29 29 H 1.09006 * 113.61133 * 25.44767 * 6 4 3 30 30 H 1.08999 * 113.61501 * 254.54404 * 6 4 3 31 31 H 0.96995 * 120.00054 * 72.49837 * 9 7 6 32 32 H 1.07992 * 120.07620 * 0.02562 * 13 12 10 33 33 H 1.09012 * 109.46913 * 134.99893 * 15 14 13 34 34 H 0.96689 * 114.00135 * 60.00187 * 16 15 14 35 35 H 1.48502 * 109.99742 * 179.97438 * 17 15 14 36 36 H 1.48497 * 109.99999 * 301.31682 * 17 15 14 37 37 H 1.09000 * 109.47070 * 90.00279 * 19 18 14 38 38 H 1.08998 * 109.47544 * 210.00153 * 19 18 14 39 39 H 1.09001 * 109.47151 * 330.00906 * 19 18 14 40 40 H 1.08005 * 119.92809 * 179.97438 * 20 18 14 41 41 H 1.08998 * 109.47062 * 262.90927 * 22 21 20 42 42 H 1.09001 * 109.46753 * 22.90302 * 22 21 20 43 43 H 1.08996 * 109.47240 * 142.90288 * 22 21 20 44 44 H 1.09005 * 113.61675 * 105.38267 * 23 4 3 45 45 H 1.08998 * 113.61429 * 334.48035 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9004 0.4285 0.6944 6 6 4.1460 1.0740 -1.4077 7 6 5.2684 1.9987 -0.9078 8 1 6.1079 1.4662 -0.4607 9 7 5.6884 2.9978 -1.8936 10 6 6.8780 2.8732 -2.5146 11 8 7.6027 1.9321 -2.2564 12 6 7.3016 3.8811 -3.5098 13 6 6.4215 4.8901 -3.9035 14 6 6.8233 5.8281 -4.8323 15 6 5.8745 6.9187 -5.2583 16 8 5.3752 6.6317 -6.5660 17 14 4.4534 7.0096 -4.0570 18 6 8.0954 5.7701 -5.3727 19 6 8.5276 6.7981 -6.3862 20 6 8.9729 4.7722 -4.9865 21 6 8.5840 3.8284 -4.0589 22 6 9.5430 2.7460 -3.6349 23 6 4.2604 2.5353 0.1221 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.5284 1.5192 -2.1879 30 1 4.4868 0.0694 -1.6580 31 1 5.1102 3.7490 -2.0993 32 1 5.4285 4.9373 -3.4815 33 1 6.4007 7.8733 -5.2716 34 1 4.8946 5.7950 -6.6287 35 1 3.5108 8.0819 -4.4657 36 1 3.7472 5.7043 -4.0060 37 1 8.9809 7.6461 -5.8729 38 1 9.2544 6.3545 -7.0666 39 1 7.6600 7.1376 -6.9521 40 1 9.9647 4.7322 -5.4124 41 1 9.3438 1.8396 -4.2066 42 1 10.5659 3.0743 -3.8192 43 1 9.4131 2.5413 -2.5722 44 1 4.6937 2.7104 1.1069 45 1 3.6742 3.3800 -0.2398 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_9599494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:22 Heat of formation + Delta-G solvation = -61.492911 kcal Electronic energy + Delta-G solvation = -25369.939773 eV Core-core repulsion = 21740.860999 eV Total energy + Delta-G solvation = -3629.078774 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.166 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79364 -40.67480 -39.56391 -38.25637 -37.69146 -35.06386 -34.39722 -33.13438 -29.95485 -29.16057 -28.44576 -26.93968 -26.60900 -25.62868 -24.05082 -23.50310 -21.92413 -21.34943 -20.48187 -19.04474 -17.83270 -17.59671 -17.32249 -16.88386 -16.74201 -16.39484 -16.30116 -16.27917 -15.80993 -15.62011 -15.52269 -14.91826 -14.64225 -14.56788 -14.12359 -13.99831 -13.82661 -13.46979 -13.46079 -13.20286 -13.07289 -12.95976 -12.77406 -12.70924 -12.53794 -12.39146 -12.05669 -11.95387 -11.78549 -11.64954 -11.40222 -10.71238 -10.59662 -10.57752 -10.14344 -9.90399 -9.60380 -4.94573 -0.25430 0.16557 1.28132 1.53695 1.71586 1.94708 2.07089 2.62956 2.81357 3.40508 3.43899 3.48636 3.60244 3.62535 3.69070 3.80581 3.82332 3.90256 4.14835 4.22938 4.31880 4.37898 4.47483 4.50091 4.53454 4.55014 4.57433 4.59219 4.68896 4.70163 4.75981 4.78068 4.80710 4.82329 4.83944 4.91640 4.98844 5.04183 5.06982 5.16124 5.23167 5.30020 5.48699 5.50596 5.56681 5.80805 6.23191 6.44985 6.47468 7.13698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.069 3.931 4 C -0.106 4.106 5 H 0.095 0.905 6 C -0.145 4.145 7 C 0.118 3.882 8 H 0.101 0.899 9 N -0.706 5.706 10 C 0.556 3.444 11 O -0.564 6.564 12 C -0.159 4.159 13 C -0.073 4.073 14 C -0.134 4.134 15 C -0.081 4.081 16 O -0.543 6.543 17 Si 0.756 3.244 18 C -0.029 4.029 19 C -0.127 4.127 20 C -0.137 4.137 21 C -0.025 4.025 22 C -0.118 4.118 23 C -0.121 4.121 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.411 0.589 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.385 0.615 35 H -0.300 1.300 36 H -0.265 1.265 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 4.976 1.794 5.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.007 4.007 4 C -0.125 4.125 5 H 0.113 0.887 6 C -0.184 4.184 7 C 0.014 3.986 8 H 0.119 0.881 9 N -0.357 5.357 10 C 0.345 3.655 11 O -0.444 6.444 12 C -0.162 4.162 13 C -0.091 4.091 14 C -0.134 4.134 15 C -0.189 4.189 16 O -0.351 6.351 17 Si 0.661 3.339 18 C -0.029 4.029 19 C -0.183 4.183 20 C -0.155 4.155 21 C -0.026 4.026 22 C -0.174 4.174 23 C -0.159 4.159 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.249 0.751 32 H 0.163 0.837 33 H 0.144 0.856 34 H 0.234 0.766 35 H -0.228 1.228 36 H -0.191 1.191 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.163 0.837 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.518 4.643 1.971 5.638 hybrid contribution -0.584 -0.533 -1.179 1.420 sum -3.102 4.110 0.792 5.210 Atomic orbital electron populations 1.22880 0.79840 1.03524 1.00800 1.87863 1.21097 1.29303 1.95596 1.22640 0.92646 0.84292 1.01171 1.22296 0.93252 0.99168 0.97755 0.88701 1.23537 0.97435 1.00028 0.97417 1.22517 0.96036 0.90306 0.89769 0.88081 1.45846 1.19176 1.28673 1.42014 1.18515 0.81363 0.84903 0.80691 1.90737 1.53677 1.34174 1.65851 1.19671 0.96105 0.98582 1.01854 1.21308 0.99153 0.92685 0.95974 1.20089 0.95860 0.98462 0.99019 1.25188 1.03365 0.99093 0.91284 1.86578 1.74727 1.45195 1.28611 0.94234 0.75887 0.78104 0.85716 1.20233 0.92560 0.95134 0.94982 1.21008 1.02752 0.97402 0.97123 1.21198 1.01078 0.94796 0.98391 1.20218 0.93424 0.95564 0.93407 1.21010 0.97207 0.95975 1.03209 1.23319 0.95847 0.96825 0.99867 0.93057 0.93335 0.89241 0.91821 0.92299 0.89170 0.92440 0.75134 0.83668 0.85570 0.76550 1.22821 1.19133 0.89288 0.90684 0.90402 0.83748 0.91524 0.90703 0.90342 0.89048 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 11.01 113.37 1.25 1.22 16 2 O -0.42 -1.68 10.70 -148.98 -1.59 -3.27 16 3 C 0.07 -0.11 5.78 71.98 0.42 0.31 16 4 C -0.11 0.19 4.01 -10.27 -0.04 0.15 16 5 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 6 C -0.15 -0.04 7.43 31.12 0.23 0.19 16 7 C 0.12 -0.04 4.24 45.52 0.19 0.15 16 8 H 0.10 0.39 7.46 -2.38 -0.02 0.37 16 9 N -0.71 0.43 5.30 -442.90 -2.35 -1.92 16 10 C 0.56 3.18 7.70 86.78 0.67 3.85 16 11 O -0.56 -7.17 12.96 -3.89 -0.05 -7.22 16 12 C -0.16 -0.53 5.87 -20.09 -0.12 -0.65 16 13 C -0.07 0.12 8.13 22.53 0.18 0.30 16 14 C -0.13 0.21 5.25 -19.90 -0.10 0.10 16 15 C -0.08 0.28 1.88 71.23 0.13 0.41 16 16 O -0.54 0.27 11.92 -148.98 -1.78 -1.50 16 17 Si 0.76 -4.21 30.24 68.60 2.07 -2.14 16 18 C -0.03 0.00 5.89 -19.81 -0.12 -0.11 16 19 C -0.13 0.36 9.31 71.23 0.66 1.02 16 20 C -0.14 -0.17 9.31 22.23 0.21 0.04 16 21 C -0.03 -0.11 5.91 -19.61 -0.12 -0.22 16 22 C -0.12 -0.61 8.71 71.24 0.62 0.01 16 23 C -0.12 0.70 7.39 31.12 0.23 0.93 16 24 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.06 -0.26 8.14 -2.39 -0.02 -0.27 16 28 H 0.06 -0.22 7.85 -2.39 -0.02 -0.23 16 29 H 0.09 -0.09 7.90 -2.38 -0.02 -0.11 16 30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.41 -2.62 6.80 -92.71 -0.63 -3.25 16 32 H 0.15 -0.94 3.25 -2.91 -0.01 -0.95 16 33 H 0.13 -0.63 7.37 -2.38 -0.02 -0.64 16 34 H 0.39 -2.13 8.70 -74.06 -0.64 -2.77 16 35 H -0.30 -0.77 7.11 99.48 0.71 -0.06 16 36 H -0.27 1.18 6.68 99.48 0.66 1.84 16 37 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.07 -0.27 8.08 -2.39 -0.02 -0.29 16 39 H 0.08 -0.09 6.18 -2.39 -0.01 -0.10 16 40 H 0.14 -0.29 8.05 -2.91 -0.02 -0.32 16 41 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 42 H 0.07 0.10 8.04 -2.39 -0.02 0.08 16 43 H 0.08 0.71 5.89 -2.39 -0.01 0.70 16 44 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 45 H 0.11 -1.08 8.08 -2.39 -0.02 -1.10 16 Total: 0.00 -16.83 359.68 0.33 -16.50 By element: Atomic # 1 Polarization: -7.87 SS G_CDS: -0.27 Total: -8.14 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 4.30 Total: 7.69 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -2.35 Total: -1.92 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -3.42 Total: -11.99 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.07 Total: -2.14 kcal Total: -16.83 0.33 -16.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_9599494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.997 kcal (2) G-P(sol) polarization free energy of solvation -16.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds