Wall clock time and date at job start Sat Mar 6 2021 20:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99766 * 2 1 4 4 C 1.53000 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.84949 * 45.33633 * 4 3 2 6 6 C 1.53781 * 113.61707 * 176.53192 * 4 3 2 7 7 C 1.53777 * 87.08336 * 140.06298 * 6 4 3 8 8 H 1.09008 * 113.61204 * 89.11878 * 7 6 4 9 9 N 1.46492 * 113.61596 * 219.93501 * 7 6 4 10 10 C 1.34774 * 120.00245 * 205.00267 * 9 7 6 11 11 O 1.21287 * 119.99850 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00455 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47399 * 179.97438 * 12 10 9 14 14 C 1.36827 * 125.06330 * 264.69984 * 13 12 10 15 15 C 1.34245 * 109.93531 * 179.81418 * 14 13 12 16 16 C 1.50697 * 126.49804 * 180.13015 * 15 14 13 17 17 O 1.42903 * 109.46991 * 105.35653 * 16 15 14 18 18 Si 1.86305 * 109.47478 * 345.35966 * 16 15 14 19 19 C 1.46486 * 107.00051 * 0.43160 * 15 14 13 20 20 C 1.39591 * 134.03557 * 179.76199 * 19 15 14 21 21 C 1.36665 * 119.76370 * 180.02562 * 20 19 15 22 22 C 1.38793 * 120.52786 * 359.96160 * 21 20 19 23 23 C 1.37784 * 120.66416 * 359.97438 * 22 21 20 24 24 C 1.37699 * 125.05847 * 85.00283 * 13 12 10 25 25 C 1.53775 * 87.07992 * 334.56762 * 7 6 4 26 26 H 1.08996 * 109.47289 * 60.00008 * 1 2 3 27 27 H 1.09007 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47132 * 299.99594 * 1 2 3 29 29 H 1.09001 * 109.46793 * 60.00463 * 3 2 1 30 30 H 1.08992 * 109.47352 * 300.00400 * 3 2 1 31 31 H 1.08997 * 113.61673 * 254.61847 * 6 4 3 32 32 H 1.09005 * 113.61396 * 25.51675 * 6 4 3 33 33 H 0.97005 * 120.00166 * 24.99923 * 9 7 6 34 34 H 1.09005 * 109.47006 * 300.00170 * 12 10 9 35 35 H 1.09004 * 109.46891 * 59.99671 * 12 10 9 36 36 H 1.07992 * 125.03530 * 359.97429 * 14 13 12 37 37 H 1.09000 * 109.47383 * 225.35676 * 16 15 14 38 38 H 0.96700 * 113.99984 * 300.00195 * 17 16 15 39 39 H 1.48493 * 110.00239 * 179.97438 * 18 16 15 40 40 H 1.48504 * 109.99553 * 301.31864 * 18 16 15 41 41 H 1.07996 * 120.11727 * 359.97438 * 20 19 15 42 42 H 1.07999 * 119.73286 * 179.97438 * 21 20 19 43 43 H 1.07994 * 119.66238 * 180.02562 * 22 21 20 44 44 H 1.08010 * 120.10725 * 179.97438 * 23 22 21 45 45 H 1.08993 * 113.61636 * 270.87622 * 25 7 6 46 46 H 1.09008 * 113.61006 * 139.97865 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9013 0.4475 -0.7154 6 6 4.2605 2.5381 -0.0859 7 6 5.2672 1.9739 0.9305 8 1 6.1066 1.4525 0.4703 9 7 5.6872 2.9466 1.9422 10 6 6.8763 2.8047 2.5607 11 8 7.5987 1.8720 2.2793 12 6 7.3087 3.8056 3.6010 13 7 8.6269 3.4321 4.1199 14 6 8.8463 2.6994 5.2545 15 6 10.1647 2.5321 5.4434 16 6 10.8201 1.7828 6.5748 17 8 11.3102 0.5291 6.0950 18 14 9.5737 1.4857 7.9273 19 6 10.8458 3.2221 4.3454 20 6 12.1851 3.4074 3.9980 21 6 12.5027 4.1230 2.8778 22 6 11.5041 4.6668 2.0819 23 6 10.1759 4.4950 2.4056 24 6 9.8297 3.7711 3.5416 25 6 4.1441 1.0362 1.4037 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8464 -0.8899 31 1 4.6950 2.7398 -1.0650 32 1 3.6738 3.3728 0.2979 33 1 5.1096 3.6928 2.1670 34 1 7.3625 4.7971 3.1511 35 1 6.5867 3.8159 4.4176 36 1 8.0732 2.3109 5.9007 37 1 11.6495 2.3708 6.9678 38 1 10.6250 -0.0474 5.7300 39 1 10.2075 0.7469 9.0487 40 1 9.0329 2.7807 8.4129 41 1 12.9674 2.9874 4.6127 42 1 13.5390 4.2664 2.6098 43 1 11.7709 5.2295 1.1996 44 1 9.4061 4.9224 1.7800 45 1 3.5256 1.4601 2.1948 46 1 4.4847 0.0251 1.6273 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:25 Heat of formation + Delta-G solvation = -15.903781 kcal Electronic energy + Delta-G solvation = -27880.485429 eV Core-core repulsion = 23931.505356 eV Total energy + Delta-G solvation = -3948.980073 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.52799 -41.14375 -39.72228 -38.24682 -38.06558 -37.56907 -34.73232 -33.96852 -31.49500 -30.24248 -29.86840 -28.72443 -26.94550 -26.60193 -25.77991 -23.95970 -23.39590 -22.49869 -21.64475 -20.79938 -20.50525 -18.59460 -18.36589 -17.84892 -17.50705 -17.26848 -16.97719 -16.79179 -16.43561 -16.27910 -16.10663 -15.81118 -15.73365 -15.33264 -15.16412 -14.83422 -14.71100 -14.36200 -14.07585 -14.04375 -13.65043 -13.43139 -13.22834 -13.18789 -12.91978 -12.72595 -12.57281 -12.38901 -12.23828 -12.12804 -12.05769 -11.81224 -11.64705 -11.39235 -11.07326 -10.58473 -10.54222 -10.30349 -10.06844 -9.16245 -8.62710 -4.99464 0.13601 0.62616 1.36805 1.42127 1.48750 1.69010 1.71598 1.99927 2.24795 2.82994 2.93976 3.46673 3.57918 3.60819 3.68372 3.70307 3.76226 3.82032 3.89245 3.92200 4.05737 4.17348 4.21068 4.29505 4.33368 4.39457 4.47429 4.49891 4.55065 4.55607 4.60886 4.71110 4.72912 4.77884 4.79317 4.83316 4.86780 4.88065 5.03053 5.07807 5.12559 5.26162 5.49545 5.56668 5.64955 5.72673 5.74825 6.20085 6.24055 6.26004 6.52533 6.81593 7.18925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.070 3.930 4 C -0.110 4.110 5 H 0.087 0.913 6 C -0.120 4.120 7 C 0.120 3.880 8 H 0.088 0.912 9 N -0.700 5.700 10 C 0.492 3.508 11 O -0.572 6.572 12 C 0.087 3.913 13 N -0.466 5.466 14 C 0.080 3.920 15 C -0.226 4.226 16 C -0.047 4.047 17 O -0.564 6.564 18 Si 0.794 3.206 19 C -0.118 4.118 20 C -0.092 4.092 21 C -0.154 4.154 22 C -0.109 4.109 23 C -0.133 4.133 24 C 0.090 3.910 25 C -0.139 4.139 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.421 0.579 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.209 0.791 37 H 0.092 0.908 38 H 0.390 0.610 39 H -0.301 1.301 40 H -0.273 1.273 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.146 0.854 44 H 0.134 0.866 45 H 0.100 0.900 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 5.265 -0.900 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.006 4.006 4 C -0.129 4.129 5 H 0.105 0.895 6 C -0.158 4.158 7 C 0.015 3.985 8 H 0.106 0.894 9 N -0.353 5.353 10 C 0.278 3.722 11 O -0.450 6.450 12 C -0.037 4.037 13 N -0.149 5.149 14 C -0.046 4.046 15 C -0.233 4.233 16 C -0.156 4.156 17 O -0.372 6.372 18 Si 0.698 3.302 19 C -0.123 4.123 20 C -0.110 4.110 21 C -0.173 4.173 22 C -0.128 4.128 23 C -0.153 4.153 24 C -0.015 4.015 25 C -0.177 4.177 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.260 0.740 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.225 0.775 37 H 0.109 0.891 38 H 0.239 0.761 39 H -0.229 1.229 40 H -0.199 1.199 41 H 0.133 0.867 42 H 0.153 0.847 43 H 0.163 0.837 44 H 0.152 0.848 45 H 0.118 0.882 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.922 4.920 -0.186 11.076 hybrid contribution 0.510 0.489 -0.404 0.814 sum -9.412 5.409 -0.590 10.871 Atomic orbital electron populations 1.22880 0.79805 1.03504 1.00840 1.87864 1.21121 1.29372 1.95603 1.22628 0.92516 0.84262 1.01229 1.22303 0.93391 0.99004 0.98235 0.89467 1.23295 0.95968 0.96809 0.99683 1.22369 0.95588 0.90965 0.89603 0.89432 1.45785 1.19280 1.30009 1.40202 1.21464 0.81499 0.86489 0.82792 1.90807 1.54466 1.34575 1.65139 1.22008 0.83742 0.98779 0.99180 1.43449 1.04198 1.45963 1.21266 1.22080 0.96871 0.95965 0.89662 1.20801 0.93106 1.08913 1.00505 1.24706 1.04878 0.85149 1.00891 1.86439 1.39937 1.27639 1.83175 0.93969 0.81510 0.80542 0.74215 1.19384 0.93303 1.02202 0.97372 1.20442 0.94457 0.98615 0.97512 1.20912 1.00412 1.00208 0.95778 1.21127 0.91677 0.99852 1.00136 1.20259 0.97401 1.01956 0.95722 1.18399 0.85269 1.01154 0.96699 1.23490 0.97160 0.99801 0.97292 0.93278 0.89324 0.93019 0.91693 0.92305 0.90018 0.86743 0.74021 0.83974 0.81677 0.77486 0.89090 0.76053 1.22895 1.19933 0.86671 0.84684 0.83656 0.84791 0.88165 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 11.01 113.37 1.25 1.18 16 2 O -0.42 -1.01 10.70 -148.98 -1.59 -2.60 16 3 C 0.07 -0.25 5.77 71.98 0.42 0.16 16 4 C -0.11 0.41 4.01 -10.27 -0.04 0.37 16 5 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 6 C -0.12 0.97 7.39 31.12 0.23 1.20 16 7 C 0.12 -0.45 4.24 45.52 0.19 -0.26 16 8 H 0.09 0.25 7.46 -2.38 -0.02 0.24 16 9 N -0.70 5.42 5.36 -440.05 -2.36 3.07 16 10 C 0.49 -0.84 7.90 87.66 0.69 -0.15 16 11 O -0.57 -5.96 16.02 -3.05 -0.05 -6.01 16 12 C 0.09 -0.68 6.48 85.63 0.56 -0.13 16 13 N -0.47 -0.72 2.27 -519.98 -1.18 -1.90 16 14 C 0.08 0.06 9.89 83.00 0.82 0.88 16 15 C -0.23 -1.42 5.58 -18.63 -0.10 -1.53 16 16 C -0.05 -0.23 3.06 71.23 0.22 -0.01 16 17 O -0.56 -4.02 12.88 -148.98 -1.92 -5.94 16 18 Si 0.79 -0.72 30.75 68.60 2.11 1.39 16 19 C -0.12 -1.29 6.35 -20.20 -0.13 -1.42 16 20 C -0.09 -1.00 10.05 22.23 0.22 -0.78 16 21 C -0.15 -1.20 9.97 22.03 0.22 -0.98 16 22 C -0.11 -0.62 10.01 22.30 0.22 -0.39 16 23 C -0.13 -0.77 9.99 22.36 0.22 -0.54 16 24 C 0.09 0.70 6.80 39.03 0.27 0.97 16 25 C -0.14 0.46 7.43 31.12 0.23 0.69 16 26 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.09 -0.32 8.14 -2.38 -0.02 -0.34 16 28 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.06 -0.44 7.88 -2.39 -0.02 -0.46 16 30 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.11 -1.47 8.08 -2.38 -0.02 -1.49 16 33 H 0.42 -6.58 8.73 -92.70 -0.81 -7.39 16 34 H 0.14 -1.80 8.14 -2.38 -0.02 -1.82 16 35 H 0.17 -2.71 8.12 -2.38 -0.02 -2.72 16 36 H 0.21 -1.71 6.34 -2.91 -0.02 -1.73 16 37 H 0.09 0.67 7.96 -2.39 -0.02 0.65 16 38 H 0.39 -0.10 8.70 -74.06 -0.64 -0.74 16 39 H -0.30 -2.04 7.11 99.48 0.71 -1.33 16 40 H -0.27 -0.55 7.11 99.48 0.71 0.16 16 41 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.14 0.50 8.06 -2.91 -0.02 0.48 16 43 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 44 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 45 H 0.10 -0.63 7.92 -2.39 -0.02 -0.64 16 46 H 0.05 0.08 8.14 -2.38 -0.02 0.06 16 Total: 0.00 -30.19 386.68 0.08 -30.12 By element: Atomic # 1 Polarization: -16.95 SS G_CDS: -0.42 Total: -17.37 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.49 Total: -0.76 kcal Atomic # 7 Polarization: 4.71 SS G_CDS: -3.54 Total: 1.17 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -3.56 Total: -14.55 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.11 Total: 1.39 kcal Total: -30.19 0.08 -30.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.211 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds