Wall clock time and date at job start Sat Mar 6 2021 20:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 H 1.08992 * 112.85173 * 43.80095 * 4 3 2 6 6 C 1.53787 * 113.61228 * 175.00079 * 4 3 2 7 7 C 1.53776 * 87.07971 * 139.97805 * 6 4 3 8 8 H 1.09004 * 113.61682 * 89.11771 * 7 6 4 9 9 N 1.46507 * 113.61558 * 220.01556 * 7 6 4 10 10 C 1.34766 * 120.00093 * 205.00202 * 9 7 6 11 11 O 1.21626 * 120.00460 * 359.97438 * 10 9 7 12 12 C 1.47265 * 119.99731 * 179.97438 * 10 9 7 13 13 C 1.36775 * 126.93998 * 179.71114 * 12 10 9 14 14 C 1.50703 * 125.80299 * 359.97438 * 13 12 10 15 15 N 1.34659 * 108.39474 * 179.83836 * 13 12 10 16 16 C 1.36449 * 110.29622 * 0.44212 * 15 13 12 17 17 C 1.50703 * 125.57091 * 179.75298 * 16 15 13 18 18 O 1.42900 * 109.47251 * 244.97721 * 17 16 15 19 19 Si 1.86304 * 109.46978 * 4.97333 * 17 16 15 20 20 C 1.34478 * 108.86006 * 359.72893 * 16 15 13 21 21 C 1.53781 * 87.08649 * 334.56685 * 7 6 4 22 22 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 24 24 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 25 25 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 26 26 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 27 27 H 1.08999 * 113.61008 * 254.52793 * 6 4 3 28 28 H 1.09001 * 113.61614 * 25.34468 * 6 4 3 29 29 H 0.97002 * 119.99477 * 25.00218 * 9 7 6 30 30 H 1.09004 * 109.46561 * 90.00089 * 14 13 12 31 31 H 1.08997 * 109.46683 * 209.99966 * 14 13 12 32 32 H 1.09000 * 109.46858 * 330.00336 * 14 13 12 33 33 H 0.96999 * 124.85017 * 180.15421 * 15 13 12 34 34 H 1.08993 * 109.47171 * 124.97409 * 17 16 15 35 35 H 0.96705 * 113.99616 * 59.99503 * 18 17 16 36 36 H 1.48498 * 109.99943 * 180.02562 * 19 17 16 37 37 H 1.48497 * 110.00343 * 301.31924 * 19 17 16 38 38 H 1.07999 * 126.84119 * 179.97438 * 20 16 15 39 39 H 1.08998 * 113.61029 * 270.89062 * 21 7 6 40 40 H 1.08997 * 113.61702 * 139.98220 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8998 0.4288 -0.6961 6 6 4.2602 2.5355 -0.1235 7 6 5.2677 1.9993 0.9072 8 1 6.1068 1.4656 0.4608 9 7 5.6871 2.9989 1.8928 10 6 6.8764 2.8746 2.5144 11 8 7.6014 1.9325 2.2575 12 6 7.2981 3.8797 3.5047 13 6 8.4643 3.8907 4.2193 14 6 9.5614 2.8612 4.1321 15 7 8.4668 4.9794 5.0118 16 6 7.3142 5.6900 4.8434 17 6 6.9568 6.9643 5.5642 18 8 5.8182 6.7371 6.3973 19 14 8.3961 7.5082 6.6147 20 6 6.5496 5.0678 3.9288 21 6 4.1452 1.0747 1.4069 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6885 1.8465 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 4.6940 2.7102 -1.1081 28 1 3.6731 3.3804 0.2364 29 1 5.1087 3.7501 2.0980 30 1 10.2775 3.1576 3.3656 31 1 10.0683 2.7882 5.0942 32 1 9.1318 1.8935 3.8732 33 1 9.1835 5.2213 5.6189 34 1 6.7248 7.7410 4.8356 35 1 5.9532 6.0565 7.0708 36 1 8.0561 8.7636 7.3313 37 1 8.7428 6.4446 7.5912 38 1 5.5776 5.3803 3.5767 39 1 3.5272 1.5201 2.1864 40 1 4.4860 0.0702 1.6577 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12906260_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:29 Heat of formation + Delta-G solvation = -46.738455 kcal Electronic energy + Delta-G solvation = -21826.337714 eV Core-core repulsion = 18416.236589 eV Total energy + Delta-G solvation = -3410.101125 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.48792 -40.86975 -39.31385 -38.11782 -37.89643 -34.44561 -32.81440 -32.08625 -29.63918 -28.94395 -26.99108 -26.61733 -25.67005 -24.09572 -22.37879 -21.51063 -21.08451 -20.07661 -18.79635 -17.79052 -17.56293 -17.09249 -16.92358 -16.72660 -16.64203 -15.88429 -15.78624 -15.66997 -15.26543 -14.92016 -14.56584 -14.41595 -14.00559 -13.90317 -13.81548 -13.47059 -13.40791 -13.14251 -12.91724 -12.80589 -12.62478 -12.33878 -12.20498 -12.00192 -11.61556 -11.33330 -10.91478 -10.57010 -10.51729 -9.96790 -9.75324 -9.15086 -5.24689 0.79357 0.98400 1.24445 1.28702 1.69211 1.99629 2.47083 2.67238 2.83877 3.18292 3.51742 3.58254 3.63727 3.83219 3.89375 3.94065 4.13176 4.19908 4.31596 4.37208 4.38759 4.44223 4.49317 4.55520 4.56723 4.69989 4.70500 4.75818 4.77823 4.80182 4.86646 5.02236 5.09053 5.12944 5.23678 5.40415 5.68316 5.73884 5.86914 6.22458 6.23468 6.32492 6.75909 7.52237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.072 3.928 4 C -0.107 4.107 5 H 0.104 0.896 6 C -0.138 4.138 7 C 0.126 3.874 8 H 0.118 0.882 9 N -0.717 5.717 10 C 0.594 3.406 11 O -0.548 6.548 12 C -0.241 4.241 13 C 0.124 3.876 14 C -0.100 4.100 15 N -0.546 5.546 16 C -0.028 4.028 17 C -0.040 4.040 18 O -0.523 6.523 19 Si 0.670 3.330 20 C -0.127 4.127 21 C -0.144 4.144 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.400 0.600 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.413 0.587 34 H 0.130 0.870 35 H 0.377 0.623 36 H -0.246 1.246 37 H -0.256 1.256 38 H 0.146 0.854 39 H 0.084 0.916 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 3.609 0.272 3.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.126 4.126 5 H 0.122 0.878 6 C -0.177 4.177 7 C 0.021 3.979 8 H 0.136 0.864 9 N -0.367 5.367 10 C 0.383 3.617 11 O -0.427 6.427 12 C -0.251 4.251 13 C 0.006 3.994 14 C -0.157 4.157 15 N -0.145 5.145 16 C -0.136 4.136 17 C -0.151 4.151 18 O -0.329 6.329 19 Si 0.570 3.430 20 C -0.152 4.152 21 C -0.183 4.183 22 H 0.105 0.895 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.235 0.765 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.252 0.748 34 H 0.147 0.853 35 H 0.225 0.775 36 H -0.170 1.170 37 H -0.181 1.181 38 H 0.164 0.836 39 H 0.102 0.898 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.114 3.498 0.627 3.724 hybrid contribution -1.161 0.136 0.972 1.520 sum -0.047 3.634 1.599 3.971 Atomic orbital electron populations 1.22759 0.80887 1.02970 0.99982 1.87900 1.19760 1.27855 1.95396 1.22526 0.92918 0.84857 1.00159 1.22341 0.93003 0.98446 0.98822 0.87806 1.23362 0.97184 0.96997 1.00113 1.22453 0.96147 0.90104 0.89211 0.86439 1.45734 1.20021 1.28351 1.42605 1.17348 0.80622 0.84045 0.79645 1.90749 1.53743 1.33299 1.64951 1.20131 0.97743 1.00502 1.06707 1.20420 0.97112 0.89195 0.92702 1.20658 0.95021 0.97586 1.02413 1.41736 1.17448 1.20197 1.35146 1.20457 0.89184 0.98798 1.05116 1.24379 0.97650 0.95129 0.97984 1.86656 1.35890 1.61780 1.48527 0.95529 0.82572 0.81605 0.83260 1.21789 0.99662 0.95016 0.98736 1.23532 0.97305 1.00962 0.96476 0.89494 0.94072 0.94021 0.93176 0.93100 0.90160 0.89417 0.76534 0.89885 0.91568 0.87781 0.74764 0.85274 0.77487 1.16950 1.18099 0.83610 0.89755 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 11.01 101.05 1.11 1.11 16 2 O -0.39 -0.97 10.70 -35.23 -0.38 -1.34 16 3 C 0.07 0.01 5.77 37.16 0.21 0.23 16 4 C -0.11 0.01 4.01 -89.80 -0.36 -0.35 16 5 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 6 C -0.14 0.19 7.39 -25.92 -0.19 0.00 16 7 C 0.13 0.08 4.24 -67.12 -0.28 -0.21 16 8 H 0.12 0.26 7.47 -51.93 -0.39 -0.13 16 9 N -0.72 -0.57 5.35 -54.14 -0.29 -0.86 16 10 C 0.59 2.05 7.81 -12.60 -0.10 1.95 16 11 O -0.55 -3.51 14.42 5.25 0.08 -3.43 16 12 C -0.24 -0.50 6.29 -103.35 -0.65 -1.16 16 13 C 0.12 0.12 7.17 -81.88 -0.59 -0.47 16 14 C -0.10 0.01 9.88 36.01 0.36 0.36 16 15 N -0.55 0.61 5.41 -5.42 -0.03 0.58 16 16 C -0.03 0.02 6.09 -81.87 -0.50 -0.48 16 17 C -0.04 0.07 2.98 36.01 0.11 0.18 16 18 O -0.52 0.05 12.88 -35.23 -0.45 -0.40 16 19 Si 0.67 -1.78 30.96 -169.99 -5.26 -7.05 16 20 C -0.13 -0.06 10.45 -37.50 -0.39 -0.45 16 21 C -0.14 -0.09 7.43 -25.92 -0.19 -0.28 16 22 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 23 H 0.04 -0.03 8.14 -51.93 -0.42 -0.46 16 24 H 0.04 -0.04 8.14 -51.93 -0.42 -0.46 16 25 H 0.05 -0.03 7.84 -51.93 -0.41 -0.43 16 26 H 0.05 -0.03 8.14 -51.93 -0.42 -0.46 16 27 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 28 H 0.09 -0.22 8.08 -51.93 -0.42 -0.64 16 29 H 0.40 -0.54 7.85 -40.82 -0.32 -0.86 16 30 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 32 H 0.10 0.22 6.47 -51.93 -0.34 -0.12 16 33 H 0.41 -1.44 6.72 -40.82 -0.27 -1.71 16 34 H 0.13 -0.33 7.96 -51.93 -0.41 -0.74 16 35 H 0.38 -1.00 8.70 45.56 0.40 -0.60 16 36 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 37 H -0.26 0.25 7.11 56.52 0.40 0.65 16 38 H 0.15 -0.16 7.69 -52.49 -0.40 -0.56 16 39 H 0.08 0.03 7.90 -51.93 -0.41 -0.38 16 40 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 334.42 15.07 5.04 5.04 Total: 0.00 -7.74 334.42 -8.74 -16.48 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: -5.98 Total: -9.45 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.47 Total: 0.43 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -0.32 Total: -0.28 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.76 Total: -5.18 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: -5.26 Total: -7.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -7.74 -8.74 -16.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.260 kcal (2) G-P(sol) polarization free energy of solvation -7.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds