Wall clock time and date at job start Sat Mar 6 2021 20:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 H 1.08992 * 112.85173 * 43.80095 * 4 3 2 6 6 C 1.53787 * 113.61228 * 175.00079 * 4 3 2 7 7 C 1.53776 * 87.07971 * 139.97805 * 6 4 3 8 8 H 1.09004 * 113.61682 * 89.11771 * 7 6 4 9 9 N 1.46507 * 113.61558 * 220.01556 * 7 6 4 10 10 C 1.34766 * 120.00093 * 205.00202 * 9 7 6 11 11 O 1.21626 * 120.00460 * 359.97438 * 10 9 7 12 12 C 1.47265 * 119.99731 * 179.97438 * 10 9 7 13 13 C 1.36775 * 126.93998 * 179.71114 * 12 10 9 14 14 C 1.50703 * 125.80299 * 359.97438 * 13 12 10 15 15 N 1.34659 * 108.39474 * 179.83836 * 13 12 10 16 16 C 1.36449 * 110.29622 * 0.44212 * 15 13 12 17 17 C 1.50703 * 125.57091 * 179.75298 * 16 15 13 18 18 O 1.42900 * 109.47251 * 244.97721 * 17 16 15 19 19 Si 1.86304 * 109.46978 * 4.97333 * 17 16 15 20 20 C 1.34478 * 108.86006 * 359.72893 * 16 15 13 21 21 C 1.53781 * 87.08649 * 334.56685 * 7 6 4 22 22 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 24 24 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 25 25 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 26 26 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 27 27 H 1.08999 * 113.61008 * 254.52793 * 6 4 3 28 28 H 1.09001 * 113.61614 * 25.34468 * 6 4 3 29 29 H 0.97002 * 119.99477 * 25.00218 * 9 7 6 30 30 H 1.09004 * 109.46561 * 90.00089 * 14 13 12 31 31 H 1.08997 * 109.46683 * 209.99966 * 14 13 12 32 32 H 1.09000 * 109.46858 * 330.00336 * 14 13 12 33 33 H 0.96999 * 124.85017 * 180.15421 * 15 13 12 34 34 H 1.08993 * 109.47171 * 124.97409 * 17 16 15 35 35 H 0.96705 * 113.99616 * 59.99503 * 18 17 16 36 36 H 1.48498 * 109.99943 * 180.02562 * 19 17 16 37 37 H 1.48497 * 110.00343 * 301.31924 * 19 17 16 38 38 H 1.07999 * 126.84119 * 179.97438 * 20 16 15 39 39 H 1.08998 * 113.61029 * 270.89062 * 21 7 6 40 40 H 1.08997 * 113.61702 * 139.98220 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8998 0.4288 -0.6961 6 6 4.2602 2.5355 -0.1235 7 6 5.2677 1.9993 0.9072 8 1 6.1068 1.4656 0.4608 9 7 5.6871 2.9989 1.8928 10 6 6.8764 2.8746 2.5144 11 8 7.6014 1.9325 2.2575 12 6 7.2981 3.8797 3.5047 13 6 8.4643 3.8907 4.2193 14 6 9.5614 2.8612 4.1321 15 7 8.4668 4.9794 5.0118 16 6 7.3142 5.6900 4.8434 17 6 6.9568 6.9643 5.5642 18 8 5.8182 6.7371 6.3973 19 14 8.3961 7.5082 6.6147 20 6 6.5496 5.0678 3.9288 21 6 4.1452 1.0747 1.4069 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6885 1.8465 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 4.6940 2.7102 -1.1081 28 1 3.6731 3.3804 0.2364 29 1 5.1087 3.7501 2.0980 30 1 10.2775 3.1576 3.3656 31 1 10.0683 2.7882 5.0942 32 1 9.1318 1.8935 3.8732 33 1 9.1835 5.2213 5.6189 34 1 6.7248 7.7410 4.8356 35 1 5.9532 6.0565 7.0708 36 1 8.0561 8.7636 7.3313 37 1 8.7428 6.4446 7.5912 38 1 5.5776 5.3803 3.5767 39 1 3.5272 1.5201 2.1864 40 1 4.4860 0.0702 1.6577 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12906260_9865296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:50:28 Heat of formation + Delta-G solvation = -47.423616 kcal Electronic energy + Delta-G solvation = -21826.367424 eV Core-core repulsion = 18416.236589 eV Total energy + Delta-G solvation = -3410.130835 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48966 -40.95119 -39.45791 -38.16907 -37.86348 -34.60226 -32.81371 -32.10035 -29.64614 -28.89579 -27.00136 -26.62834 -25.68109 -24.11948 -22.43273 -21.48279 -21.18503 -20.12826 -18.75241 -17.83255 -17.60558 -17.12816 -16.93744 -16.74948 -16.61224 -15.96826 -15.83255 -15.72051 -15.26047 -14.96245 -14.56115 -14.50365 -13.98123 -13.92261 -13.82945 -13.43713 -13.37061 -13.16800 -12.93306 -12.75953 -12.61443 -12.36867 -12.14500 -12.03347 -11.62403 -11.37920 -10.97679 -10.61272 -10.57899 -10.09524 -9.78849 -9.16484 -5.04730 0.69561 1.13093 1.27303 1.45184 1.81820 2.04874 2.42389 2.51400 2.84651 3.33765 3.49745 3.63147 3.67006 3.85069 3.87452 3.92845 4.09028 4.22659 4.33993 4.39905 4.48863 4.50356 4.54974 4.56441 4.60443 4.72199 4.72974 4.76477 4.82079 4.83271 4.85168 5.02451 5.04840 5.08932 5.22188 5.36022 5.63815 5.69529 5.85991 6.24527 6.39406 6.44604 6.67685 7.36048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.070 3.930 4 C -0.105 4.105 5 H 0.094 0.906 6 C -0.120 4.120 7 C 0.120 3.880 8 H 0.097 0.903 9 N -0.705 5.705 10 C 0.586 3.414 11 O -0.588 6.588 12 C -0.265 4.265 13 C 0.118 3.882 14 C -0.097 4.097 15 N -0.535 5.535 16 C -0.021 4.021 17 C -0.047 4.047 18 O -0.541 6.541 19 Si 0.755 3.245 20 C -0.136 4.136 21 C -0.143 4.143 22 H 0.090 0.910 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.412 0.588 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.426 0.574 34 H 0.141 0.859 35 H 0.387 0.613 36 H -0.294 1.294 37 H -0.275 1.275 38 H 0.158 0.842 39 H 0.089 0.911 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 4.965 0.451 4.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.006 4.006 4 C -0.124 4.124 5 H 0.113 0.887 6 C -0.158 4.158 7 C 0.015 3.985 8 H 0.115 0.885 9 N -0.355 5.355 10 C 0.376 3.624 11 O -0.471 6.471 12 C -0.275 4.275 13 C -0.002 4.002 14 C -0.154 4.154 15 N -0.135 5.135 16 C -0.129 4.129 17 C -0.157 4.157 18 O -0.348 6.348 19 Si 0.659 3.341 20 C -0.160 4.160 21 C -0.182 4.182 22 H 0.108 0.892 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.249 0.751 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.267 0.733 34 H 0.158 0.842 35 H 0.236 0.764 36 H -0.221 1.221 37 H -0.201 1.201 38 H 0.176 0.824 39 H 0.108 0.892 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.771 4.864 0.796 4.989 hybrid contribution -1.092 -0.268 0.963 1.480 sum -0.321 4.596 1.759 4.932 Atomic orbital electron populations 1.22886 0.79822 1.03548 1.00802 1.87861 1.21126 1.29262 1.95594 1.22627 0.92621 0.84278 1.01111 1.22294 0.93254 0.99020 0.97837 0.88740 1.23289 0.96013 0.96812 0.99731 1.22428 0.95784 0.90422 0.89877 0.88532 1.45658 1.19437 1.28502 1.41950 1.17688 0.80914 0.83895 0.79866 1.90723 1.55013 1.34936 1.66385 1.20207 0.98910 1.01121 1.07280 1.20559 0.97068 0.89770 0.92773 1.20611 0.94860 0.96135 1.03783 1.41704 1.17704 1.19416 1.34712 1.20616 0.88932 0.98855 1.04543 1.24634 0.97914 0.94731 0.98398 1.86631 1.36814 1.62318 1.49056 0.94531 0.80907 0.77620 0.81070 1.21972 1.00343 0.94561 0.99138 1.23517 0.97470 0.99952 0.97277 0.89169 0.93308 0.93095 0.92267 0.91966 0.89461 0.87496 0.75145 0.89425 0.89300 0.90224 0.73311 0.84171 0.76402 1.22075 1.20110 0.82398 0.89202 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 11.01 113.37 1.25 1.24 16 2 O -0.42 -2.19 10.70 -148.98 -1.59 -3.79 16 3 C 0.07 0.00 5.77 71.98 0.42 0.42 16 4 C -0.11 -0.02 4.01 -10.26 -0.04 -0.06 16 5 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 6 C -0.12 0.38 7.39 31.12 0.23 0.61 16 7 C 0.12 0.28 4.24 45.51 0.19 0.47 16 8 H 0.10 0.66 7.47 -2.38 -0.02 0.64 16 9 N -0.71 -1.67 5.35 -443.45 -2.37 -4.04 16 10 C 0.59 4.93 7.81 86.62 0.68 5.61 16 11 O -0.59 -9.01 14.42 -4.11 -0.06 -9.07 16 12 C -0.27 -1.27 6.29 -19.04 -0.12 -1.39 16 13 C 0.12 0.25 7.17 41.78 0.30 0.55 16 14 C -0.10 -0.05 9.88 71.24 0.70 0.65 16 15 N -0.54 1.62 5.41 -171.06 -0.93 0.70 16 16 C -0.02 0.04 6.09 40.98 0.25 0.29 16 17 C -0.05 0.21 2.98 71.24 0.21 0.42 16 18 O -0.54 0.56 12.88 -148.98 -1.92 -1.36 16 19 Si 0.76 -4.69 30.96 68.60 2.12 -2.57 16 20 C -0.14 -0.06 10.45 23.62 0.25 0.19 16 21 C -0.14 -0.34 7.43 31.12 0.23 -0.11 16 22 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 23 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 24 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 25 H 0.06 -0.12 7.84 -2.39 -0.02 -0.13 16 26 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.11 -0.71 8.08 -2.39 -0.02 -0.73 16 29 H 0.41 -1.17 7.85 -92.71 -0.73 -1.90 16 30 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 31 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.08 0.49 6.47 -2.39 -0.02 0.47 16 33 H 0.43 -3.54 6.72 -92.71 -0.62 -4.16 16 34 H 0.14 -0.93 7.96 -2.39 -0.02 -0.95 16 35 H 0.39 -2.31 8.70 -74.05 -0.64 -2.96 16 36 H -0.29 -0.60 7.11 99.48 0.71 0.11 16 37 H -0.27 0.85 7.11 99.48 0.71 1.56 16 38 H 0.16 -0.47 7.69 -2.91 -0.02 -0.49 16 39 H 0.09 0.11 7.90 -2.39 -0.02 0.09 16 40 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 Total: 0.00 -19.56 334.42 -1.09 -20.65 By element: Atomic # 1 Polarization: -8.52 SS G_CDS: -0.89 Total: -9.41 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 4.55 Total: 8.89 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -3.30 Total: -3.34 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -3.57 Total: -14.22 kcal Atomic # 14 Polarization: -4.69 SS G_CDS: 2.12 Total: -2.57 kcal Total: -19.56 -1.09 -20.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12906260_9865296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.773 kcal (2) G-P(sol) polarization free energy of solvation -19.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds