Wall clock time and date at job start Sat Mar 6 2021 18:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34802 * 125.89900 * 2 1 4 4 C 1.40991 * 107.48278 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.25704 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47208 * 254.97643 * 5 4 3 7 7 Si 1.86300 * 109.47139 * 14.97873 * 5 4 3 8 8 C 1.34804 * 107.48936 * 359.74108 * 4 3 2 9 9 C 1.50696 * 125.91225 * 180.25980 * 8 4 3 10 10 N 1.36649 * 125.90500 * 180.02562 * 2 1 3 11 11 C 1.39671 * 125.67850 * 359.97438 * 10 2 1 12 12 C 1.40200 * 120.15313 * 270.03112 * 11 10 2 13 13 C 1.47570 * 120.19683 * 359.96831 * 12 11 10 14 14 O 1.21586 * 119.99745 * 359.73326 * 13 12 11 15 15 N 1.34776 * 120.00310 * 179.72752 * 13 12 11 16 16 C 1.46496 * 120.00015 * 180.02562 * 15 13 12 17 17 H 1.09004 * 112.90889 * 336.25053 * 16 15 13 18 18 C 1.53784 * 113.61524 * 107.50411 * 16 15 13 19 19 C 1.53779 * 87.08045 * 89.11591 * 18 16 15 20 20 H 1.09001 * 113.69124 * 270.87427 * 19 18 16 21 21 S 1.81401 * 113.61486 * 139.98169 * 19 18 16 22 22 C 1.81402 * 101.92224 * 82.50267 * 21 19 18 23 23 O 1.42098 * 108.58060 * 196.98831 * 21 19 18 24 24 O 1.42098 * 108.57978 * 328.01502 * 21 19 18 25 25 C 1.53779 * 87.08402 * 25.43458 * 19 18 16 26 26 C 1.39660 * 119.60968 * 179.70578 * 12 11 10 27 27 C 1.37825 * 119.91984 * 0.26839 * 26 12 11 28 28 C 1.38535 * 120.31300 * 0.02562 * 27 26 12 29 29 C 1.38073 * 120.38806 * 0.02562 * 28 27 26 30 30 H 1.08993 * 109.47467 * 269.97287 * 1 2 3 31 31 H 1.09006 * 109.47163 * 29.97887 * 1 2 3 32 32 H 1.09007 * 109.47325 * 149.96858 * 1 2 3 33 33 H 1.07995 * 126.26331 * 0.04583 * 3 2 1 34 34 H 1.09000 * 109.47053 * 134.97632 * 5 4 3 35 35 H 0.96707 * 113.99951 * 179.97438 * 6 5 4 36 36 H 1.48507 * 109.99969 * 178.67880 * 7 5 4 37 37 H 1.48497 * 110.00080 * 299.99913 * 7 5 4 38 38 H 1.09004 * 109.47291 * 270.19810 * 9 8 4 39 39 H 1.09007 * 109.46833 * 30.18718 * 9 8 4 40 40 H 1.08994 * 109.47634 * 150.18808 * 9 8 4 41 41 H 0.96998 * 119.99607 * 0.02562 * 15 13 12 42 42 H 1.09002 * 113.61478 * 203.66556 * 18 16 15 43 43 H 1.09004 * 113.61162 * 334.56734 * 18 16 15 44 44 H 1.09006 * 109.47004 * 59.99646 * 22 21 19 45 45 H 1.08994 * 109.47411 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.46831 * 300.00428 * 22 21 19 47 47 H 1.08997 * 113.61646 * 220.02209 * 25 19 18 48 48 H 1.08998 * 113.69354 * 89.12517 * 25 19 18 49 49 H 1.08010 * 120.04106 * 180.29703 * 26 12 11 50 50 H 1.08007 * 119.84464 * 180.02562 * 27 26 12 51 51 H 1.08000 * 119.80593 * 179.97438 * 28 27 26 52 52 H 1.07992 * 119.95584 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2974 1.0920 0.0000 4 6 3.6351 0.6466 -0.0006 5 6 4.8647 1.5180 -0.0003 6 8 5.4549 1.5094 -1.3016 7 14 4.3903 3.2611 0.4550 8 6 3.6133 -0.7013 0.0049 9 6 4.8194 -1.6048 0.0119 10 7 2.3084 -1.1068 -0.0005 11 6 1.8671 -2.4320 -0.0006 12 6 1.6445 -3.1002 1.2117 13 6 1.8756 -2.4078 2.4942 14 8 2.2649 -1.2560 2.5016 15 7 1.6550 -3.0521 3.6572 16 6 1.8839 -2.3645 4.9304 17 1 2.5899 -1.5384 4.8455 18 6 0.5887 -1.9942 5.6721 19 6 0.6706 -3.3758 6.3425 20 1 0.1688 -4.1648 5.7823 21 16 0.2153 -3.3597 8.0984 22 6 -1.5952 -3.4375 8.0168 23 8 0.6931 -4.5546 8.7010 24 8 0.5901 -2.1057 8.6518 25 6 2.1878 -3.3169 6.0990 26 6 1.1973 -4.4232 1.1983 27 6 0.9835 -5.0645 -0.0027 28 6 1.2104 -4.4031 -1.1987 29 6 1.6535 -3.0954 -1.2004 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5143 33 1 1.9666 2.1200 0.0007 34 1 5.5812 1.1349 0.7263 35 1 6.2527 2.0510 -1.3753 36 1 5.5987 4.1236 0.4900 37 1 3.4135 3.7948 -0.5280 38 1 5.1152 -1.8240 -1.0141 39 1 5.6414 -1.1095 0.5289 40 1 4.5743 -2.5341 0.5259 41 1 1.3447 -3.9711 3.6512 42 1 0.7062 -1.1636 6.3681 43 1 -0.2731 -1.8783 5.0147 44 1 -1.8969 -4.3515 7.5051 45 1 -2.0049 -3.4340 9.0268 46 1 -1.9717 -2.5734 7.4693 47 1 2.6171 -4.2687 5.7862 48 1 2.7439 -2.8482 6.9109 49 1 1.0190 -4.9431 2.1281 50 1 0.6373 -6.0876 -0.0116 51 1 1.0405 -4.9137 -2.1351 52 1 1.8285 -2.5867 -2.1368 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12912156_12335856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:20:03 Heat of formation + Delta-G solvation = -10.437617 kcal Electronic energy + Delta-G solvation = -37517.396271 eV Core-core repulsion = 32771.595763 eV Total energy + Delta-G solvation = -4745.800507 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.149 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.85965 -41.33787 -39.99514 -38.84316 -37.98371 -37.78802 -37.03681 -34.76881 -34.12410 -33.61187 -32.17934 -30.48341 -30.37879 -30.11508 -27.39519 -26.89453 -26.85391 -24.97149 -24.58737 -23.46470 -22.07991 -21.17290 -20.84362 -19.96803 -19.66264 -18.99386 -18.44822 -18.10536 -17.69958 -17.31020 -17.11706 -16.88603 -16.52459 -16.28035 -16.06186 -15.91263 -15.78349 -15.37144 -15.23936 -14.96694 -14.80882 -14.47639 -14.23896 -14.22451 -14.13923 -14.00354 -13.89369 -13.85540 -13.71854 -13.61951 -13.58209 -13.39575 -13.22082 -13.12893 -13.11501 -13.01295 -12.92243 -12.52915 -12.43105 -12.32013 -12.06315 -11.98447 -11.88912 -11.78365 -11.08482 -10.97273 -10.33434 -10.29683 -10.12183 -10.00695 -9.53576 -8.67497 -4.85981 -0.91501 -0.40746 0.05133 1.21761 1.39950 1.60087 1.75575 1.83090 1.86417 1.90200 1.97679 2.03083 2.59296 2.63369 2.88266 3.21743 3.43118 3.51387 3.61841 3.64119 3.66096 3.78572 3.90377 3.96910 4.04495 4.10585 4.19128 4.20898 4.24577 4.25827 4.26786 4.38175 4.46178 4.52205 4.55330 4.55498 4.62586 4.66046 4.67974 4.70517 4.74144 4.75968 4.87197 4.93976 4.95156 4.98603 4.99296 5.06655 5.19940 5.24360 5.29891 5.43939 5.45742 5.64468 6.09523 6.25362 6.44299 6.64151 6.70485 7.15791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.035 3.965 3 C -0.209 4.209 4 C -0.171 4.171 5 C -0.045 4.045 6 O -0.559 6.559 7 Si 0.761 3.239 8 C 0.054 3.946 9 C -0.072 4.072 10 N -0.392 5.392 11 C 0.144 3.856 12 C -0.142 4.142 13 C 0.548 3.452 14 O -0.537 6.537 15 N -0.694 5.694 16 C 0.130 3.870 17 H 0.093 0.907 18 C -0.124 4.124 19 C -0.584 4.584 20 H 0.190 0.810 21 S 2.421 3.579 22 C -0.642 4.642 23 O -0.987 6.987 24 O -0.982 6.982 25 C -0.119 4.119 26 C -0.072 4.072 27 C -0.106 4.106 28 C -0.078 4.078 29 C -0.126 4.126 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.073 0.927 35 H 0.387 0.613 36 H -0.283 1.283 37 H -0.299 1.299 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.415 0.585 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.154 0.846 45 H 0.129 0.871 46 H 0.150 0.850 47 H 0.110 0.890 48 H 0.102 0.898 49 H 0.167 0.833 50 H 0.170 0.830 51 H 0.160 0.840 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -8.559 -1.204 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.233 4.233 4 C -0.177 4.177 5 C -0.155 4.155 6 O -0.368 6.368 7 Si 0.667 3.333 8 C -0.056 4.056 9 C -0.129 4.129 10 N -0.066 5.066 11 C 0.054 3.946 12 C -0.146 4.146 13 C 0.336 3.664 14 O -0.414 6.414 15 N -0.348 5.348 16 C 0.023 3.977 17 H 0.111 0.889 18 C -0.164 4.164 19 C -0.695 4.695 20 H 0.208 0.792 21 S 2.609 3.391 22 C -0.794 4.794 23 O -0.984 6.984 24 O -0.979 6.979 25 C -0.158 4.158 26 C -0.091 4.091 27 C -0.123 4.123 28 C -0.096 4.096 29 C -0.145 4.145 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.236 0.764 36 H -0.210 1.210 37 H -0.227 1.227 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.173 0.827 45 H 0.147 0.853 46 H 0.168 0.832 47 H 0.128 0.872 48 H 0.120 0.880 49 H 0.185 0.815 50 H 0.188 0.812 51 H 0.178 0.822 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.855 -7.579 -0.750 9.607 hybrid contribution 0.466 -0.127 -1.370 1.452 sum -5.389 -7.706 -2.120 9.639 Atomic orbital electron populations 1.20280 0.86920 1.03465 1.02675 1.20457 0.93990 0.84807 1.08158 1.20569 0.92380 0.97776 1.12551 1.18587 0.93473 0.92267 1.13376 1.24173 0.94539 1.10040 0.86744 1.86589 1.46448 1.72418 1.31328 0.93822 0.78666 0.72327 0.88508 1.20217 0.84436 0.93903 1.07082 1.20187 0.93305 0.97137 1.02267 1.40993 1.05156 1.03047 1.57408 1.17812 0.99924 0.83348 0.93511 1.20204 1.06157 0.96390 0.91821 1.18346 0.77672 0.86148 0.84277 1.90931 1.45110 1.17781 1.87566 1.45349 1.68433 1.17209 1.03785 1.21621 0.97896 0.95886 0.82303 0.88909 1.23242 1.00278 0.93198 0.99645 1.31672 1.06981 1.08239 1.22570 0.79243 1.07506 0.79825 0.73376 0.78399 1.30106 1.22459 1.13950 1.12906 1.93553 1.80306 1.49178 1.75402 1.93559 1.82879 1.44826 1.76660 1.23069 0.91567 1.02482 0.98685 1.21657 0.95251 0.91238 1.00949 1.21693 0.97700 1.01908 0.91030 1.21666 0.94615 0.92556 1.00773 1.21437 1.00288 0.96337 0.96452 0.91075 0.89379 0.91664 0.84548 0.90934 0.76362 1.20974 1.22662 0.91151 0.90138 0.92361 0.74647 0.87310 0.87837 0.82718 0.85277 0.83198 0.87188 0.87976 0.81539 0.81211 0.82218 0.85469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.09 71.24 0.72 0.45 16 2 C 0.03 0.34 6.01 41.02 0.25 0.58 16 3 C -0.21 -2.51 9.27 22.16 0.21 -2.30 16 4 C -0.17 -2.09 5.39 -19.98 -0.11 -2.20 16 5 C -0.05 -0.38 2.60 71.24 0.18 -0.20 16 6 O -0.56 -5.16 12.86 -148.98 -1.92 -7.08 16 7 Si 0.76 4.75 30.84 68.60 2.12 6.86 16 8 C 0.05 0.59 5.97 41.02 0.25 0.84 16 9 C -0.07 -0.48 9.87 71.23 0.70 0.22 16 10 N -0.39 -3.40 1.45 -319.55 -0.46 -3.86 16 11 C 0.14 0.47 4.52 38.49 0.17 0.64 16 12 C -0.14 0.13 5.89 -20.00 -0.12 0.01 16 13 C 0.55 0.91 7.77 86.71 0.67 1.58 16 14 O -0.54 -5.46 13.28 -3.99 -0.05 -5.51 16 15 N -0.69 4.22 5.21 -443.16 -2.31 1.91 16 16 C 0.13 -0.59 4.32 45.52 0.20 -0.39 16 17 H 0.09 0.09 7.47 -2.39 -0.02 0.07 16 18 C -0.12 0.93 7.42 31.12 0.23 1.17 16 19 C -0.58 6.18 4.05 31.12 0.13 6.31 16 20 H 0.19 -3.57 8.14 -2.39 -0.02 -3.59 16 21 S 2.42 -10.05 5.34 -56.49 -0.30 -10.35 16 22 C -0.64 7.36 10.62 113.37 1.20 8.56 16 23 O -0.99 -4.82 18.10 -127.37 -2.30 -7.12 16 24 O -0.98 -4.84 17.19 -127.37 -2.19 -7.03 16 25 C -0.12 0.85 7.41 31.12 0.23 1.08 16 26 C -0.07 0.65 9.53 22.52 0.21 0.86 16 27 C -0.11 1.10 10.02 22.24 0.22 1.32 16 28 C -0.08 0.55 10.03 22.30 0.22 0.78 16 29 C -0.13 0.08 9.96 22.36 0.22 0.30 16 30 H 0.07 0.21 8.14 -2.39 -0.02 0.20 16 31 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 32 H 0.06 0.12 7.83 -2.38 -0.02 0.10 16 33 H 0.14 1.41 6.55 -2.91 -0.02 1.39 16 34 H 0.07 0.40 7.49 -2.39 -0.02 0.38 16 35 H 0.39 0.22 8.74 -74.05 -0.65 -0.42 16 36 H -0.28 -2.35 7.11 99.48 0.71 -1.64 16 37 H -0.30 -3.90 7.06 99.48 0.70 -3.20 16 38 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.08 0.46 7.50 -2.38 -0.02 0.44 16 40 H 0.06 0.33 7.83 -2.39 -0.02 0.31 16 41 H 0.41 -5.50 6.73 -92.71 -0.62 -6.13 16 42 H 0.11 -0.58 7.36 -2.39 -0.02 -0.60 16 43 H 0.10 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H 0.15 -2.55 8.14 -2.39 -0.02 -2.57 16 45 H 0.13 -1.32 8.14 -2.39 -0.02 -1.34 16 46 H 0.15 -2.25 8.14 -2.39 -0.02 -2.27 16 47 H 0.11 -1.12 8.14 -2.39 -0.02 -1.13 16 48 H 0.10 -0.54 8.10 -2.39 -0.02 -0.56 16 49 H 0.17 -2.75 6.40 -2.91 -0.02 -2.77 16 50 H 0.17 -2.81 8.06 -2.91 -0.02 -2.83 16 51 H 0.16 -1.88 8.06 -2.91 -0.02 -1.90 16 52 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 Total: 0.00 -39.22 438.62 -1.90 -41.11 By element: Atomic # 1 Polarization: -28.27 SS G_CDS: -0.27 Total: -28.55 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 5.80 Total: 19.62 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -2.77 Total: -1.95 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -6.46 Total: -26.74 kcal Atomic # 14 Polarization: 4.75 SS G_CDS: 2.12 Total: 6.86 kcal Atomic # 16 Polarization: -10.05 SS G_CDS: -0.30 Total: -10.35 kcal Total: -39.22 -1.90 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_12335856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.676 kcal (2) G-P(sol) polarization free energy of solvation -39.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds