Wall clock time and date at job start Sat Mar 6 2021 18:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42107 * 108.57597 * 2 1 4 4 O 1.42100 * 108.58261 * 228.97532 * 2 1 3 5 5 C 1.81402 * 101.92344 * 114.48664 * 2 1 3 6 6 H 1.08996 * 112.84968 * 53.80203 * 5 2 1 7 7 C 1.53775 * 113.61485 * 185.00482 * 5 2 1 8 8 C 1.53777 * 87.08337 * 139.97950 * 7 5 2 9 9 H 1.08997 * 113.61843 * 219.93592 * 8 7 5 10 10 N 1.46500 * 113.61412 * 89.11419 * 8 7 5 11 11 C 1.34782 * 120.00059 * 156.53194 * 10 8 7 12 12 O 1.21648 * 119.99963 * 0.02562 * 11 10 8 13 13 C 1.47060 * 119.99914 * 179.97438 * 11 10 8 14 14 C 1.35860 * 125.42478 * 179.97438 * 13 11 10 15 15 C 1.41596 * 107.72956 * 179.79277 * 14 13 11 16 16 C 1.40061 * 133.37763 * 179.52841 * 15 14 13 17 17 C 1.36482 * 119.82613 * 180.39051 * 16 15 14 18 18 C 1.38893 * 120.61622 * 0.26393 * 17 16 15 19 19 C 1.50695 * 119.67656 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.47421 * 119.99516 * 19 18 17 21 21 Si 1.86308 * 109.47026 * 359.97438 * 19 18 17 22 22 C 1.37709 * 120.64807 * 0.02562 * 18 17 16 23 23 C 1.39185 * 119.81194 * 359.97438 * 22 18 17 24 24 N 1.37489 * 133.19108 * 179.97438 * 23 22 18 25 25 C 1.53782 * 87.17219 * 334.52578 * 8 7 5 26 26 H 1.08997 * 109.47667 * 305.50776 * 1 2 3 27 27 H 1.08997 * 109.47502 * 65.51856 * 1 2 3 28 28 H 1.09010 * 109.46880 * 185.51057 * 1 2 3 29 29 H 1.09001 * 113.61432 * 25.42871 * 7 5 2 30 30 H 1.09003 * 113.61459 * 254.52851 * 7 5 2 31 31 H 0.97006 * 120.00260 * 336.53013 * 10 8 7 32 32 H 1.08004 * 126.14031 * 0.04761 * 14 13 11 33 33 H 1.08002 * 120.08960 * 0.67805 * 16 15 14 34 34 H 1.07997 * 119.68818 * 180.23564 * 17 16 15 35 35 H 1.09005 * 109.46844 * 239.99820 * 19 18 17 36 36 H 0.96700 * 113.99577 * 179.97438 * 20 19 18 37 37 H 1.48504 * 109.99624 * 298.68205 * 21 19 18 38 38 H 1.48500 * 109.99974 * 60.00308 * 21 19 18 39 39 H 1.08003 * 120.09318 * 179.97438 * 22 18 17 40 40 H 0.97000 * 125.60433 * 359.97438 * 24 23 22 41 41 H 1.08998 * 113.61485 * 140.02373 * 25 8 7 42 42 H 1.09001 * 113.61274 * 270.92089 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.6958 -1.6957 1.7677 7 6 3.6893 -0.7534 1.9508 8 6 3.2921 -0.3792 3.3885 9 1 3.9584 0.3496 3.8500 10 7 3.0346 -1.5382 4.2467 11 6 3.1442 -1.4232 5.5852 12 8 3.4564 -0.3569 6.0805 13 6 2.8852 -2.5865 6.4467 14 6 2.9634 -2.5949 7.8030 15 6 2.6368 -3.8996 8.2457 16 6 2.5596 -4.4949 9.5112 17 6 2.2158 -5.8111 9.6224 18 6 1.9463 -6.5699 8.4907 19 6 1.5693 -8.0214 8.6380 20 8 0.2699 -8.2348 8.0829 21 14 1.5565 -8.4795 10.4439 22 6 2.0213 -6.0090 7.2352 23 6 2.3698 -4.6687 7.0958 24 7 2.5249 -3.8452 6.0058 25 6 2.0173 0.2420 2.7934 26 1 -0.3634 0.5968 0.8365 27 1 -0.3634 0.4258 -0.9352 28 1 -0.3633 -1.0230 0.0987 29 1 4.2602 0.0218 1.4397 30 1 4.1440 -1.7405 1.8663 31 1 2.7853 -2.3884 3.8518 32 1 3.2236 -1.7558 8.4313 33 1 2.7670 -3.9129 10.3969 34 1 2.1533 -6.2668 10.5995 35 1 2.2956 -8.6407 8.1115 36 1 -0.0379 -9.1496 8.1427 37 1 2.9103 -8.2923 11.0248 38 1 0.5705 -7.6422 11.1733 39 1 1.8103 -6.6074 6.3613 40 1 2.4017 -4.1052 5.0795 41 1 1.1230 0.0580 3.3888 42 1 2.1319 1.2889 2.5123 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12912156_13158378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:21:13 Heat of formation + Delta-G solvation = -41.726472 kcal Electronic energy + Delta-G solvation = -27770.404730 eV Core-core repulsion = 23618.086434 eV Total energy + Delta-G solvation = -4152.318296 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.102 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.84332 -41.26276 -39.53711 -38.79933 -38.03434 -37.08956 -37.01414 -34.68120 -33.42311 -31.31157 -30.56564 -30.43508 -27.70674 -26.96659 -26.31627 -24.45506 -23.33811 -22.08299 -21.40672 -21.18460 -19.77997 -19.68883 -18.47778 -18.24229 -17.89948 -17.42032 -17.17405 -17.04254 -16.91390 -16.54930 -16.44069 -15.78035 -15.45846 -15.25855 -15.03227 -14.84700 -14.79920 -14.44334 -14.30810 -14.08824 -14.03741 -13.94555 -13.81653 -13.69211 -13.42968 -13.18900 -13.07222 -12.79837 -12.36057 -12.24913 -12.17615 -12.08873 -11.89164 -11.85771 -11.55288 -11.12207 -11.07843 -10.41988 -10.26798 -9.47290 -8.94779 -4.90052 -0.96907 -0.49948 0.33694 0.82148 1.32853 1.59898 1.68494 1.77261 1.83548 2.02927 2.05507 2.54530 2.59957 2.82705 3.13789 3.35203 3.37304 3.43854 3.50909 3.55685 3.81867 3.83537 3.85621 4.06336 4.11767 4.19683 4.20235 4.31026 4.33174 4.42684 4.49479 4.53701 4.56339 4.64451 4.76026 4.79328 4.83887 4.86194 4.95029 5.12843 5.22814 5.28518 5.37814 5.43446 5.81623 6.14728 6.34329 6.84507 6.93765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.423 3.577 3 O -0.981 6.981 4 O -0.987 6.987 5 C -0.588 4.588 6 H 0.188 0.812 7 C -0.118 4.118 8 C 0.124 3.876 9 H 0.101 0.899 10 N -0.693 5.693 11 C 0.592 3.408 12 O -0.553 6.553 13 C 0.016 3.984 14 C -0.117 4.117 15 C -0.137 4.137 16 C -0.060 4.060 17 C -0.168 4.168 18 C -0.062 4.062 19 C -0.073 4.073 20 O -0.562 6.562 21 Si 0.771 3.229 22 C -0.101 4.101 23 C 0.112 3.888 24 N -0.558 5.558 25 C -0.125 4.125 26 H 0.150 0.850 27 H 0.130 0.870 28 H 0.153 0.847 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.415 0.585 32 H 0.156 0.844 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.404 0.596 37 H -0.290 1.290 38 H -0.300 1.300 39 H 0.148 0.852 40 H 0.435 0.565 41 H 0.105 0.895 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 -8.427 -0.334 9.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.611 3.389 3 O -0.978 6.978 4 O -0.984 6.984 5 C -0.699 4.699 6 H 0.205 0.795 7 C -0.157 4.157 8 C 0.018 3.982 9 H 0.119 0.881 10 N -0.344 5.344 11 C 0.379 3.621 12 O -0.431 6.431 13 C -0.094 4.094 14 C -0.144 4.144 15 C -0.142 4.142 16 C -0.078 4.078 17 C -0.186 4.186 18 C -0.064 4.064 19 C -0.183 4.183 20 O -0.373 6.373 21 Si 0.678 3.322 22 C -0.121 4.121 23 C 0.001 3.999 24 N -0.165 5.165 25 C -0.165 4.165 26 H 0.168 0.832 27 H 0.149 0.851 28 H 0.171 0.829 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.252 0.748 32 H 0.174 0.826 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.118 0.882 36 H 0.256 0.744 37 H -0.218 1.218 38 H -0.228 1.228 39 H 0.166 0.834 40 H 0.277 0.723 41 H 0.123 0.877 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.080 -6.433 -0.209 7.135 hybrid contribution -0.419 -0.097 -0.283 0.515 sum -3.499 -6.530 -0.492 7.425 Atomic orbital electron populations 1.30109 1.22593 1.13797 1.13001 1.07452 0.79753 0.74411 0.77270 1.93563 1.80924 1.36245 1.87043 1.93555 1.80948 1.67695 1.56217 1.31750 1.06906 1.13324 1.17904 0.79474 1.23090 0.91889 1.05905 0.94843 1.21760 0.98040 0.88375 0.90048 0.88132 1.45343 1.70000 1.14475 1.04616 1.17170 0.76657 0.86070 0.82183 1.90885 1.48621 1.28608 1.74940 1.19931 1.10012 0.85510 0.93913 1.21086 1.03351 0.96932 0.93052 1.18378 1.07795 0.94312 0.93682 1.20531 0.96685 0.94258 0.96375 1.20509 1.05440 0.95074 0.97589 1.19422 0.98995 0.95336 0.92598 1.24741 0.88249 0.93705 1.11641 1.86435 1.31336 1.35868 1.83612 0.94554 0.77202 0.87821 0.72625 1.20038 1.02690 0.91067 0.98327 1.18401 1.01971 0.92747 0.86750 1.41727 1.59235 1.06994 1.08529 1.23332 1.00424 0.98850 0.93883 0.83202 0.85136 0.82852 0.87381 0.87070 0.74812 0.82611 0.84015 0.86410 0.88246 0.74430 1.21758 1.22803 0.83387 0.72350 0.87671 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.05 10.62 113.37 1.20 8.25 16 2 S 2.42 -9.81 5.30 -56.49 -0.30 -10.11 16 3 O -0.98 -4.69 17.35 -127.37 -2.21 -6.89 16 4 O -0.99 -4.98 18.10 -127.37 -2.31 -7.29 16 5 C -0.59 6.16 4.05 31.21 0.13 6.29 16 6 H 0.19 -3.39 8.14 -2.39 -0.02 -3.41 16 7 C -0.12 0.90 7.41 31.12 0.23 1.13 16 8 C 0.12 -0.62 4.30 45.52 0.20 -0.42 16 9 H 0.10 -0.06 7.50 -2.39 -0.02 -0.08 16 10 N -0.69 4.14 5.26 -443.64 -2.33 1.80 16 11 C 0.59 1.23 7.80 86.56 0.68 1.90 16 12 O -0.55 -5.86 16.46 -4.18 -0.07 -5.93 16 13 C 0.02 0.03 6.96 39.91 0.28 0.30 16 14 C -0.12 -0.60 10.53 22.55 0.24 -0.36 16 15 C -0.14 -0.75 6.16 -21.36 -0.13 -0.88 16 16 C -0.06 -0.30 10.06 22.30 0.22 -0.08 16 17 C -0.17 -0.87 8.59 22.02 0.19 -0.68 16 18 C -0.06 -0.19 5.43 -19.83 -0.11 -0.30 16 19 C -0.07 0.20 2.80 71.23 0.20 0.40 16 20 O -0.56 1.67 12.73 -148.98 -1.90 -0.22 16 21 Si 0.77 -2.26 29.75 68.60 2.04 -0.22 16 22 C -0.10 -0.14 9.61 22.37 0.22 0.08 16 23 C 0.11 0.25 7.25 39.13 0.28 0.54 16 24 N -0.56 1.76 6.07 -177.19 -1.08 0.68 16 25 C -0.13 1.00 7.44 31.21 0.23 1.23 16 26 H 0.15 -2.17 8.14 -2.39 -0.02 -2.19 16 27 H 0.13 -1.29 8.14 -2.39 -0.02 -1.31 16 28 H 0.15 -2.41 8.14 -2.38 -0.02 -2.43 16 29 H 0.11 -0.66 8.10 -2.39 -0.02 -0.68 16 30 H 0.11 -1.18 8.14 -2.39 -0.02 -1.20 16 31 H 0.41 -5.38 7.76 -92.70 -0.72 -6.10 16 32 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 33 H 0.14 0.21 8.06 -2.91 -0.02 0.18 16 34 H 0.12 0.53 4.82 -2.91 -0.01 0.51 16 35 H 0.10 -0.72 7.96 -2.38 -0.02 -0.74 16 36 H 0.40 -5.40 8.74 -74.06 -0.65 -6.05 16 37 H -0.29 -0.82 7.11 99.48 0.71 -0.11 16 38 H -0.30 -1.58 7.11 99.48 0.71 -0.87 16 39 H 0.15 -0.46 8.06 -2.91 -0.02 -0.48 16 40 H 0.43 -4.85 8.12 -92.71 -0.75 -5.60 16 41 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H 0.11 -0.77 7.49 -2.39 -0.02 -0.78 16 Total: 0.00 -37.42 367.77 -5.08 -42.49 By element: Atomic # 1 Polarization: -30.74 SS G_CDS: -0.98 Total: -31.72 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 4.05 Total: 17.41 kcal Atomic # 7 Polarization: 5.90 SS G_CDS: -3.41 Total: 2.49 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -6.48 Total: -20.34 kcal Atomic # 14 Polarization: -2.26 SS G_CDS: 2.04 Total: -0.22 kcal Atomic # 16 Polarization: -9.81 SS G_CDS: -0.30 Total: -10.11 kcal Total: -37.42 -5.08 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12912156_13158378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.766 kcal (2) G-P(sol) polarization free energy of solvation -37.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds