Wall clock time and date at job start Sat Mar 6 2021 23:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86308 * 109.47162 * 2 1 4 4 C 1.50703 * 109.46923 * 240.00238 * 2 1 3 5 5 C 1.36447 * 120.29547 * 239.99476 * 4 2 1 6 6 C 1.40085 * 119.25459 * 179.97438 * 5 4 2 7 7 C 1.40860 * 132.86641 * 179.97438 * 6 5 4 8 8 C 1.46568 * 126.57727 * 359.97438 * 7 6 5 9 9 O 1.21717 * 120.00025 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99820 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99959 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46666 * 182.14134 * 11 10 8 13 13 C 1.50696 * 112.85136 * 305.77765 * 12 11 10 14 14 C 1.38236 * 119.99608 * 101.76057 * 13 12 11 15 15 C 1.38241 * 119.99641 * 179.79039 * 14 13 12 16 16 C 1.38230 * 120.00196 * 0.45674 * 15 14 13 17 17 C 1.38240 * 119.99684 * 359.77097 * 16 15 14 18 18 C 1.38229 * 120.00338 * 0.02562 * 17 16 15 19 19 C 1.53787 * 113.60871 * 174.58625 * 12 11 10 20 20 C 1.53788 * 87.17080 * 270.75725 * 19 12 11 21 21 H 1.08997 * 113.61451 * 220.05990 * 20 19 12 22 22 O 1.42900 * 113.61184 * 89.15978 * 20 19 12 23 23 C 1.53783 * 113.68990 * 77.05461 * 12 11 10 24 24 C 1.40558 * 106.84003 * 180.24827 * 7 6 5 25 25 N 1.30738 * 108.74120 * 359.61831 * 24 7 6 26 26 N 1.36575 * 120.23387 * 0.02562 * 6 5 4 27 27 C 1.36245 * 120.07760 * 359.97438 * 26 6 5 28 28 C 1.35186 * 120.70488 * 0.02562 * 27 26 6 29 29 H 0.96698 * 114.00424 * 59.99705 * 1 2 3 30 30 H 1.09000 * 109.47791 * 119.99967 * 2 1 3 31 31 H 1.48495 * 109.99754 * 60.00433 * 3 2 1 32 32 H 1.48499 * 109.99773 * 181.32184 * 3 2 1 33 33 H 1.07998 * 120.37343 * 359.96079 * 5 4 2 34 34 H 0.97001 * 119.99888 * 0.02562 * 10 8 7 35 35 H 1.08993 * 109.47081 * 62.14346 * 11 10 8 36 36 H 1.09004 * 109.46763 * 302.14213 * 11 10 8 37 37 H 1.08004 * 120.00416 * 359.97438 * 14 13 12 38 38 H 1.08003 * 119.99370 * 180.24765 * 15 14 13 39 39 H 1.07996 * 120.00345 * 179.79684 * 16 15 14 40 40 H 1.08002 * 119.99406 * 179.97438 * 17 16 15 41 41 H 1.07997 * 120.00486 * 179.97438 * 18 17 16 42 42 H 1.09001 * 113.61378 * 25.34398 * 19 12 11 43 43 H 1.08999 * 113.61265 * 156.16861 * 19 12 11 44 44 H 0.96704 * 114.00019 * 179.97438 * 22 20 19 45 45 H 1.09003 * 113.60965 * 203.67476 * 23 12 11 46 46 H 1.09000 * 113.60975 * 334.48572 * 23 12 11 47 47 H 1.07997 * 125.62615 * 179.73857 * 24 7 6 48 48 H 1.08005 * 119.64673 * 180.02562 * 27 26 6 49 49 H 1.08004 * 119.83863 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7161 -1.8202 -1.1124 6 6 3.1705 -2.4638 -2.2707 7 6 3.9749 -3.6006 -2.4825 8 6 4.5769 -4.4491 -1.4502 9 8 4.3991 -4.1947 -0.2732 10 7 5.3283 -5.5106 -1.8041 11 6 5.9297 -6.3591 -0.7722 12 6 6.7694 -7.4521 -1.4364 13 6 5.9928 -8.2513 -2.4510 14 6 6.1539 -7.9980 -3.8003 15 6 5.4448 -8.7341 -4.7312 16 6 4.5677 -9.7169 -4.3123 17 6 4.4031 -9.9669 -2.9627 18 6 5.1153 -9.2338 -2.0321 19 6 7.5524 -8.3200 -0.4371 20 6 8.6949 -7.2981 -0.5616 21 1 9.6854 -7.7519 -0.5903 22 8 8.6035 -6.2207 0.3726 23 6 8.1307 -6.9574 -1.9530 24 6 4.0945 -3.7614 -3.8737 25 7 3.4168 -2.8131 -4.4660 26 7 2.8304 -1.9830 -3.5030 27 6 2.0462 -0.8741 -3.6106 28 6 1.5963 -0.2369 -2.5065 29 1 -0.3934 0.4417 -0.7650 30 1 1.7924 -0.5138 0.8899 31 1 1.5616 2.4678 1.2085 32 1 3.5346 1.7703 -0.0322 33 1 2.9843 -2.1982 -0.1369 34 1 5.4709 -5.7127 -2.7420 35 1 5.1420 -6.8184 -0.1751 36 1 6.5666 -5.7522 -0.1286 37 1 6.8360 -7.2271 -4.1275 38 1 5.5737 -8.5389 -5.7856 39 1 4.0113 -10.2897 -5.0394 40 1 3.7175 -10.7346 -2.6355 41 1 4.9864 -9.4288 -0.9777 42 1 7.1041 -8.3548 0.5558 43 1 7.8062 -9.3077 -0.8219 44 1 9.3195 -5.5748 0.2995 45 1 8.5438 -7.5721 -2.7527 46 1 8.1488 -5.8925 -2.1852 47 1 4.6524 -4.5408 -4.3712 48 1 1.7811 -0.5001 -4.5886 49 1 0.9758 0.6412 -2.6081 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_11618758.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:22:12 Heat of formation + Delta-G solvation = 46.240693 kcal Electronic energy + Delta-G solvation = -34750.144001 eV Core-core repulsion = 30225.528241 eV Total energy + Delta-G solvation = -4524.615760 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.157 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.33902 -41.84759 -40.17941 -39.33129 -39.24270 -37.22238 -36.40295 -35.02117 -34.22037 -32.11731 -31.86640 -31.74165 -30.66937 -28.56579 -27.15749 -26.90087 -25.14691 -24.57669 -23.62431 -23.17762 -22.98451 -22.32364 -21.31759 -20.03530 -19.04623 -18.58001 -18.47677 -17.85822 -17.73468 -17.53490 -17.04446 -16.90533 -16.50812 -16.34528 -15.93860 -15.89624 -15.81484 -15.56906 -15.39539 -15.22384 -14.81089 -14.50839 -14.50548 -14.27360 -14.20910 -14.04097 -13.98038 -13.67161 -13.50767 -13.15943 -13.10664 -13.05413 -12.71445 -12.42052 -12.25948 -12.19112 -12.02673 -11.87478 -11.70226 -11.59665 -11.15448 -11.06756 -10.80094 -10.69097 -10.27570 -10.12228 -9.82172 -9.62261 -8.82834 -5.07911 -0.59230 -0.13086 0.42481 0.49038 0.96384 1.02586 1.19478 1.67740 1.95603 2.06014 2.16203 2.44622 2.83961 3.04547 3.14097 3.20700 3.40982 3.44514 3.52267 3.59170 3.67290 3.72355 3.76475 3.85716 3.90030 4.01277 4.13146 4.16199 4.18368 4.28597 4.34890 4.36625 4.43255 4.55321 4.60628 4.63586 4.71445 4.74434 4.75955 4.83247 4.88155 4.99458 5.07124 5.09689 5.13361 5.15038 5.17133 5.20410 5.25445 5.40914 5.59506 5.64480 5.65313 5.67390 6.10648 6.24979 6.53254 6.76647 6.85943 7.22798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.079 4.079 3 Si 0.820 3.180 4 C -0.052 4.052 5 C -0.136 4.136 6 C 0.152 3.848 7 C -0.348 4.348 8 C 0.594 3.406 9 O -0.596 6.596 10 N -0.708 5.708 11 C 0.153 3.847 12 C -0.045 4.045 13 C -0.072 4.072 14 C -0.123 4.123 15 C -0.120 4.120 16 C -0.133 4.133 17 C -0.129 4.129 18 C -0.126 4.126 19 C -0.118 4.118 20 C 0.078 3.922 21 H 0.089 0.911 22 O -0.569 6.569 23 C -0.150 4.150 24 C 0.130 3.870 25 N -0.333 5.333 26 N -0.272 5.272 27 C 0.115 3.885 28 C -0.145 4.145 29 H 0.401 0.599 30 H 0.104 0.896 31 H -0.289 1.289 32 H -0.303 1.303 33 H 0.135 0.865 34 H 0.407 0.593 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.068 0.932 43 H 0.113 0.887 44 H 0.396 0.604 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.226 0.774 48 H 0.216 0.784 49 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 3.117 -7.700 8.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.186 4.186 3 Si 0.723 3.277 4 C -0.058 4.058 5 C -0.156 4.156 6 C 0.031 3.969 7 C -0.362 4.362 8 C 0.384 3.616 9 O -0.479 6.479 10 N -0.359 5.359 11 C 0.029 3.971 12 C -0.045 4.045 13 C -0.073 4.073 14 C -0.141 4.141 15 C -0.138 4.138 16 C -0.151 4.151 17 C -0.147 4.147 18 C -0.144 4.144 19 C -0.156 4.156 20 C 0.019 3.981 21 H 0.106 0.894 22 O -0.377 6.377 23 C -0.188 4.188 24 C -0.050 4.050 25 N -0.153 5.153 26 N -0.036 5.036 27 C -0.010 4.010 28 C -0.165 4.165 29 H 0.252 0.748 30 H 0.121 0.879 31 H -0.216 1.216 32 H -0.231 1.231 33 H 0.153 0.847 34 H 0.244 0.756 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.246 0.754 45 H 0.129 0.871 46 H 0.097 0.903 47 H 0.242 0.758 48 H 0.233 0.767 49 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.242 3.616 -6.977 7.862 hybrid contribution 0.917 -1.386 0.934 1.906 sum 1.158 2.231 -6.043 6.545 Atomic orbital electron populations 1.86585 1.15886 1.82303 1.50747 1.25367 0.86018 1.11390 0.95868 0.93867 0.76850 0.71999 0.84979 1.20787 0.93959 0.93397 0.97675 1.20631 1.01169 0.96691 0.97128 1.19422 0.95991 0.94461 0.87047 1.19687 1.17695 1.04586 0.94252 1.17104 0.77512 0.79963 0.86977 1.90748 1.63467 1.73304 1.20383 1.45484 1.51731 1.27982 1.10734 1.21057 0.95401 0.90900 0.89722 1.20795 0.93620 0.94660 0.95461 1.19650 0.97189 0.96314 0.94106 1.21260 1.00400 1.00605 0.91840 1.21450 0.96053 0.95604 1.00658 1.21448 0.99052 0.98656 0.95984 1.21370 0.99662 0.99952 0.93708 1.21115 0.96889 0.96578 0.99839 1.23158 0.95406 0.97939 0.99119 1.22757 0.98530 0.88391 0.88440 0.89358 1.86452 1.54349 1.38429 1.58509 1.23781 0.93989 1.02649 0.98369 1.24439 0.93703 0.95827 0.91076 1.77536 1.19340 1.07218 1.11224 1.46377 1.32481 1.19758 1.04942 1.22518 0.90515 0.83769 1.04187 1.21376 1.03424 1.03599 0.88095 0.74757 0.87882 1.21627 1.23064 0.84720 0.75637 0.93801 0.90165 0.84044 0.84048 0.84970 0.85451 0.86466 0.91316 0.86919 0.75401 0.87112 0.90337 0.75783 0.76729 0.75917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.42 12.87 -148.98 -1.92 -0.49 16 2 C -0.08 0.13 2.84 71.24 0.20 0.33 16 3 Si 0.82 -3.81 31.96 68.60 2.19 -1.61 16 4 C -0.05 0.02 4.53 -19.82 -0.09 -0.07 16 5 C -0.14 -1.11 9.35 22.30 0.21 -0.90 16 6 C 0.15 1.45 6.76 39.50 0.27 1.72 16 7 C -0.35 -3.43 6.17 -19.90 -0.12 -3.56 16 8 C 0.59 7.63 7.78 86.42 0.67 8.31 16 9 O -0.60 -12.43 15.71 -4.40 -0.07 -12.50 16 10 N -0.71 -4.19 5.34 -467.16 -2.49 -6.68 16 11 C 0.15 1.00 4.94 86.38 0.43 1.43 16 12 C -0.04 -0.01 0.73 -52.40 -0.04 -0.04 16 13 C -0.07 -0.03 4.24 -19.87 -0.08 -0.11 16 14 C -0.12 0.28 8.08 22.27 0.18 0.46 16 15 C -0.12 0.22 10.05 22.27 0.22 0.44 16 16 C -0.13 -0.03 10.05 22.27 0.22 0.20 16 17 C -0.13 -0.25 10.05 22.27 0.22 -0.02 16 18 C -0.13 -0.33 9.38 22.27 0.21 -0.12 16 19 C -0.12 0.04 6.67 31.12 0.21 0.24 16 20 C 0.08 -0.16 5.29 31.18 0.16 0.01 16 21 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 22 O -0.57 -0.87 11.53 -148.98 -1.72 -2.59 16 23 C -0.15 0.55 6.05 31.18 0.19 0.74 16 24 C 0.13 0.55 11.44 85.42 0.98 1.53 16 25 N -0.33 -2.05 12.57 -56.62 -0.71 -2.76 16 26 N -0.27 -1.31 3.86 -187.27 -0.72 -2.04 16 27 C 0.12 -0.54 11.17 83.30 0.93 0.39 16 28 C -0.14 1.20 8.38 22.03 0.18 1.39 16 29 H 0.40 -5.60 8.08 -74.06 -0.60 -6.20 16 30 H 0.10 0.23 7.71 -2.39 -0.02 0.21 16 31 H -0.29 -0.72 7.11 99.48 0.71 -0.01 16 32 H -0.30 -1.05 7.11 99.48 0.71 -0.35 16 33 H 0.13 1.68 7.01 -2.91 -0.02 1.66 16 34 H 0.41 0.22 6.02 -92.71 -0.56 -0.33 16 35 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.83 5.97 -2.39 -0.01 0.81 16 37 H 0.14 -0.95 7.09 -2.91 -0.02 -0.97 16 38 H 0.14 -0.84 8.06 -2.91 -0.02 -0.86 16 39 H 0.13 -0.36 8.06 -2.91 -0.02 -0.39 16 40 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 41 H 0.12 0.28 8.01 -2.91 -0.02 0.25 16 42 H 0.07 0.19 8.10 -2.39 -0.02 0.17 16 43 H 0.11 -0.30 8.09 -2.39 -0.02 -0.32 16 44 H 0.40 -2.33 9.12 -74.05 -0.68 -3.01 16 45 H 0.11 -0.71 7.51 -2.39 -0.02 -0.73 16 46 H 0.08 -0.25 8.10 -2.39 -0.02 -0.26 16 47 H 0.23 -0.98 7.46 -2.91 -0.02 -1.01 16 48 H 0.22 -2.70 8.06 -2.91 -0.02 -2.72 16 49 H 0.22 -4.57 7.31 -2.91 -0.02 -4.59 16 Total: 0.00 -34.01 406.08 -1.05 -35.06 By element: Atomic # 1 Polarization: -17.98 SS G_CDS: -0.77 Total: -18.75 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.16 Total: 12.36 kcal Atomic # 7 Polarization: -7.55 SS G_CDS: -3.93 Total: -11.48 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -3.71 Total: -15.58 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: 2.19 Total: -1.61 kcal Total: -34.01 -1.05 -35.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_11618758.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.302 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds