Wall clock time and date at job start Sat Mar 6 2021 23:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35659 * 117.00183 * 2 1 4 4 C 1.38409 * 120.12176 * 0.28079 * 3 2 1 5 5 C 1.38719 * 120.03109 * 180.25514 * 4 3 2 6 6 O 1.35718 * 119.86194 * 179.76442 * 5 4 3 7 7 C 1.42901 * 117.00018 * 359.97411 * 6 5 4 8 8 C 1.39142 * 120.27740 * 359.74287 * 5 4 3 9 9 C 1.50704 * 119.88296 * 180.02562 * 8 5 4 10 10 O 1.42901 * 109.46694 * 284.97624 * 9 8 5 11 11 Si 1.86296 * 109.47182 * 164.97564 * 9 8 5 12 12 C 1.37586 * 120.23947 * 359.97438 * 8 5 4 13 13 C 1.39822 * 119.96241 * 0.02728 * 12 8 5 14 14 C 1.47301 * 120.13351 * 179.97438 * 13 12 8 15 15 O 1.21619 * 120.00086 * 179.97438 * 14 13 12 16 16 N 1.34778 * 119.99841 * 359.97438 * 14 13 12 17 17 C 1.46510 * 119.99729 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47016 * 182.09863 * 17 16 14 19 19 C 1.50706 * 112.84786 * 305.58347 * 18 17 16 20 20 C 1.38238 * 120.00109 * 103.63797 * 19 18 17 21 21 C 1.38228 * 120.00064 * 179.76431 * 20 19 18 22 22 C 1.38244 * 119.99977 * 0.48789 * 21 20 19 23 23 C 1.38236 * 119.99550 * 359.78644 * 22 21 20 24 24 C 1.38226 * 120.00372 * 359.96038 * 23 22 21 25 25 C 1.53773 * 113.61312 * 174.38904 * 18 17 16 26 26 C 1.53777 * 87.08226 * 270.79711 * 25 18 17 27 27 H 1.09000 * 113.61500 * 220.02206 * 26 25 18 28 28 O 1.42897 * 113.61484 * 89.19756 * 26 25 18 29 29 C 1.53781 * 113.69290 * 76.84824 * 18 17 16 30 30 H 1.09001 * 109.46851 * 300.00468 * 1 2 3 31 31 H 1.09001 * 109.47203 * 59.99378 * 1 2 3 32 32 H 1.09000 * 109.47350 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.97671 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.46848 * 60.00356 * 7 6 5 35 35 H 1.08998 * 109.47384 * 180.02562 * 7 6 5 36 36 H 1.08999 * 109.47142 * 300.00613 * 7 6 5 37 37 H 1.09003 * 109.46778 * 44.97408 * 9 8 5 38 38 H 0.96695 * 113.99889 * 60.00394 * 10 9 8 39 39 H 1.48502 * 110.00126 * 299.99978 * 11 9 8 40 40 H 1.48494 * 110.00158 * 61.31634 * 11 9 8 41 41 H 1.07995 * 120.01771 * 180.02562 * 12 8 5 42 42 H 0.97000 * 120.00420 * 0.02562 * 16 14 13 43 43 H 1.08995 * 109.46731 * 62.09623 * 17 16 14 44 44 H 1.08999 * 109.47111 * 302.09774 * 17 16 14 45 45 H 1.08003 * 119.99427 * 0.02562 * 20 19 18 46 46 H 1.07998 * 120.00405 * 180.25034 * 21 20 19 47 47 H 1.08000 * 120.00244 * 179.76525 * 22 21 20 48 48 H 1.08007 * 119.99403 * 179.97438 * 23 22 21 49 49 H 1.08006 * 120.00210 * 179.97438 * 24 23 22 50 50 H 1.09005 * 113.61493 * 156.25230 * 25 18 17 51 51 H 1.08998 * 113.69616 * 25.35843 * 25 18 17 52 52 H 0.96702 * 114.00016 * 181.52846 * 28 26 25 53 53 H 1.09000 * 113.61508 * 334.58151 * 29 18 17 54 54 H 1.08999 * 113.61567 * 203.67486 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2936 2.3711 0.0059 5 6 1.9253 3.6061 0.0005 6 8 1.1852 4.7437 0.0014 7 6 -0.2358 4.5932 0.0075 8 6 3.3146 3.6834 -0.0054 9 6 3.9916 5.0298 -0.0106 10 8 3.8891 5.6094 -1.3128 11 14 5.7880 4.8233 0.4377 12 6 4.0724 2.5351 -0.0054 13 6 3.4461 1.2850 -0.0001 14 6 4.2539 0.0533 -0.0006 15 8 3.7066 -1.0328 0.0045 16 7 5.5994 0.1298 -0.0068 17 6 6.4028 -1.0954 -0.0068 18 6 7.8882 -0.7313 0.0384 19 6 8.2932 0.2122 -1.0649 20 6 8.5011 1.5505 -0.7882 21 6 8.8773 2.4149 -1.7991 22 6 9.0359 1.9430 -3.0888 23 6 8.8225 0.6057 -3.3665 24 6 8.4513 -0.2597 -2.3545 25 6 8.8168 -1.9488 0.1796 26 6 8.6767 -1.7802 1.7017 27 1 9.6063 -1.9446 2.2466 28 8 7.5731 -2.4975 2.2579 29 6 8.3758 -0.2966 1.4305 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2150 2.3165 0.0100 34 1 -0.5394 4.0456 0.8998 35 1 -0.7054 5.5769 0.0072 36 1 -0.5466 4.0423 -0.8802 37 1 3.5083 5.6823 0.7166 38 1 2.9799 5.7461 -1.6119 39 1 5.9081 4.2213 1.7899 40 1 6.4656 3.9614 -0.5639 41 1 5.1505 2.5993 -0.0096 42 1 6.0360 0.9960 -0.0105 43 1 6.1958 -1.6655 -0.9124 44 1 6.1493 -1.6961 0.8666 45 1 8.3736 1.9199 0.2187 46 1 9.0437 3.4598 -1.5823 47 1 9.3261 2.6190 -3.8794 48 1 8.9459 0.2371 -4.3741 49 1 8.2842 -1.3044 -2.5716 50 1 9.8276 -1.7719 -0.1880 51 1 8.3849 -2.8753 -0.1986 52 1 7.4658 -2.3767 3.2113 53 1 7.5865 0.1113 2.0620 54 1 9.2660 0.3319 1.4048 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_12297780.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:22:20 Heat of formation + Delta-G solvation = -96.205951 kcal Electronic energy + Delta-G solvation = -39951.582449 eV Core-core repulsion = 35015.191840 eV Total energy + Delta-G solvation = -4936.390610 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.181 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.32403 -41.82534 -40.53828 -39.89440 -39.33304 -38.46112 -37.05536 -36.45964 -35.12904 -32.36331 -32.15590 -31.90193 -31.72203 -29.09253 -28.89822 -27.94154 -26.99877 -26.14373 -25.09556 -24.30626 -23.26070 -22.91883 -22.37036 -21.59559 -20.38199 -19.90395 -18.75229 -18.68764 -18.54800 -17.90810 -17.74458 -17.41240 -17.27075 -16.79054 -16.70460 -16.49321 -16.44064 -16.03286 -15.98002 -15.86024 -15.70874 -15.45263 -15.31063 -15.12483 -14.61207 -14.42114 -14.33664 -14.26299 -14.10595 -13.96393 -13.71319 -13.63720 -13.43930 -13.15489 -13.09717 -12.76129 -12.70916 -12.61302 -12.60700 -12.26055 -12.21003 -11.95959 -11.79970 -11.75614 -11.41545 -11.21363 -11.20390 -10.95060 -10.74123 -10.24550 -10.06688 -9.87639 -9.67612 -9.33117 -4.84071 -0.44894 -0.07973 0.36799 0.43239 1.34411 1.55108 1.65966 1.92102 1.94033 1.95068 2.05225 2.44076 2.78403 3.09199 3.25446 3.33853 3.39265 3.44549 3.53935 3.61411 3.62168 3.70590 3.91305 3.94254 3.94550 4.05031 4.05910 4.10780 4.12905 4.20657 4.22198 4.23602 4.26956 4.35699 4.38270 4.48826 4.55164 4.57205 4.61907 4.64491 4.65798 4.69582 4.75662 4.78586 4.81296 4.88301 4.93277 5.04182 5.08260 5.09940 5.11739 5.15286 5.27267 5.53829 5.59001 5.60687 5.88830 6.04844 6.14872 6.32203 6.62402 6.82740 7.04860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.305 6.305 3 C 0.218 3.782 4 C -0.303 4.303 5 C 0.212 3.788 6 O -0.309 6.309 7 C 0.011 3.989 8 C -0.198 4.198 9 C -0.078 4.078 10 O -0.545 6.545 11 Si 0.783 3.217 12 C -0.014 4.014 13 C -0.231 4.231 14 C 0.558 3.442 15 O -0.560 6.560 16 N -0.717 5.717 17 C 0.150 3.850 18 C -0.050 4.050 19 C -0.074 4.074 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.113 4.113 26 C 0.081 3.919 27 H 0.091 0.909 28 O -0.568 6.568 29 C -0.156 4.156 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.172 0.828 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.373 0.627 39 H -0.260 1.260 40 H -0.261 1.261 41 H 0.138 0.862 42 H 0.400 0.600 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.131 0.869 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.133 0.867 49 H 0.122 0.878 50 H 0.115 0.885 51 H 0.072 0.928 52 H 0.396 0.604 53 H 0.073 0.927 54 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 6.859 2.337 7.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.216 6.216 3 C 0.168 3.832 4 C -0.322 4.322 5 C 0.164 3.836 6 O -0.221 6.221 7 C -0.083 4.083 8 C -0.199 4.199 9 C -0.185 4.185 10 O -0.351 6.351 11 Si 0.682 3.318 12 C -0.033 4.033 13 C -0.235 4.235 14 C 0.347 3.653 15 O -0.440 6.440 16 N -0.369 5.369 17 C 0.027 3.973 18 C -0.051 4.051 19 C -0.075 4.075 20 C -0.150 4.150 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.151 4.151 26 C 0.022 3.978 27 H 0.109 0.891 28 O -0.376 6.376 29 C -0.194 4.194 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.190 0.810 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.222 0.778 39 H -0.185 1.185 40 H -0.186 1.186 41 H 0.155 0.845 42 H 0.236 0.764 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.149 0.851 46 H 0.158 0.842 47 H 0.155 0.845 48 H 0.151 0.849 49 H 0.140 0.860 50 H 0.133 0.867 51 H 0.091 0.909 52 H 0.246 0.754 53 H 0.092 0.908 54 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.671 5.298 1.978 5.694 hybrid contribution -2.040 -0.439 0.098 2.089 sum -1.370 4.859 2.076 5.459 Atomic orbital electron populations 1.23528 0.76150 1.05982 1.02880 1.86375 1.23556 1.25700 1.85939 1.18914 0.90613 0.85162 0.88468 1.21484 1.02254 0.90483 1.17974 1.18780 0.90302 0.85395 0.89120 1.86048 1.21513 1.27920 1.86643 1.23546 0.75576 1.06417 1.02754 1.19676 0.91115 0.97010 1.12080 1.25323 1.14769 0.89777 0.88654 1.86676 1.32888 1.83330 1.32194 0.92656 0.74561 0.87106 0.77494 1.20814 0.99173 0.90119 0.93160 1.19191 0.91464 0.93506 1.19312 1.18099 0.82359 0.88599 0.76202 1.90805 1.72196 1.30030 1.50936 1.45792 1.05319 1.10388 1.75415 1.21149 0.87970 0.85875 1.02295 1.20865 0.93129 0.96676 0.94397 1.19660 0.99676 0.94063 0.94052 1.21222 1.00935 0.92776 1.00075 1.21465 0.98741 1.00675 0.93045 1.21468 0.99953 0.95940 0.97496 1.21410 0.99141 0.94012 0.99752 1.21134 1.00136 1.00284 0.92709 1.23128 1.00223 0.96827 0.94939 1.22700 0.89749 0.90550 0.94762 0.89089 1.86447 1.50574 1.71624 1.29005 1.23805 1.02587 0.98389 0.94618 0.90665 0.90794 0.86770 0.81034 0.91261 0.85381 0.91150 0.89647 0.77837 1.18545 1.18628 0.84469 0.76399 0.93222 0.89702 0.85107 0.84199 0.84522 0.84918 0.86021 0.86704 0.90938 0.75364 0.90817 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -3.49 8.56 -68.79 -0.59 -4.08 16 3 C 0.22 2.15 6.70 22.82 0.15 2.30 16 4 C -0.30 -0.99 8.01 22.43 0.18 -0.82 16 5 C 0.21 0.69 6.62 22.60 0.15 0.84 16 6 O -0.31 0.26 9.36 -90.40 -0.85 -0.58 16 7 C 0.01 -0.08 9.80 113.37 1.11 1.03 16 8 C -0.20 -1.01 5.28 -19.80 -0.10 -1.11 16 9 C -0.08 -0.13 2.32 71.24 0.17 0.03 16 10 O -0.54 -1.56 12.65 -148.98 -1.89 -3.45 16 11 Si 0.78 -0.84 30.39 68.60 2.09 1.25 16 12 C -0.01 -0.11 8.14 22.50 0.18 0.08 16 13 C -0.23 -2.70 5.89 -20.00 -0.12 -2.82 16 14 C 0.56 8.55 7.76 86.63 0.67 9.22 16 15 O -0.56 -12.64 15.15 16.87 0.26 -12.39 16 16 N -0.72 -6.83 5.30 -466.48 -2.47 -9.31 16 17 C 0.15 1.28 4.94 86.38 0.43 1.70 16 18 C -0.05 -0.11 0.72 -52.40 -0.04 -0.15 16 19 C -0.07 -0.22 4.20 -19.86 -0.08 -0.31 16 20 C -0.13 -0.23 8.20 22.27 0.18 -0.04 16 21 C -0.12 -0.19 10.05 22.27 0.22 0.03 16 22 C -0.13 -0.28 10.05 22.27 0.22 -0.06 16 23 C -0.13 -0.39 10.05 22.27 0.22 -0.17 16 24 C -0.12 -0.51 9.40 22.27 0.21 -0.30 16 25 C -0.11 -0.05 6.75 31.12 0.21 0.16 16 26 C 0.08 -0.09 5.27 31.12 0.16 0.07 16 27 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 28 O -0.57 -1.22 11.53 -148.98 -1.72 -2.94 16 29 C -0.16 0.23 6.05 31.12 0.19 0.42 16 30 H 0.07 -0.28 7.65 -2.39 -0.02 -0.30 16 31 H 0.07 -0.25 7.67 -2.39 -0.02 -0.27 16 32 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.17 -0.55 4.50 -2.91 -0.01 -0.56 16 34 H 0.07 -0.63 7.65 -2.39 -0.02 -0.64 16 35 H 0.13 -1.47 8.14 -2.39 -0.02 -1.49 16 36 H 0.07 -0.65 7.65 -2.39 -0.02 -0.67 16 37 H 0.09 -0.05 7.82 -2.39 -0.02 -0.07 16 38 H 0.37 -0.37 8.59 -74.06 -0.64 -1.01 16 39 H -0.26 -0.30 7.11 99.48 0.71 0.41 16 40 H -0.26 -0.53 6.80 99.48 0.68 0.14 16 41 H 0.14 0.72 3.24 -2.91 -0.01 0.72 16 42 H 0.40 2.52 5.23 -92.71 -0.49 2.03 16 43 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 0.98 5.96 -2.39 -0.01 0.96 16 45 H 0.13 -0.20 6.98 -2.91 -0.02 -0.22 16 46 H 0.14 -0.32 8.06 -2.91 -0.02 -0.35 16 47 H 0.14 -0.19 8.06 -2.91 -0.02 -0.22 16 48 H 0.13 0.02 8.06 -2.91 -0.02 -0.01 16 49 H 0.12 0.38 8.05 -2.91 -0.02 0.35 16 50 H 0.11 -0.25 8.09 -2.38 -0.02 -0.27 16 51 H 0.07 0.21 8.10 -2.39 -0.02 0.19 16 52 H 0.40 -2.08 9.12 -74.06 -0.68 -2.76 16 53 H 0.07 -0.03 8.10 -2.39 -0.02 -0.05 16 54 H 0.11 -0.47 7.40 -2.39 -0.02 -0.49 16 Total: 0.00 -24.35 431.37 -0.54 -24.90 By element: Atomic # 1 Polarization: -3.82 SS G_CDS: -0.81 Total: -4.63 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.44 Total: 11.23 kcal Atomic # 7 Polarization: -6.83 SS G_CDS: -2.47 Total: -9.31 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -4.78 Total: -23.44 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: 2.09 Total: 1.25 kcal Total: -24.35 -0.54 -24.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_12297780.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.310 kcal (2) G-P(sol) polarization free energy of solvation -24.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds