Wall clock time and date at job start Sat Mar 6 2021 23:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86304 * 109.47298 * 2 1 4 4 C 1.50698 * 109.47284 * 120.00355 * 2 1 3 5 5 C 1.38230 * 120.00446 * 64.99996 * 4 2 1 6 6 C 1.38233 * 120.00414 * 179.97438 * 5 4 2 7 7 C 1.38230 * 119.99843 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00061 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46970 * 89.99796 * 8 7 6 10 10 O 1.21276 * 119.99818 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99566 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99789 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47331 * 184.77979 * 12 11 9 14 14 C 1.50700 * 112.85018 * 294.75774 * 13 12 11 15 15 C 1.38238 * 120.00007 * 103.14131 * 14 13 12 16 16 C 1.38230 * 120.00203 * 180.02562 * 15 14 13 17 17 C 1.38231 * 120.00175 * 359.95607 * 16 15 14 18 18 C 1.38241 * 119.99881 * 0.28184 * 17 16 15 19 19 C 1.38232 * 120.00226 * 283.16732 * 14 13 12 20 20 C 1.53780 * 113.61888 * 163.56380 * 13 12 11 21 21 C 1.53789 * 87.08046 * 270.80133 * 20 13 12 22 22 H 1.08999 * 113.61086 * 220.01602 * 21 20 13 23 23 O 1.42901 * 113.61393 * 89.11284 * 21 20 13 24 24 C 1.53784 * 87.07867 * 334.56325 * 21 20 13 25 25 C 1.38235 * 119.99934 * 0.27630 * 7 6 5 26 26 C 1.38233 * 120.00279 * 359.51766 * 25 7 6 27 27 H 0.96709 * 113.99954 * 299.99647 * 1 2 3 28 28 H 1.09002 * 109.47187 * 239.99938 * 2 1 3 29 29 H 1.48500 * 109.99957 * 178.68335 * 3 2 1 30 30 H 1.48498 * 109.99826 * 300.00483 * 3 2 1 31 31 H 1.08007 * 119.99892 * 359.97343 * 5 4 2 32 32 H 1.07998 * 120.00246 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46899 * 330.00068 * 8 7 6 34 34 H 1.09001 * 109.47067 * 209.99990 * 8 7 6 35 35 H 0.96997 * 120.00503 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.47016 * 64.77381 * 12 11 9 37 37 H 1.08999 * 109.47262 * 304.78122 * 12 11 9 38 38 H 1.08005 * 119.99773 * 0.02562 * 15 14 13 39 39 H 1.08002 * 120.00318 * 179.97438 * 16 15 14 40 40 H 1.08000 * 120.00648 * 180.02562 * 17 16 15 41 41 H 1.07996 * 120.00210 * 179.72522 * 18 17 16 42 42 H 1.08001 * 120.00197 * 0.02562 * 19 14 13 43 43 H 1.09005 * 113.61067 * 25.34266 * 20 13 12 44 44 H 1.08994 * 113.61832 * 156.25031 * 20 13 12 45 45 H 0.96700 * 113.98999 * 179.97438 * 23 21 20 46 46 H 1.08997 * 113.61914 * 270.88841 * 24 21 20 47 47 H 1.08996 * 113.61169 * 139.97898 * 24 21 20 48 48 H 1.08007 * 119.99689 * 179.72681 * 25 7 6 49 49 H 1.07998 * 120.00115 * 180.27458 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6847 -2.0602 1.3983 6 6 2.1460 -2.7120 2.5267 7 6 2.8543 -2.0141 3.4869 8 6 3.3577 -2.7249 4.7168 9 6 4.7390 -3.2672 4.4536 10 8 5.2631 -3.0932 3.3739 11 7 5.3921 -3.9445 5.4185 12 6 6.7350 -4.4712 5.1629 13 6 7.1983 -5.2932 6.3672 14 6 7.3762 -4.4605 7.6106 15 6 6.4226 -4.4990 8.6107 16 6 6.5856 -3.7348 9.7509 17 6 7.7025 -2.9326 9.8916 18 6 8.6537 -2.8903 8.8894 19 6 8.4927 -3.6576 7.7508 20 6 8.3948 -6.2103 6.0637 21 6 7.3694 -7.2834 5.6609 22 1 7.6364 -8.2876 5.9899 23 8 6.9969 -7.2303 4.2823 24 6 6.3761 -6.5727 6.5952 25 6 3.0964 -0.6632 3.3215 26 6 2.6388 -0.0123 2.1911 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 3.5346 1.7702 0.0321 30 1 1.5614 2.4679 -1.2084 31 1 1.1317 -2.6056 0.6478 32 1 1.9530 -3.7665 2.6580 33 1 2.6853 -3.5469 4.9622 34 1 3.3952 -2.0246 5.5513 35 1 4.9730 -4.0833 6.2822 36 1 7.4252 -3.6433 5.0008 37 1 6.7140 -5.1054 4.2766 38 1 5.5503 -5.1263 8.5011 39 1 5.8404 -3.7646 10.5321 40 1 7.8301 -2.3358 10.7826 41 1 9.5242 -2.2602 8.9973 42 1 9.2374 -3.6268 6.9692 43 1 9.0118 -5.8631 5.2349 44 1 8.9782 -6.4733 6.9460 45 1 6.3526 -7.9030 4.0229 46 1 6.4077 -6.9346 7.6229 47 1 5.3635 -6.5179 6.1956 48 1 3.6460 -0.1171 4.0739 49 1 2.8318 1.0421 2.0598 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_12335836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:22:28 Heat of formation + Delta-G solvation = -35.910450 kcal Electronic energy + Delta-G solvation = -30892.652556 eV Core-core repulsion = 26751.778558 eV Total energy + Delta-G solvation = -4140.873998 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.90353 -40.96762 -39.96184 -39.26766 -37.64927 -36.39276 -34.99480 -34.02317 -31.94477 -31.85895 -31.73486 -30.22871 -28.21276 -26.94878 -25.69919 -24.49982 -23.81853 -23.18663 -22.42436 -22.13960 -21.30092 -19.93889 -18.58389 -18.44844 -18.06319 -17.71265 -17.37573 -16.91871 -16.58078 -16.35941 -16.23940 -16.00654 -15.74917 -15.63504 -15.55675 -15.21968 -14.79701 -14.72033 -14.56031 -14.39461 -14.23484 -14.10081 -14.04037 -13.62870 -13.28611 -13.22109 -13.06487 -12.95264 -12.80532 -12.70966 -12.26937 -12.18987 -12.02023 -11.88754 -11.72538 -11.69183 -11.15588 -11.01912 -10.68978 -10.44952 -10.06161 -9.88099 -9.80668 -9.64339 -9.59229 -5.05042 0.23334 0.43947 0.44676 0.50505 1.28489 1.61313 1.64754 1.92509 2.14196 2.77832 2.85107 3.13866 3.42175 3.50075 3.51502 3.62859 3.67918 3.77670 3.78458 3.89412 3.93119 4.04939 4.12165 4.16028 4.17211 4.29840 4.33543 4.42958 4.45946 4.48171 4.55795 4.59355 4.65078 4.70977 4.71971 4.74702 4.82579 4.89370 4.99165 5.01802 5.08085 5.10257 5.16577 5.19127 5.21163 5.36925 5.41699 5.52863 5.58727 5.60804 5.65833 5.68749 6.01073 6.12000 6.53996 6.75828 6.85725 7.26262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.074 4.074 3 Si 0.780 3.220 4 C -0.129 4.129 5 C -0.108 4.108 6 C -0.115 4.115 7 C -0.070 4.070 8 C -0.097 4.097 9 C 0.511 3.489 10 O -0.583 6.583 11 N -0.711 5.711 12 C 0.150 3.850 13 C -0.043 4.043 14 C -0.072 4.072 15 C -0.119 4.119 16 C -0.122 4.122 17 C -0.134 4.134 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.121 4.121 21 C 0.077 3.923 22 H 0.086 0.914 23 O -0.569 6.569 24 C -0.149 4.149 25 C -0.112 4.112 26 C -0.122 4.122 27 H 0.395 0.605 28 H 0.100 0.900 29 H -0.295 1.295 30 H -0.296 1.296 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.412 0.588 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.395 0.605 46 H 0.110 0.890 47 H 0.083 0.917 48 H 0.140 0.860 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -2.299 9.860 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.184 4.184 3 Si 0.687 3.313 4 C -0.129 4.129 5 C -0.126 4.126 6 C -0.133 4.133 7 C -0.071 4.071 8 C -0.136 4.136 9 C 0.298 3.702 10 O -0.462 6.462 11 N -0.364 5.364 12 C 0.026 3.974 13 C -0.044 4.044 14 C -0.072 4.072 15 C -0.137 4.137 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.146 4.146 20 C -0.159 4.159 21 C 0.018 3.982 22 H 0.103 0.897 23 O -0.377 6.377 24 C -0.186 4.186 25 C -0.130 4.130 26 C -0.139 4.139 27 H 0.245 0.755 28 H 0.118 0.882 29 H -0.222 1.222 30 H -0.224 1.224 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.248 0.752 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.128 0.872 45 H 0.246 0.754 46 H 0.128 0.872 47 H 0.102 0.898 48 H 0.158 0.842 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.304 -1.417 8.135 8.360 hybrid contribution 0.081 -1.019 -0.198 1.041 sum -1.223 -2.436 7.937 8.392 Atomic orbital electron populations 1.86459 1.17064 1.82228 1.50471 1.25164 0.85385 1.10857 0.97026 0.93775 0.77500 0.75408 0.84615 1.20403 1.00279 0.95172 0.97052 1.21097 0.99397 0.94207 0.97897 1.21230 0.97986 1.00255 0.93805 1.19560 0.97406 0.93975 0.96128 1.20754 0.92509 1.02800 0.97526 1.21058 0.88206 0.77414 0.83478 1.90745 1.69918 1.59178 1.26377 1.45779 1.17567 1.56210 1.16803 1.21011 0.83067 0.96163 0.97167 1.20776 0.98822 0.93159 0.91609 1.19657 0.94996 0.97345 0.95221 1.21244 0.99266 0.99816 0.93338 1.21451 0.98002 0.96231 0.98277 1.21446 0.94744 0.99605 0.99386 1.21365 0.99881 0.99356 0.94172 1.21119 0.98196 0.97158 0.98128 1.23172 0.95781 0.94998 1.01954 1.22720 0.95557 0.98373 0.81585 0.89655 1.86457 1.65907 1.60138 1.25207 1.23734 0.99134 0.94156 1.01596 1.21232 0.99122 0.94401 0.98214 1.21147 0.98565 1.00009 0.94170 0.75458 0.88225 1.22199 1.22416 0.85879 0.84949 0.85100 0.85163 0.75154 0.94051 0.90466 0.83941 0.84182 0.85024 0.85503 0.86568 0.91513 0.87168 0.75439 0.87220 0.89828 0.84239 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.63 12.83 -148.98 -1.91 -3.54 16 2 C -0.07 -0.25 2.80 71.24 0.20 -0.05 16 3 Si 0.78 0.88 29.80 68.60 2.04 2.93 16 4 C -0.13 -0.58 5.35 -19.87 -0.11 -0.69 16 5 C -0.11 -0.60 9.69 22.27 0.22 -0.39 16 6 C -0.11 -0.47 9.70 22.27 0.22 -0.25 16 7 C -0.07 -0.19 4.37 -19.86 -0.09 -0.27 16 8 C -0.10 0.31 5.83 29.11 0.17 0.48 16 9 C 0.51 2.09 7.82 87.66 0.69 2.78 16 10 O -0.58 -8.83 16.03 -3.02 -0.05 -8.87 16 11 N -0.71 0.42 5.20 -463.07 -2.41 -1.99 16 12 C 0.15 0.44 4.89 86.38 0.42 0.86 16 13 C -0.04 0.11 0.62 -52.40 -0.03 0.08 16 14 C -0.07 0.13 4.52 -19.87 -0.09 0.04 16 15 C -0.12 0.52 8.53 22.27 0.19 0.71 16 16 C -0.12 0.43 10.05 22.27 0.22 0.65 16 17 C -0.13 0.19 10.05 22.27 0.22 0.42 16 18 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 19 C -0.13 -0.09 9.39 22.27 0.21 0.12 16 20 C -0.12 0.22 6.72 31.12 0.21 0.43 16 21 C 0.08 -0.28 5.28 31.12 0.16 -0.12 16 22 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 23 O -0.57 0.10 11.52 -148.98 -1.72 -1.62 16 24 C -0.15 0.94 5.94 31.12 0.18 1.13 16 25 C -0.11 -0.30 9.70 22.27 0.22 -0.08 16 26 C -0.12 -0.34 8.67 22.27 0.19 -0.15 16 27 H 0.40 -2.22 8.70 -74.05 -0.64 -2.87 16 28 H 0.10 0.54 7.96 -2.39 -0.02 0.52 16 29 H -0.29 -2.12 7.11 99.48 0.71 -1.41 16 30 H -0.30 -2.32 7.11 99.48 0.71 -1.62 16 31 H 0.12 0.60 8.06 -2.91 -0.02 0.58 16 32 H 0.13 0.10 8.06 -2.91 -0.02 0.08 16 33 H 0.13 -1.13 8.09 -2.39 -0.02 -1.15 16 34 H 0.13 -1.08 8.08 -2.39 -0.02 -1.10 16 35 H 0.41 -2.61 7.77 -92.71 -0.72 -3.33 16 36 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.08 0.60 5.94 -2.39 -0.01 0.58 16 38 H 0.14 -1.31 7.01 -2.91 -0.02 -1.33 16 39 H 0.14 -1.04 8.06 -2.91 -0.02 -1.06 16 40 H 0.13 -0.56 8.06 -2.91 -0.02 -0.59 16 41 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 42 H 0.12 0.07 8.03 -2.91 -0.02 0.05 16 43 H 0.07 0.10 8.10 -2.38 -0.02 0.08 16 44 H 0.11 -0.41 8.09 -2.39 -0.02 -0.43 16 45 H 0.40 -2.98 9.12 -74.06 -0.68 -3.66 16 46 H 0.11 -0.95 7.43 -2.39 -0.02 -0.97 16 47 H 0.08 -0.58 7.95 -2.39 -0.02 -0.60 16 48 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 49 H 0.14 -0.23 4.91 -2.91 -0.01 -0.24 16 Total: 0.00 -25.01 401.39 -1.42 -26.43 By element: Atomic # 1 Polarization: -18.21 SS G_CDS: -1.01 Total: -19.22 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 3.63 Total: 5.88 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -2.41 Total: -1.99 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -3.68 Total: -14.03 kcal Atomic # 14 Polarization: 0.88 SS G_CDS: 2.04 Total: 2.93 kcal Total: -25.01 -1.42 -26.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_12335836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.483 kcal (2) G-P(sol) polarization free energy of solvation -25.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds