Wall clock time and date at job start Sat Mar 6 2021 23:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86302 * 109.47257 * 2 1 4 4 C 1.50705 * 109.47101 * 240.00553 * 2 1 3 5 5 C 1.37945 * 119.91705 * 299.99340 * 4 2 1 6 6 C 1.39604 * 119.87148 * 179.97438 * 5 4 2 7 7 C 1.47849 * 120.13778 * 179.97438 * 6 5 4 8 8 O 1.21552 * 120.00250 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99869 * 180.02562 * 7 6 5 10 10 C 1.46492 * 120.00082 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47166 * 183.29779 * 10 9 7 12 12 C 1.50701 * 112.85341 * 287.76229 * 11 10 9 13 13 C 1.38230 * 119.99957 * 124.23028 * 12 11 10 14 14 C 1.38237 * 120.00102 * 179.77104 * 13 12 11 15 15 C 1.38239 * 119.99661 * 0.50093 * 14 13 12 16 16 C 1.38235 * 119.99751 * 359.75184 * 15 14 13 17 17 C 1.38230 * 119.99739 * 304.50228 * 12 11 10 18 18 C 1.53782 * 113.61320 * 156.45310 * 11 10 9 19 19 C 1.53783 * 87.08215 * 270.88817 * 18 11 10 20 20 H 1.09003 * 113.68977 * 220.01035 * 19 18 11 21 21 O 1.42891 * 113.61512 * 89.11937 * 19 18 11 22 22 C 1.53777 * 87.07857 * 334.56646 * 19 18 11 23 23 C 1.39538 * 119.71768 * 0.26356 * 6 5 4 24 24 C 1.38075 * 119.84642 * 359.48504 * 23 6 5 25 25 Br 1.89093 * 119.94169 * 180.25884 * 24 23 6 26 26 C 1.38356 * 119.92297 * 119.97748 * 4 2 1 27 27 H 0.96690 * 114.00462 * 60.00121 * 1 2 3 28 28 H 1.09003 * 109.47666 * 120.00390 * 2 1 3 29 29 H 1.48497 * 109.99626 * 60.00049 * 3 2 1 30 30 H 1.48492 * 110.00312 * 181.32204 * 3 2 1 31 31 H 1.07997 * 120.06504 * 359.96324 * 5 4 2 32 32 H 0.97005 * 119.99682 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47357 * 63.30146 * 10 9 7 34 34 H 1.09000 * 109.47689 * 303.30411 * 10 9 7 35 35 H 1.08000 * 120.00370 * 359.97438 * 13 12 11 36 36 H 1.07995 * 120.00474 * 180.22793 * 14 13 12 37 37 H 1.08002 * 120.00130 * 179.73010 * 15 14 13 38 38 H 1.08001 * 119.99897 * 179.97438 * 16 15 14 39 39 H 1.08002 * 120.00551 * 0.02562 * 17 12 11 40 40 H 1.09000 * 113.61666 * 156.33667 * 18 11 10 41 41 H 1.09000 * 113.61316 * 25.43702 * 18 11 10 42 42 H 0.96702 * 114.00825 * 82.50182 * 21 19 18 43 43 H 1.09007 * 113.61291 * 139.98194 * 22 19 18 44 44 H 1.08999 * 113.61713 * 270.88288 * 22 19 18 45 45 H 1.08006 * 120.07907 * 179.74911 * 23 6 5 46 46 H 1.08000 * 119.85972 * 0.04132 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.5971 -2.0310 -1.4472 6 6 2.0625 -2.6879 -2.5877 7 6 1.7084 -4.1036 -2.8255 8 8 1.0103 -4.6978 -2.0274 9 7 2.1597 -4.7352 -3.9273 10 6 1.8093 -6.1380 -4.1626 11 6 2.5108 -6.6333 -5.4289 12 6 1.9166 -6.0600 -6.6896 13 6 2.7201 -5.3792 -7.5849 14 6 2.1759 -4.8574 -8.7436 15 6 0.8262 -5.0075 -9.0019 16 6 0.0218 -5.6839 -8.1039 17 6 0.5670 -6.2102 -6.9478 18 6 2.6983 -8.1591 -5.4725 19 6 4.0389 -7.9360 -4.7528 20 1 4.8437 -8.5738 -5.1184 21 8 3.9314 -7.9403 -3.3280 22 6 4.0436 -6.5258 -5.3661 23 6 2.8683 -2.0046 -3.4992 24 6 3.1914 -0.6813 -3.2735 25 35 4.2771 0.2495 -4.5106 26 6 2.7262 -0.0362 -2.1404 27 1 -0.3933 0.4416 -0.7650 28 1 1.7924 -0.5139 0.8899 29 1 1.5615 2.4678 1.2085 30 1 3.5345 1.7703 -0.0322 31 1 0.9768 -2.5559 -0.7358 32 1 2.7165 -4.2608 -4.5644 33 1 0.7301 -6.2271 -4.2867 34 1 2.1280 -6.7399 -3.3116 35 1 3.7737 -5.2577 -7.3808 36 1 2.8044 -4.3287 -9.4449 37 1 0.4002 -4.5961 -9.9050 38 1 -1.0328 -5.8008 -8.3055 39 1 -0.0618 -6.7379 -6.2459 40 1 2.8053 -8.5572 -6.4815 41 1 1.9682 -8.7059 -4.8758 42 1 3.9279 -8.8244 -2.9363 43 1 4.3995 -5.7540 -4.6835 44 1 4.5184 -6.4774 -6.3460 45 1 3.2350 -2.5083 -4.3815 46 1 2.9853 0.9977 -1.9658 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13154426_12335870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:23:01 Heat of formation + Delta-G solvation = -22.036241 kcal Electronic energy + Delta-G solvation = -31582.702559 eV Core-core repulsion = 27258.149809 eV Total energy + Delta-G solvation = -4324.552751 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.061 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.06378 -41.24668 -39.74499 -39.34299 -37.68585 -36.47023 -35.09078 -33.59802 -33.10095 -32.00183 -31.77629 -30.46121 -28.78853 -27.12614 -26.99392 -25.41235 -24.27202 -23.28714 -22.79337 -22.40133 -21.33501 -20.09650 -19.05721 -18.76670 -17.91816 -17.82761 -17.58024 -17.20685 -16.57122 -16.40264 -16.36185 -15.99867 -15.89715 -15.76801 -15.48679 -15.35338 -14.95308 -14.73963 -14.52245 -14.41593 -14.26261 -14.16347 -14.01160 -13.53142 -13.32959 -13.27448 -13.11857 -12.97629 -12.76860 -12.32756 -12.17713 -12.01414 -11.94508 -11.92009 -11.66453 -11.47072 -11.39388 -11.01137 -10.81934 -10.59376 -10.26350 -9.98207 -9.89813 -9.86744 -9.66823 -5.13240 -0.46714 -0.15498 0.36610 0.41027 0.43747 1.15982 1.53079 1.66759 1.88595 2.05375 2.56757 2.76666 2.95047 3.23566 3.24934 3.34046 3.42304 3.45481 3.59307 3.66942 3.77252 3.85685 3.90039 3.98794 4.02442 4.06179 4.17071 4.23878 4.25193 4.30376 4.47591 4.49208 4.55483 4.58173 4.61341 4.68395 4.75042 4.82867 4.92193 4.94301 4.96711 5.05628 5.07426 5.09733 5.14334 5.35240 5.44116 5.52669 5.58464 5.61298 6.02750 6.44352 6.47998 6.58150 7.18396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.067 4.067 3 Si 0.684 3.316 4 C -0.120 4.120 5 C -0.018 4.018 6 C -0.125 4.125 7 C 0.561 3.439 8 O -0.528 6.528 9 N -0.716 5.716 10 C 0.144 3.856 11 C -0.052 4.052 12 C -0.071 4.071 13 C -0.122 4.122 14 C -0.116 4.116 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.150 4.150 19 C 0.080 3.920 20 H 0.073 0.927 21 O -0.546 6.546 22 C -0.130 4.130 23 C -0.054 4.054 24 C -0.094 4.094 25 Br -0.034 7.034 26 C -0.066 4.066 27 H 0.381 0.619 28 H 0.121 0.879 29 H -0.248 1.248 30 H -0.253 1.253 31 H 0.149 0.851 32 H 0.398 0.602 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.383 0.617 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.137 0.863 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -0.132 -5.125 5.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.178 4.178 3 Si 0.585 3.415 4 C -0.121 4.121 5 C -0.037 4.037 6 C -0.129 4.129 7 C 0.347 3.653 8 O -0.405 6.405 9 N -0.368 5.368 10 C 0.022 3.978 11 C -0.052 4.052 12 C -0.071 4.071 13 C -0.140 4.140 14 C -0.134 4.134 15 C -0.140 4.140 16 C -0.133 4.133 17 C -0.129 4.129 18 C -0.188 4.188 19 C 0.021 3.979 20 H 0.090 0.910 21 O -0.352 6.352 22 C -0.167 4.167 23 C -0.075 4.075 24 C -0.173 4.173 25 Br 0.052 6.948 26 C -0.085 4.085 27 H 0.228 0.772 28 H 0.138 0.862 29 H -0.173 1.173 30 H -0.178 1.178 31 H 0.166 0.834 32 H 0.234 0.766 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.231 0.769 43 H 0.100 0.900 44 H 0.122 0.878 45 H 0.154 0.846 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.171 0.694 -4.131 4.718 hybrid contribution 0.132 -1.198 -0.117 1.211 sum 2.303 -0.504 -4.248 4.858 Atomic orbital electron populations 1.86543 1.16571 1.81642 1.49258 1.25082 0.85640 1.10132 0.96909 0.94821 0.81251 0.77665 0.87758 1.20373 0.99282 0.94918 0.97516 1.21293 0.94479 0.92871 0.95058 1.19991 1.01467 0.94378 0.97024 1.18030 0.80053 0.85832 0.81353 1.90819 1.37382 1.67053 1.45206 1.45751 1.53638 1.13226 1.24197 1.21269 0.98941 0.81196 0.96443 1.20914 0.95271 0.96752 0.92262 1.19578 0.93759 0.98447 0.95317 1.21107 0.99832 0.98601 0.94432 1.21178 0.95386 0.99644 0.97188 1.21217 0.94053 0.99137 0.99556 1.21190 1.00006 0.97823 0.94327 1.20986 0.94554 0.99929 0.97408 1.23674 0.98869 0.94013 1.02220 1.22633 0.96115 0.97748 0.81411 0.90954 1.86494 1.96317 1.34022 1.18414 1.23278 0.94680 0.97313 1.01452 1.21275 0.95214 0.92540 0.98431 1.21628 1.02948 0.95595 0.97133 1.96832 1.65846 1.75362 1.56764 1.21201 0.95480 0.99789 0.92062 0.77201 0.86190 1.17285 1.17787 0.83372 0.76630 0.91274 0.88463 0.85770 0.85948 0.86043 0.85981 0.86170 0.88534 0.90084 0.76866 0.89993 0.87830 0.84565 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.05 12.76 -35.23 -0.45 -0.50 16 2 C -0.07 0.03 2.82 36.01 0.10 0.13 16 3 Si 0.68 -0.94 29.78 -169.99 -5.06 -6.01 16 4 C -0.12 -0.01 5.38 -104.68 -0.56 -0.57 16 5 C -0.02 -0.03 9.15 -39.18 -0.36 -0.39 16 6 C -0.12 -0.20 5.87 -104.97 -0.62 -0.81 16 7 C 0.56 1.80 7.77 -12.33 -0.10 1.71 16 8 O -0.53 -3.62 16.35 5.32 0.09 -3.53 16 9 N -0.72 -0.55 5.03 -61.25 -0.31 -0.86 16 10 C 0.14 0.11 4.81 -4.05 -0.02 0.09 16 11 C -0.05 0.07 0.69 -154.85 -0.11 -0.04 16 12 C -0.07 0.04 4.92 -104.63 -0.51 -0.47 16 13 C -0.12 0.12 9.14 -39.58 -0.36 -0.24 16 14 C -0.12 0.07 10.05 -39.58 -0.40 -0.33 16 15 C -0.12 0.02 10.05 -39.58 -0.40 -0.38 16 16 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 17 C -0.11 -0.01 9.21 -39.59 -0.36 -0.38 16 18 C -0.15 0.30 7.04 -25.92 -0.18 0.12 16 19 C 0.08 -0.15 5.28 -25.92 -0.14 -0.29 16 20 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 21 O -0.55 0.35 11.56 -35.23 -0.41 -0.06 16 22 C -0.13 0.25 6.09 -25.92 -0.16 0.09 16 23 C -0.05 0.01 9.28 -39.16 -0.36 -0.36 16 24 C -0.09 0.01 6.22 -39.57 -0.25 -0.24 16 25 Br -0.03 0.01 33.69 -68.01 -2.29 -2.28 16 26 C -0.07 0.03 8.41 -39.47 -0.33 -0.30 16 27 H 0.38 -1.45 8.70 45.56 0.40 -1.05 16 28 H 0.12 -0.02 7.96 -51.93 -0.41 -0.43 16 29 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 30 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 31 H 0.15 0.39 7.65 -52.49 -0.40 -0.01 16 32 H 0.40 -0.44 5.99 -40.82 -0.24 -0.68 16 33 H 0.07 0.11 7.12 -51.93 -0.37 -0.26 16 34 H 0.10 0.22 6.04 -51.93 -0.31 -0.09 16 35 H 0.12 -0.33 5.97 -52.49 -0.31 -0.65 16 36 H 0.12 -0.26 8.06 -52.49 -0.42 -0.68 16 37 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 38 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 39 H 0.12 -0.05 7.45 -52.49 -0.39 -0.45 16 40 H 0.10 -0.22 8.10 -51.93 -0.42 -0.64 16 41 H 0.08 -0.16 8.10 -51.93 -0.42 -0.58 16 42 H 0.38 -1.61 9.12 45.56 0.42 -1.20 16 43 H 0.08 -0.09 7.43 -51.92 -0.39 -0.48 16 44 H 0.10 -0.33 6.25 -51.93 -0.32 -0.65 16 45 H 0.14 -0.27 6.41 -52.48 -0.34 -0.61 16 46 H 0.14 -0.28 4.86 -52.49 -0.26 -0.54 16 LS Contribution 395.07 15.07 5.95 5.95 Total: 0.00 -8.32 395.07 -12.66 -20.98 By element: Atomic # 1 Polarization: -5.97 SS G_CDS: -4.67 Total: -10.64 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -5.51 Total: -3.05 kcal Atomic # 7 Polarization: -0.55 SS G_CDS: -0.31 Total: -0.86 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -0.77 Total: -4.09 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: -5.06 Total: -6.01 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.29 Total: -2.28 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -8.32 -12.66 -20.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_12335870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.061 kcal (2) G-P(sol) polarization free energy of solvation -8.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds