Wall clock time and date at job start Sat Mar 6 2021 23:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35660 * 116.99830 * 2 1 4 4 C 1.40134 * 120.15385 * 179.97438 * 3 2 1 5 5 C 1.47540 * 120.18804 * 0.04391 * 4 3 2 6 6 O 1.21588 * 120.00207 * 359.97413 * 5 4 3 7 7 N 1.34774 * 119.99808 * 179.97438 * 5 4 3 8 8 C 1.46507 * 119.99748 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47003 * 175.21930 * 8 7 5 10 10 C 1.50703 * 112.85166 * 292.18230 * 9 8 7 11 11 C 1.38241 * 119.99992 * 113.51063 * 10 9 8 12 12 C 1.38231 * 119.99459 * 179.78763 * 11 10 9 13 13 C 1.38237 * 120.00539 * 0.44338 * 12 11 10 14 14 C 1.38237 * 119.99710 * 359.81244 * 13 12 11 15 15 C 1.38233 * 119.99896 * 293.78457 * 10 9 8 16 16 C 1.53775 * 113.61688 * 160.87120 * 9 8 7 17 17 C 1.53782 * 87.08574 * 270.88572 * 16 9 8 18 18 H 1.08997 * 113.69319 * 220.00707 * 17 16 9 19 19 O 1.42896 * 113.61243 * 89.11003 * 17 16 9 20 20 C 1.53780 * 87.07666 * 334.56777 * 17 16 9 21 21 C 1.39701 * 119.62142 * 180.02562 * 4 3 2 22 22 C 1.37790 * 119.90580 * 0.02562 * 21 4 3 23 23 C 1.50699 * 119.84944 * 179.97438 * 22 21 4 24 24 O 1.42904 * 109.47120 * 65.00123 * 23 22 21 25 25 Si 1.86296 * 109.47238 * 184.99604 * 23 22 21 26 26 C 1.38550 * 120.30007 * 0.25190 * 22 21 4 27 27 C 1.38053 * 120.39057 * 359.48950 * 26 22 21 28 28 H 1.09000 * 109.47017 * 60.00720 * 1 2 3 29 29 H 1.09002 * 109.46636 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47266 * 300.00375 * 1 2 3 31 31 H 0.96999 * 120.00407 * 359.97438 * 7 5 4 32 32 H 1.08996 * 109.47102 * 295.22022 * 8 7 5 33 33 H 1.08996 * 109.47271 * 55.22136 * 8 7 5 34 34 H 1.07998 * 120.00187 * 0.02562 * 11 10 9 35 35 H 1.07999 * 120.00022 * 180.27301 * 12 11 10 36 36 H 1.08000 * 120.00448 * 179.83209 * 13 12 11 37 37 H 1.07997 * 120.00200 * 180.02562 * 14 13 12 38 38 H 1.07998 * 119.99742 * 359.97438 * 15 10 9 39 39 H 1.09001 * 113.61211 * 25.43602 * 16 9 8 40 40 H 1.09002 * 113.61998 * 156.33762 * 16 9 8 41 41 H 0.96698 * 114.00065 * 82.50785 * 19 17 16 42 42 H 1.09008 * 113.61247 * 270.88142 * 20 17 16 43 43 H 1.09004 * 113.69166 * 139.99341 * 20 17 16 44 44 H 1.07999 * 120.05029 * 180.02562 * 21 4 3 45 45 H 1.09002 * 109.47401 * 304.99868 * 23 22 21 46 46 H 0.96696 * 114.00316 * 59.99382 * 24 23 22 47 47 H 1.48502 * 110.00281 * 179.97438 * 25 23 22 48 48 H 1.48502 * 110.00323 * 301.32259 * 25 23 22 49 49 H 1.08001 * 119.80460 * 179.72570 * 26 22 21 50 50 H 1.07993 * 119.96005 * 180.27830 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4440 1.2859 0.0005 5 6 4.2550 0.0534 0.0001 6 8 3.7096 -1.0333 -0.0002 7 7 5.6005 0.1320 0.0001 8 6 6.4057 -1.0919 0.0003 9 6 7.8869 -0.7278 -0.1200 10 6 8.2377 -0.1389 -1.4621 11 6 8.6376 1.1811 -1.5545 12 6 8.9636 1.7199 -2.7850 13 6 8.8810 0.9415 -3.9243 14 6 8.4760 -0.3771 -3.8326 15 6 8.1542 -0.9172 -2.6014 16 6 8.8359 -1.8515 0.3289 17 6 8.7488 -1.2532 1.7429 18 1 9.6989 -1.2519 2.2772 19 8 7.6743 -1.7816 2.5227 20 6 8.4189 0.0892 1.0693 21 6 4.0666 2.5365 0.0011 22 6 3.3036 3.6838 0.0016 23 6 3.9765 5.0322 0.0028 24 8 4.6991 5.2050 -1.2179 25 14 2.6882 6.3691 0.1562 26 6 1.9204 3.6034 0.0069 27 6 1.2923 2.3740 0.0010 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 6.0357 0.9989 0.0000 32 1 6.2396 -1.6360 0.9300 33 1 6.1158 -1.7177 -0.8437 34 1 8.6991 1.7903 -0.6648 35 1 9.2803 2.7500 -2.8567 36 1 9.1331 1.3632 -4.8861 37 1 8.4118 -0.9854 -4.7226 38 1 7.8379 -1.9473 -2.5297 39 1 8.4014 -2.8479 0.2488 40 1 9.8304 -1.7856 -0.1126 41 1 7.8757 -2.6259 2.9489 42 1 9.2994 0.6858 0.8302 43 1 7.6480 0.6608 1.5861 44 1 5.1445 2.6040 0.0011 45 1 4.6659 5.0936 0.8449 46 1 4.1475 5.1620 -2.0110 47 1 3.3391 7.7039 0.1592 48 1 1.7234 6.2764 -0.9689 49 1 1.3301 4.5078 0.0117 50 1 0.2137 2.3195 0.0006 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_12496546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:23:16 Heat of formation + Delta-G solvation = -58.949081 kcal Electronic energy + Delta-G solvation = -34601.310398 eV Core-core repulsion = 30140.755178 eV Total energy + Delta-G solvation = -4460.555220 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.04362 -41.51534 -39.90441 -39.27432 -39.22874 -37.23392 -36.39224 -35.04032 -32.77449 -31.92904 -31.84610 -31.71178 -28.90127 -28.28762 -26.95638 -26.16872 -25.31809 -24.40522 -23.23360 -22.59870 -22.26570 -21.45453 -20.12300 -19.36094 -18.62192 -18.42288 -18.17449 -17.68685 -17.31420 -16.90421 -16.64596 -16.47785 -16.19977 -16.05783 -15.89579 -15.85100 -15.78314 -15.49352 -15.23300 -14.72767 -14.55132 -14.51628 -14.36303 -14.17582 -14.08437 -13.70791 -13.53829 -13.37575 -13.18766 -13.11013 -13.04686 -12.71597 -12.43942 -12.23051 -12.21533 -12.05419 -11.89727 -11.66933 -11.60118 -11.25965 -11.04245 -10.70424 -10.54972 -10.28114 -10.00028 -9.83823 -9.62257 -9.31147 -4.89017 -0.27800 0.19811 0.41513 0.47690 1.33387 1.61743 1.76937 1.99019 2.07242 2.25910 2.66555 2.82171 3.16355 3.35893 3.40921 3.50164 3.56094 3.64280 3.70125 3.73296 3.77120 3.93232 4.02509 4.11604 4.13103 4.15278 4.25906 4.29295 4.35066 4.38347 4.43813 4.52325 4.60720 4.62134 4.67008 4.68179 4.72409 4.74199 4.83142 4.86662 4.91957 4.99216 5.07115 5.09987 5.13073 5.17990 5.20607 5.25627 5.37645 5.55206 5.57655 5.62220 5.66222 6.09043 6.28983 6.48950 6.50783 6.88584 7.19135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.172 3.828 4 C -0.197 4.197 5 C 0.554 3.446 6 O -0.567 6.567 7 N -0.709 5.709 8 C 0.151 3.849 9 C -0.047 4.047 10 C -0.070 4.070 11 C -0.122 4.122 12 C -0.123 4.123 13 C -0.134 4.134 14 C -0.129 4.129 15 C -0.127 4.127 16 C -0.146 4.146 17 C 0.081 3.919 18 H 0.089 0.911 19 O -0.567 6.567 20 C -0.126 4.126 21 C -0.017 4.017 22 C -0.163 4.163 23 C -0.074 4.074 24 O -0.546 6.546 25 Si 0.763 3.237 26 C -0.044 4.044 27 C -0.211 4.211 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.406 0.594 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.396 0.604 42 H 0.118 0.882 43 H 0.075 0.925 44 H 0.144 0.856 45 H 0.130 0.870 46 H 0.385 0.615 47 H -0.303 1.303 48 H -0.279 1.279 49 H 0.158 0.842 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 3.710 2.227 4.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.123 3.877 4 C -0.201 4.201 5 C 0.343 3.657 6 O -0.447 6.447 7 N -0.361 5.361 8 C 0.028 3.972 9 C -0.048 4.048 10 C -0.070 4.070 11 C -0.140 4.140 12 C -0.141 4.141 13 C -0.152 4.152 14 C -0.147 4.147 15 C -0.145 4.145 16 C -0.185 4.185 17 C 0.022 3.978 18 H 0.107 0.893 19 O -0.376 6.376 20 C -0.163 4.163 21 C -0.036 4.036 22 C -0.163 4.163 23 C -0.183 4.183 24 O -0.354 6.354 25 Si 0.669 3.331 26 C -0.061 4.061 27 C -0.229 4.229 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.243 0.757 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.246 0.754 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.162 0.838 45 H 0.148 0.852 46 H 0.234 0.766 47 H -0.232 1.232 48 H -0.205 1.205 49 H 0.175 0.825 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.237 3.977 2.075 4.492 hybrid contribution 0.484 -0.724 -1.344 1.601 sum 0.722 3.253 0.731 3.411 Atomic orbital electron populations 1.23456 0.76483 1.05483 1.02901 1.86344 1.23260 1.26420 1.86551 1.19402 0.91208 0.85631 0.91431 1.19423 0.91296 0.93929 1.15439 1.18317 0.82491 0.88780 0.76138 1.90795 1.72471 1.30340 1.51049 1.45666 1.05134 1.10396 1.74946 1.21101 0.87816 0.86342 1.01932 1.20824 0.93313 0.98850 0.91771 1.19655 0.99240 0.94218 0.93866 1.21279 0.99682 0.94520 0.98524 1.21426 0.99411 1.00636 0.92583 1.21426 0.99972 0.94323 0.99503 1.21362 0.99386 0.96104 0.97892 1.21109 1.00566 1.00172 0.92692 1.23668 0.99754 0.97777 0.97262 1.22690 0.90335 0.94531 0.90218 0.89312 1.86461 1.40401 1.43106 1.67598 1.23298 1.02590 0.96181 0.94205 1.21062 1.00441 0.89356 0.92732 1.20176 0.93803 0.95814 1.06529 1.25150 1.04661 0.98621 0.89909 1.86578 1.38396 1.94221 1.16166 0.94125 0.76743 0.74012 0.88263 1.21316 0.93801 0.97976 0.93035 1.21476 1.01771 0.90824 1.08877 0.90976 0.87473 0.90554 0.75706 0.90198 0.93329 0.84172 0.84522 0.85009 0.85365 0.86437 0.90534 0.87812 0.75352 0.86346 0.90652 0.83849 0.85205 0.76559 1.23154 1.20530 0.82478 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -3.34 8.57 -68.84 -0.59 -3.93 16 3 C 0.17 1.28 6.70 22.84 0.15 1.43 16 4 C -0.20 -1.60 5.89 -20.01 -0.12 -1.72 16 5 C 0.55 7.09 7.76 86.70 0.67 7.76 16 6 O -0.57 -12.04 15.16 16.93 0.26 -11.79 16 7 N -0.71 -4.57 5.12 -466.26 -2.39 -6.96 16 8 C 0.15 0.95 4.83 86.38 0.42 1.37 16 9 C -0.05 -0.01 0.63 -52.40 -0.03 -0.04 16 10 C -0.07 -0.11 4.75 -19.86 -0.09 -0.21 16 11 C -0.12 0.01 9.05 22.27 0.20 0.21 16 12 C -0.12 -0.09 10.05 22.27 0.22 0.14 16 13 C -0.13 -0.27 10.05 22.27 0.22 -0.05 16 14 C -0.13 -0.42 10.05 22.27 0.22 -0.19 16 15 C -0.13 -0.48 9.30 22.27 0.21 -0.27 16 16 C -0.15 0.31 6.94 31.12 0.22 0.53 16 17 C 0.08 -0.22 5.28 31.12 0.16 -0.06 16 18 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 19 O -0.57 -0.22 11.52 -148.98 -1.72 -1.94 16 20 C -0.13 0.32 5.89 31.12 0.18 0.51 16 21 C -0.02 -0.03 9.16 22.52 0.21 0.17 16 22 C -0.16 0.22 5.35 -19.90 -0.11 0.11 16 23 C -0.07 0.25 2.79 71.24 0.20 0.45 16 24 O -0.55 0.17 12.83 -148.98 -1.91 -1.74 16 25 Si 0.76 -3.47 29.86 68.60 2.05 -1.43 16 26 C -0.04 0.12 8.65 22.30 0.19 0.31 16 27 C -0.21 -0.02 9.03 22.34 0.20 0.19 16 28 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16 29 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.08 -0.30 7.66 -2.39 -0.02 -0.31 16 31 H 0.41 0.72 6.01 -92.71 -0.56 0.16 16 32 H 0.08 0.75 5.97 -2.39 -0.01 0.73 16 33 H 0.05 0.49 7.91 -2.39 -0.02 0.47 16 34 H 0.14 -0.59 6.44 -2.91 -0.02 -0.61 16 35 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 36 H 0.13 -0.14 8.06 -2.91 -0.02 -0.17 16 37 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 38 H 0.12 0.38 8.06 -2.91 -0.02 0.35 16 39 H 0.08 -0.10 8.10 -2.39 -0.02 -0.12 16 40 H 0.10 -0.36 8.10 -2.39 -0.02 -0.38 16 41 H 0.40 -2.76 9.12 -74.06 -0.68 -3.43 16 42 H 0.12 -0.70 6.83 -2.38 -0.02 -0.72 16 43 H 0.07 -0.07 7.61 -2.39 -0.02 -0.09 16 44 H 0.14 -0.19 6.40 -2.91 -0.02 -0.21 16 45 H 0.13 -0.73 7.96 -2.39 -0.02 -0.74 16 46 H 0.39 -1.95 8.70 -74.06 -0.64 -2.59 16 47 H -0.30 -1.10 7.11 99.48 0.71 -0.40 16 48 H -0.28 0.36 7.01 99.48 0.70 1.06 16 49 H 0.16 -1.23 4.81 -2.91 -0.01 -1.24 16 50 H 0.16 -0.87 6.30 -2.91 -0.02 -0.89 16 Total: 0.00 -25.74 403.24 -0.69 -26.43 By element: Atomic # 1 Polarization: -9.58 SS G_CDS: -0.84 Total: -10.41 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 4.45 Total: 11.76 kcal Atomic # 7 Polarization: -4.57 SS G_CDS: -2.39 Total: -6.96 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -3.96 Total: -19.39 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.05 Total: -1.43 kcal Total: -25.74 -0.69 -26.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_12496546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.520 kcal (2) G-P(sol) polarization free energy of solvation -25.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds