Wall clock time and date at job start Sat Mar 6 2021 23:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86298 * 109.47300 * 2 1 4 4 C 1.50698 * 109.47351 * 120.00636 * 2 1 3 5 5 C 1.34833 * 125.65740 * 65.29404 * 4 2 1 6 6 C 1.40799 * 107.05299 * 180.16090 * 5 4 2 7 7 C 1.36106 * 106.73147 * 359.56881 * 6 5 4 8 8 C 1.47559 * 125.94310 * 180.28602 * 7 6 5 9 9 C 1.39573 * 119.95743 * 180.02562 * 8 7 6 10 10 C 1.38314 * 119.81964 * 179.97438 * 9 8 7 11 11 O 1.35674 * 120.14075 * 179.97438 * 10 9 8 12 12 C 1.40373 * 119.72258 * 359.97438 * 10 9 8 13 13 C 1.47287 * 120.04536 * 179.97438 * 12 10 9 14 14 O 1.21623 * 120.00283 * 0.02562 * 13 12 10 15 15 N 1.34776 * 119.99957 * 180.02562 * 13 12 10 16 16 C 1.46497 * 120.00060 * 179.97438 * 15 13 12 17 17 C 1.53010 * 109.47165 * 175.21881 * 16 15 13 18 18 C 1.50700 * 112.84865 * 292.23224 * 17 16 15 19 19 C 1.38238 * 119.99460 * 113.51401 * 18 17 16 20 20 C 1.38233 * 119.99564 * 179.76471 * 19 18 17 21 21 C 1.38235 * 120.00002 * 0.51204 * 20 19 18 22 22 C 1.38241 * 120.00161 * 359.74021 * 21 20 19 23 23 C 1.38228 * 119.99716 * 0.02562 * 22 21 20 24 24 C 1.53778 * 113.61354 * 160.92868 * 17 16 15 25 25 C 1.53786 * 87.08271 * 270.88476 * 24 17 16 26 26 H 1.09001 * 113.61522 * 220.02358 * 25 24 17 27 27 O 1.42896 * 113.69049 * 89.12310 * 25 24 17 28 28 C 1.53774 * 113.61160 * 63.42977 * 17 16 15 29 29 C 1.39918 * 119.90696 * 0.02562 * 12 10 9 30 30 C 1.36390 * 120.18616 * 359.74014 * 29 12 10 31 31 O 1.34230 * 125.65036 * 244.97510 * 4 2 1 32 32 H 0.96695 * 114.00014 * 299.99628 * 1 2 3 33 33 H 1.09002 * 109.46987 * 240.00249 * 2 1 3 34 34 H 1.48498 * 110.00028 * 300.00332 * 3 2 1 35 35 H 1.48501 * 109.99555 * 61.32373 * 3 2 1 36 36 H 1.08000 * 126.47387 * 0.02758 * 5 4 2 37 37 H 1.08003 * 126.63226 * 179.83576 * 6 5 4 38 38 H 1.08004 * 120.08942 * 359.97438 * 9 8 7 39 39 H 0.96699 * 114.00655 * 89.99570 * 11 10 9 40 40 H 0.97000 * 120.00102 * 0.02562 * 15 13 12 41 41 H 1.09003 * 109.47578 * 295.21672 * 16 15 13 42 42 H 1.09003 * 109.47048 * 55.22229 * 16 15 13 43 43 H 1.08003 * 120.00308 * 0.02562 * 19 18 17 44 44 H 1.08004 * 120.00149 * 180.23100 * 20 19 18 45 45 H 1.08008 * 120.00082 * 179.72587 * 21 20 19 46 46 H 1.07993 * 119.99907 * 179.97438 * 22 21 20 47 47 H 1.07998 * 119.99903 * 179.97438 * 23 22 21 48 48 H 1.08997 * 113.61809 * 25.43059 * 24 17 16 49 49 H 1.08996 * 113.61638 * 156.33734 * 24 17 16 50 50 H 0.96707 * 113.99725 * 82.47121 * 27 25 24 51 51 H 1.09001 * 113.61294 * 203.66252 * 28 17 16 52 52 H 1.09000 * 113.61978 * 334.48480 * 28 17 16 53 53 H 1.08000 * 119.90796 * 180.02562 * 29 12 10 54 54 H 1.07997 * 119.86014 * 180.25671 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.7617 -2.0193 1.5065 6 6 2.3803 -2.2630 2.7476 7 6 2.9081 -1.0787 3.1616 8 6 3.6579 -0.8547 4.4126 9 6 4.1453 0.4178 4.7147 10 6 4.8473 0.6246 5.8884 11 8 5.3244 1.8588 6.1883 12 6 5.0640 -0.4477 6.7680 13 6 5.8111 -0.2356 8.0194 14 8 6.2403 0.8694 8.2917 15 7 6.0191 -1.2659 8.8630 16 6 6.7626 -1.0550 10.1075 17 6 6.7537 -2.3442 10.9317 18 6 5.3848 -2.6945 11.4554 19 6 4.7371 -3.8255 10.9946 20 6 3.4835 -4.1495 11.4786 21 6 2.8730 -3.3367 12.4154 22 6 3.5185 -2.2028 12.8723 23 6 4.7741 -1.8815 12.3919 24 6 7.8572 -2.3991 12.0013 25 6 8.7586 -3.0294 10.9266 26 1 9.3875 -3.8364 11.3025 27 8 9.4864 -2.0724 10.1542 28 6 7.4699 -3.5191 10.2451 29 6 4.5703 -1.7186 6.4536 30 6 3.8744 -1.9173 5.2975 31 8 2.6272 -0.1466 2.2301 32 1 -0.3933 0.4416 0.7650 33 1 1.7923 -0.5138 -0.8900 34 1 1.5615 2.4679 -1.2084 35 1 1.5880 2.4584 1.2243 36 1 1.2465 -2.7434 0.8928 37 1 2.4304 -3.2080 3.2682 38 1 3.9748 1.2387 4.0339 39 1 4.7081 2.4069 6.6931 40 1 5.6771 -2.1472 8.6458 41 1 7.7913 -0.7802 9.8742 42 1 6.2936 -0.2547 10.6799 43 1 5.2124 -4.4583 10.2597 44 1 2.9790 -5.0351 11.1214 45 1 1.8916 -3.5874 12.7903 46 1 3.0413 -1.5677 13.6039 47 1 5.2782 -0.9955 12.7485 48 1 8.1938 -1.4167 12.3322 49 1 7.6298 -3.0707 12.8292 50 1 10.2980 -1.7606 10.5776 51 1 7.1366 -4.4969 10.5928 52 1 7.4926 -3.4416 9.1581 53 1 4.7366 -2.5435 7.1305 54 1 3.4921 -2.8995 5.0621 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_12807986.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:23:34 Heat of formation + Delta-G solvation = -46.556334 kcal Electronic energy + Delta-G solvation = -40209.847149 eV Core-core repulsion = 35046.468705 eV Total energy + Delta-G solvation = -5163.378443 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.165 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.74578 -41.99656 -41.27470 -39.60471 -39.22481 -38.21170 -37.89357 -36.37107 -35.08932 -34.23375 -33.41421 -31.89393 -31.69920 -31.34741 -30.61279 -28.66674 -27.06733 -26.72152 -24.91197 -24.20295 -24.00842 -23.19212 -22.46646 -22.28223 -21.91847 -21.31427 -20.20041 -19.60476 -18.77138 -18.59416 -18.57461 -17.73645 -17.66079 -17.50106 -17.28518 -16.70261 -16.49077 -16.33888 -16.23862 -15.98407 -15.83036 -15.75716 -15.59157 -15.33630 -15.19199 -14.70441 -14.44798 -14.39985 -14.25508 -14.14507 -14.05839 -13.97216 -13.79750 -13.68940 -13.60136 -13.44873 -13.14368 -13.04328 -12.96011 -12.74368 -12.67270 -12.20539 -12.19458 -11.92291 -11.86985 -11.58413 -11.23010 -11.13980 -10.94563 -10.84910 -10.69599 -10.62806 -10.07763 -9.96684 -9.80543 -9.59421 -9.02120 -4.98652 -0.80517 0.12510 0.44468 0.51076 0.63798 1.12322 1.42958 1.44560 1.68906 1.87437 1.92634 2.03508 2.62904 2.85140 3.00167 3.18087 3.21082 3.34674 3.38495 3.51007 3.60022 3.64536 3.75509 3.78471 3.86469 3.96759 3.99377 4.02183 4.14912 4.16864 4.20998 4.29538 4.35559 4.42490 4.45899 4.53954 4.61745 4.65909 4.69143 4.71188 4.76423 4.78822 4.85078 4.87493 4.90859 5.00914 5.04921 5.08563 5.11026 5.16420 5.19219 5.20428 5.22810 5.35396 5.42938 5.51630 5.60856 5.66022 5.69276 5.95767 6.12418 6.31398 6.44890 6.67144 6.88757 7.14905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.032 4.032 3 Si 0.760 3.240 4 C -0.051 4.051 5 C -0.181 4.181 6 C -0.171 4.171 7 C 0.005 3.995 8 C 0.026 3.974 9 C -0.152 4.152 10 C 0.161 3.839 11 O -0.494 6.494 12 C -0.179 4.179 13 C 0.553 3.447 14 O -0.566 6.566 15 N -0.705 5.705 16 C 0.149 3.851 17 C -0.046 4.046 18 C -0.070 4.070 19 C -0.121 4.121 20 C -0.122 4.122 21 C -0.135 4.135 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.148 4.148 25 C 0.078 3.922 26 H 0.087 0.913 27 O -0.568 6.568 28 C -0.124 4.124 29 C -0.053 4.053 30 C -0.107 4.107 31 O -0.177 6.177 32 H 0.390 0.610 33 H 0.158 0.842 34 H -0.280 1.280 35 H -0.295 1.295 36 H 0.168 0.832 37 H 0.182 0.818 38 H 0.139 0.861 39 H 0.407 0.593 40 H 0.409 0.591 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.126 0.874 47 H 0.116 0.884 48 H 0.074 0.926 49 H 0.103 0.897 50 H 0.396 0.604 51 H 0.121 0.879 52 H 0.078 0.922 53 H 0.165 0.835 54 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -8.574 2.131 8.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.142 4.142 3 Si 0.664 3.336 4 C -0.101 4.101 5 C -0.200 4.200 6 C -0.190 4.190 7 C -0.044 4.044 8 C 0.026 3.974 9 C -0.170 4.170 10 C 0.114 3.886 11 O -0.307 6.307 12 C -0.183 4.183 13 C 0.342 3.658 14 O -0.446 6.446 15 N -0.357 5.357 16 C 0.026 3.974 17 C -0.046 4.046 18 C -0.070 4.070 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.186 4.186 25 C 0.019 3.981 26 H 0.105 0.895 27 O -0.376 6.376 28 C -0.161 4.161 29 C -0.072 4.072 30 C -0.125 4.125 31 O -0.075 6.075 32 H 0.239 0.761 33 H 0.175 0.825 34 H -0.207 1.207 35 H -0.222 1.222 36 H 0.185 0.815 37 H 0.200 0.800 38 H 0.157 0.843 39 H 0.267 0.733 40 H 0.247 0.753 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.144 0.856 47 H 0.134 0.866 48 H 0.093 0.907 49 H 0.122 0.878 50 H 0.246 0.754 51 H 0.139 0.861 52 H 0.096 0.904 53 H 0.183 0.817 54 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.002 -7.229 1.121 7.315 hybrid contribution -1.301 0.362 1.351 1.910 sum -1.303 -6.867 2.472 7.414 Atomic orbital electron populations 1.86637 1.17182 1.80370 1.50032 1.24443 0.83555 1.11888 0.94273 0.93615 0.90660 0.72255 0.77049 1.23164 1.00586 0.94216 0.92132 1.21843 1.04082 0.95700 0.98370 1.22248 1.00791 0.98883 0.97029 1.20538 1.04628 0.88020 0.91208 1.17935 0.95420 0.93792 0.90291 1.21574 0.99387 0.98203 0.97853 1.18479 0.92275 0.85683 0.92150 1.84727 1.45678 1.23566 1.76755 1.20537 1.05469 0.96228 0.96026 1.18239 0.79593 0.84329 0.83677 1.90809 1.52006 1.25453 1.76318 1.45638 1.56741 1.12145 1.21165 1.21127 0.96922 0.95707 0.83649 1.20805 0.91544 0.95124 0.97161 1.19644 0.95054 0.95523 0.96816 1.21315 0.95138 0.96832 1.00600 1.21451 0.95545 1.00029 0.96914 1.21439 1.00654 0.95178 0.98032 1.21350 0.95330 0.97817 1.00378 1.21091 0.95697 0.99734 0.97993 1.23675 0.95219 1.02749 0.96997 1.22721 0.92543 0.91169 0.91645 0.89506 1.86460 1.41477 1.61529 1.48164 1.23302 0.93527 0.98172 1.01116 1.21108 0.94059 0.95037 0.96952 1.21034 0.99193 0.99437 0.92840 1.83937 1.57964 1.38633 1.26940 0.76051 0.82513 1.20676 1.22189 0.81466 0.80030 0.84272 0.73288 0.75340 0.90330 0.93039 0.83663 0.84167 0.85145 0.85642 0.86623 0.90704 0.87843 0.75390 0.86133 0.90375 0.81743 0.81135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.42 12.88 -148.98 -1.92 -2.34 16 2 C -0.03 0.04 2.98 71.24 0.21 0.26 16 3 Si 0.76 -0.21 32.11 68.60 2.20 2.00 16 4 C -0.05 -0.05 6.21 24.90 0.15 0.10 16 5 C -0.18 0.05 10.78 22.11 0.24 0.29 16 6 C -0.17 0.24 10.26 22.40 0.23 0.47 16 7 C 0.01 0.01 7.02 24.23 0.17 0.18 16 8 C 0.03 0.04 5.87 -20.08 -0.12 -0.08 16 9 C -0.15 -0.69 9.65 22.61 0.22 -0.47 16 10 C 0.16 1.14 6.71 22.81 0.15 1.29 16 11 O -0.49 -4.78 11.56 -68.91 -0.80 -5.57 16 12 C -0.18 -0.88 5.89 -19.97 -0.12 -0.99 16 13 C 0.55 4.87 7.75 86.62 0.67 5.54 16 14 O -0.57 -9.77 15.14 16.89 0.26 -9.51 16 15 N -0.70 -1.64 5.12 -466.49 -2.39 -4.03 16 16 C 0.15 0.48 4.83 86.38 0.42 0.90 16 17 C -0.05 0.12 0.63 -52.40 -0.03 0.09 16 18 C -0.07 0.12 4.75 -19.87 -0.09 0.02 16 19 C -0.12 0.50 9.05 22.27 0.20 0.70 16 20 C -0.12 0.38 10.05 22.27 0.22 0.60 16 21 C -0.14 0.12 10.05 22.27 0.22 0.34 16 22 C -0.13 -0.10 10.05 22.27 0.22 0.13 16 23 C -0.13 -0.13 9.30 22.27 0.21 0.08 16 24 C -0.15 0.60 6.94 31.12 0.22 0.81 16 25 C 0.08 -0.35 5.27 31.12 0.16 -0.19 16 26 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 27 O -0.57 0.55 11.53 -148.98 -1.72 -1.17 16 28 C -0.12 0.68 5.89 31.12 0.18 0.86 16 29 C -0.05 0.14 9.47 22.25 0.21 0.36 16 30 C -0.11 0.39 9.48 22.26 0.21 0.60 16 31 O -0.18 -0.65 8.79 -6.05 -0.05 -0.70 16 32 H 0.39 -1.57 8.70 -74.06 -0.64 -2.22 16 33 H 0.16 -0.84 7.96 -2.39 -0.02 -0.86 16 34 H -0.28 -1.41 7.11 99.48 0.71 -0.70 16 35 H -0.30 -1.84 7.11 99.48 0.71 -1.13 16 36 H 0.17 -0.54 8.06 -2.91 -0.02 -0.56 16 37 H 0.18 -1.38 7.24 -2.91 -0.02 -1.40 16 38 H 0.14 0.59 7.90 -2.91 -0.02 0.57 16 39 H 0.41 1.09 9.06 -74.06 -0.67 0.42 16 40 H 0.41 -1.43 5.99 -92.71 -0.56 -1.99 16 41 H 0.08 0.55 5.97 -2.39 -0.01 0.53 16 42 H 0.05 0.35 7.91 -2.39 -0.02 0.33 16 43 H 0.15 -1.33 6.44 -2.91 -0.02 -1.35 16 44 H 0.14 -1.00 8.06 -2.91 -0.02 -1.03 16 45 H 0.13 -0.47 8.06 -2.91 -0.02 -0.49 16 46 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 47 H 0.12 0.10 8.06 -2.91 -0.02 0.08 16 48 H 0.07 -0.21 8.10 -2.39 -0.02 -0.23 16 49 H 0.10 -0.54 8.10 -2.39 -0.02 -0.56 16 50 H 0.40 -3.14 9.12 -74.05 -0.68 -3.81 16 51 H 0.12 -1.09 6.83 -2.39 -0.02 -1.11 16 52 H 0.08 -0.33 7.61 -2.39 -0.02 -0.35 16 53 H 0.17 -1.58 6.38 -2.91 -0.02 -1.60 16 54 H 0.17 -1.77 6.95 -2.91 -0.02 -1.79 16 Total: 0.00 -27.78 448.92 -1.74 -29.53 By element: Atomic # 1 Polarization: -18.59 SS G_CDS: -1.50 Total: -20.08 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 4.17 Total: 11.89 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -2.39 Total: -4.03 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -4.23 Total: -19.30 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: 2.20 Total: 2.00 kcal Total: -27.78 -1.74 -29.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_12807986.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.030 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds