Wall clock time and date at job start Sat Mar 6 2021 23:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47176 * 2 1 4 4 C 1.50705 * 109.46772 * 119.99795 * 2 1 3 5 5 C 1.34192 * 126.53794 * 255.04361 * 4 2 1 6 6 N 1.36868 * 109.96647 * 179.97438 * 5 4 2 7 7 C 1.37400 * 109.98146 * 359.97438 * 6 5 4 8 8 C 1.39321 * 133.25334 * 180.02562 * 7 6 5 9 9 C 1.36349 * 120.23851 * 179.74147 * 8 7 6 10 10 C 1.40173 * 120.67008 * 0.51683 * 9 8 7 11 11 C 1.47643 * 119.97573 * 179.75597 * 10 9 8 12 12 O 1.21578 * 120.00187 * 179.72466 * 11 10 9 13 13 N 1.34776 * 120.00285 * 359.72665 * 11 10 9 14 14 C 1.46507 * 120.00325 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47206 * 183.84459 * 14 13 11 16 16 C 1.50694 * 112.84889 * 68.68445 * 15 14 13 17 17 C 1.38237 * 119.99839 * 245.94762 * 16 15 14 18 18 C 1.38241 * 119.99804 * 179.79309 * 17 16 15 19 19 C 1.38240 * 119.99873 * 0.45790 * 18 17 16 20 20 C 1.38237 * 119.99859 * 359.77362 * 19 18 17 21 21 C 1.38228 * 120.00012 * 66.22278 * 16 15 14 22 22 C 1.53787 * 113.61281 * 297.49039 * 15 14 13 23 23 C 1.53785 * 87.07948 * 270.88627 * 22 15 14 24 24 H 1.09001 * 113.61380 * 219.93994 * 23 22 15 25 25 O 1.42899 * 113.61805 * 89.11719 * 23 22 15 26 26 C 1.53776 * 113.61064 * 199.99307 * 15 14 13 27 27 C 1.39192 * 120.04533 * 359.48029 * 10 9 8 28 28 C 1.39218 * 119.39675 * 0.25336 * 27 10 9 29 29 H 0.96701 * 113.99524 * 60.00178 * 1 2 3 30 30 H 1.08993 * 109.47395 * 239.99397 * 2 1 3 31 31 H 1.48499 * 110.00096 * 298.67572 * 3 2 1 32 32 H 1.48502 * 110.00198 * 59.99891 * 3 2 1 33 33 H 1.08003 * 125.01680 * 359.92369 * 5 4 2 34 34 H 0.96996 * 125.00889 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.88249 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.66975 * 180.25620 * 9 8 7 37 37 H 0.97005 * 119.99876 * 359.97438 * 13 11 10 38 38 H 1.09001 * 109.46597 * 63.84248 * 14 13 11 39 39 H 1.08994 * 109.46928 * 303.84520 * 14 13 11 40 40 H 1.07996 * 120.00149 * 359.97438 * 17 16 15 41 41 H 1.08001 * 119.99814 * 180.25169 * 18 17 16 42 42 H 1.07999 * 119.99480 * 179.79358 * 19 18 17 43 43 H 1.07996 * 119.99505 * 179.97438 * 20 19 18 44 44 H 1.08001 * 120.00217 * 359.97438 * 21 16 15 45 45 H 1.09000 * 113.61085 * 25.43132 * 22 15 14 46 46 H 1.08997 * 113.61424 * 156.25122 * 22 15 14 47 47 H 0.96692 * 114.00336 * 180.02562 * 25 23 22 48 48 H 1.09002 * 113.61022 * 203.66363 * 26 15 14 49 49 H 1.08992 * 113.61822 * 334.56595 * 26 15 14 50 50 H 1.08000 * 120.29576 * 180.22970 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 2.4599 -0.1385 2.3234 6 7 2.8016 -1.1003 3.2353 7 6 2.4942 -2.3453 2.7421 8 6 2.6323 -3.6347 3.2514 9 6 2.2238 -4.7097 2.5189 10 6 1.6707 -4.5368 1.2426 11 6 1.2384 -5.7121 0.4605 12 8 0.7539 -5.5623 -0.6445 13 7 1.3808 -6.9511 0.9714 14 6 0.9524 -8.1174 0.1951 15 6 1.1337 -9.3835 1.0347 16 6 0.1797 -9.4552 2.1990 17 6 0.6626 -9.3957 3.4929 18 6 -0.2130 -9.4571 4.5609 19 6 -1.5706 -9.5876 4.3351 20 6 -2.0530 -9.6520 3.0412 21 6 -1.1777 -9.5862 1.9732 22 6 2.5963 -9.6639 1.4186 23 6 2.7071 -10.4551 0.1046 24 1 3.2881 -11.3729 0.1952 25 8 3.1016 -9.6567 -1.0130 26 6 1.1878 -10.6737 0.1998 27 6 1.5233 -3.2574 0.7144 28 6 1.9346 -2.1577 1.4625 29 1 -0.3932 0.4417 -0.7651 30 1 1.7924 -0.5139 -0.8899 31 1 1.5880 2.4585 -1.2243 32 1 1.5615 2.4679 1.2085 33 1 2.5964 0.9238 2.4624 34 1 3.2011 -0.9282 4.1022 35 1 3.0602 -3.7830 4.2319 36 1 2.3314 -5.7049 2.9243 37 1 1.7676 -7.0707 1.8529 38 1 1.5547 -8.1923 -0.7102 39 1 -0.0978 -8.0080 -0.0752 40 1 1.7235 -9.2982 3.6694 41 1 0.1639 -9.4066 5.5718 42 1 -2.2543 -9.6390 5.1696 43 1 -3.1135 -9.7543 2.8648 44 1 -1.5546 -9.6367 0.9624 45 1 3.2199 -8.7703 1.4441 46 1 2.7030 -10.2801 2.3113 47 1 3.1726 -10.1487 -1.8423 48 1 0.9094 -11.5673 0.7585 49 1 0.6746 -10.5955 -0.7586 50 1 1.0942 -3.1192 -0.2670 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13154426_13287722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:05 Heat of formation + Delta-G solvation = 7.916815 kcal Electronic energy + Delta-G solvation = -34405.731813 eV Core-core repulsion = 29944.880117 eV Total energy + Delta-G solvation = -4460.851697 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.39084 -41.86518 -40.21843 -39.30905 -37.84763 -37.36981 -36.35054 -34.84147 -33.29426 -31.94400 -31.74107 -30.93828 -30.52222 -28.33283 -27.01774 -26.38219 -25.07492 -23.95557 -23.38154 -23.20567 -22.37094 -21.29357 -20.52951 -19.91568 -19.00331 -18.66725 -18.38473 -18.27033 -17.72459 -17.34746 -16.75707 -16.49212 -15.95991 -15.88469 -15.79198 -15.74446 -15.37981 -15.22723 -15.13788 -14.93371 -14.69502 -14.62369 -14.40925 -14.15275 -14.03452 -13.98946 -13.71955 -13.55537 -13.31265 -13.19939 -13.07141 -12.74698 -12.67896 -12.42336 -12.25170 -12.06301 -11.90234 -11.72430 -11.62552 -11.30568 -10.76608 -10.68229 -10.67100 -10.30469 -9.84461 -9.78789 -9.59969 -9.21429 -8.73477 -4.93992 0.05701 0.29205 0.43865 0.49906 1.32559 1.53579 1.61086 1.96788 2.06151 2.15063 2.31713 2.83321 3.02462 3.08316 3.32659 3.50218 3.55040 3.64537 3.67305 3.74955 3.78442 3.89192 4.00030 4.05364 4.09522 4.11870 4.20270 4.23268 4.33315 4.34725 4.47250 4.57448 4.57999 4.61108 4.65544 4.68565 4.71320 4.76195 4.85888 4.90231 5.01595 5.04152 5.10909 5.12049 5.15185 5.23860 5.36027 5.48308 5.56032 5.58684 5.63507 5.65029 5.68706 5.70037 6.07384 6.09183 6.44724 6.59576 6.64447 6.72214 7.48951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.043 4.043 3 Si 0.683 3.317 4 C -0.145 4.145 5 C 0.063 3.937 6 N -0.585 5.585 7 C 0.119 3.881 8 C -0.133 4.133 9 C -0.066 4.066 10 C -0.166 4.166 11 C 0.565 3.435 12 O -0.540 6.540 13 N -0.720 5.720 14 C 0.146 3.854 15 C -0.051 4.051 16 C -0.067 4.067 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.129 4.129 23 C 0.081 3.919 24 H 0.072 0.928 25 O -0.546 6.546 26 C -0.151 4.151 27 C 0.007 3.993 28 C -0.102 4.102 29 H 0.377 0.623 30 H 0.074 0.926 31 H -0.260 1.260 32 H -0.255 1.255 33 H 0.176 0.824 34 H 0.421 0.579 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.397 0.603 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.383 0.617 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 -1.533 3.457 6.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.153 4.153 3 Si 0.584 3.416 4 C -0.152 4.152 5 C -0.063 4.063 6 N -0.187 5.187 7 C 0.010 3.990 8 C -0.154 4.154 9 C -0.086 4.086 10 C -0.170 4.170 11 C 0.353 3.647 12 O -0.419 6.419 13 N -0.372 5.372 14 C 0.022 3.978 15 C -0.052 4.052 16 C -0.067 4.067 17 C -0.139 4.139 18 C -0.135 4.135 19 C -0.141 4.141 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.166 4.166 23 C 0.021 3.979 24 H 0.090 0.910 25 O -0.352 6.352 26 C -0.189 4.189 27 C -0.012 4.012 28 C -0.106 4.106 29 H 0.225 0.775 30 H 0.092 0.908 31 H -0.184 1.184 32 H -0.179 1.179 33 H 0.193 0.807 34 H 0.259 0.741 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.232 0.768 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.100 0.900 46 H 0.120 0.880 47 H 0.231 0.769 48 H 0.114 0.886 49 H 0.099 0.901 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.240 -0.386 3.762 5.681 hybrid contribution -0.930 -0.637 0.129 1.134 sum 3.310 -1.023 3.891 5.210 Atomic orbital electron populations 1.86639 1.18113 1.80020 1.49476 1.24084 0.84048 1.10006 0.97150 0.95262 0.91424 0.74329 0.80578 1.19516 1.07908 0.91215 0.96567 1.21664 1.01261 0.94329 0.89075 1.41692 1.54893 1.04126 1.18018 1.18403 1.00010 0.86493 0.94106 1.19639 1.05819 0.88827 1.01091 1.20564 0.96769 0.98242 0.93052 1.19553 1.08001 0.93306 0.96184 1.18107 0.78105 0.82776 0.85703 1.90781 1.44730 1.86079 1.20265 1.45723 1.64700 1.05632 1.21177 1.21211 1.00879 0.81483 0.94192 1.20931 0.94264 0.95726 0.94237 1.19585 0.93718 0.99788 0.93645 1.21051 0.99759 1.01154 0.91933 1.21161 0.93526 0.99828 0.98947 1.21199 0.95713 1.00167 0.97030 1.21183 0.99797 0.99645 0.92730 1.20976 0.92737 0.99968 0.99173 1.23247 0.95181 1.01556 0.96589 1.22626 0.93813 0.93751 0.87689 0.91016 1.86497 1.90576 1.38771 1.19344 1.23675 0.97764 0.96744 1.00747 1.20648 0.92548 0.89189 0.98847 1.18911 1.04472 0.92880 0.94361 0.77509 0.90787 1.18446 1.17939 0.80695 0.74108 0.85479 0.85632 0.76770 0.88809 0.91337 0.85945 0.86025 0.86121 0.86032 0.86184 0.89950 0.88028 0.76920 0.88611 0.90125 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.51 12.86 -35.23 -0.45 -1.97 16 2 C -0.04 -0.05 3.05 36.01 0.11 0.06 16 3 Si 0.68 -0.60 30.80 -169.99 -5.23 -5.83 16 4 C -0.15 -0.34 5.61 -102.68 -0.58 -0.92 16 5 C 0.06 0.00 10.43 -16.73 -0.17 -0.17 16 6 N -0.58 0.33 6.05 -10.61 -0.06 0.27 16 7 C 0.12 0.22 7.27 -83.96 -0.61 -0.39 16 8 C -0.13 -0.08 10.00 -39.86 -0.40 -0.48 16 9 C -0.07 -0.08 9.46 -39.54 -0.37 -0.45 16 10 C -0.17 -0.64 5.87 -104.98 -0.62 -1.25 16 11 C 0.56 2.89 7.76 -12.42 -0.10 2.79 16 12 O -0.54 -4.74 16.33 5.30 0.09 -4.65 16 13 N -0.72 -1.54 5.12 -61.31 -0.31 -1.86 16 14 C 0.15 0.28 4.84 -4.04 -0.02 0.26 16 15 C -0.05 0.03 0.64 -154.85 -0.10 -0.07 16 16 C -0.07 -0.02 4.77 -104.63 -0.50 -0.52 16 17 C -0.12 0.04 9.05 -39.58 -0.36 -0.32 16 18 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 19 C -0.12 -0.08 10.05 -39.58 -0.40 -0.47 16 20 C -0.12 -0.11 10.05 -39.58 -0.40 -0.51 16 21 C -0.11 -0.11 9.29 -39.59 -0.37 -0.48 16 22 C -0.13 0.18 5.89 -25.91 -0.15 0.03 16 23 C 0.08 -0.12 5.28 -25.91 -0.14 -0.25 16 24 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 25 O -0.55 0.13 11.53 -35.23 -0.41 -0.27 16 26 C -0.15 0.22 6.94 -25.92 -0.18 0.04 16 27 C 0.01 0.03 9.64 -38.86 -0.37 -0.34 16 28 C -0.10 -0.38 6.34 -105.16 -0.67 -1.05 16 29 H 0.38 -0.47 8.74 45.56 0.40 -0.07 16 30 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 31 H -0.26 -0.37 7.11 56.52 0.40 0.03 16 32 H -0.25 -0.35 7.04 56.52 0.40 0.04 16 33 H 0.18 -0.48 6.30 -52.48 -0.33 -0.81 16 34 H 0.42 -1.62 8.96 -40.82 -0.37 -1.98 16 35 H 0.13 -0.26 8.06 -52.48 -0.42 -0.69 16 36 H 0.13 -0.19 6.36 -52.49 -0.33 -0.52 16 37 H 0.40 0.00 5.96 -40.82 -0.24 -0.24 16 38 H 0.09 0.30 5.98 -51.93 -0.31 -0.01 16 39 H 0.07 0.22 7.90 -51.93 -0.41 -0.19 16 40 H 0.12 -0.27 6.41 -52.49 -0.34 -0.60 16 41 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 42 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 43 H 0.12 -0.04 8.06 -52.49 -0.42 -0.47 16 44 H 0.12 0.05 8.06 -52.49 -0.42 -0.38 16 45 H 0.08 -0.06 7.56 -51.93 -0.39 -0.45 16 46 H 0.10 -0.27 6.80 -51.93 -0.35 -0.62 16 47 H 0.38 -1.49 9.12 45.56 0.42 -1.08 16 48 H 0.10 -0.17 8.10 -51.93 -0.42 -0.59 16 49 H 0.08 -0.11 8.10 -51.93 -0.42 -0.53 16 50 H 0.14 0.75 7.64 -52.49 -0.40 0.35 16 LS Contribution 409.44 15.07 6.17 6.17 Total: 0.00 -11.33 409.44 -12.66 -23.98 By element: Atomic # 1 Polarization: -5.27 SS G_CDS: -5.66 Total: -10.93 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -6.78 Total: -4.91 kcal Atomic # 7 Polarization: -1.21 SS G_CDS: -0.38 Total: -1.59 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.77 Total: -6.89 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: -5.23 Total: -5.83 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -11.33 -12.66 -23.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13287722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.900 kcal (2) G-P(sol) polarization free energy of solvation -11.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds