Wall clock time and date at job start Sat Mar 6 2021 23:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.47176 * 2 1 4 4 C 1.50705 * 109.46772 * 119.99795 * 2 1 3 5 5 C 1.34192 * 126.53794 * 255.04361 * 4 2 1 6 6 N 1.36868 * 109.96647 * 179.97438 * 5 4 2 7 7 C 1.37400 * 109.98146 * 359.97438 * 6 5 4 8 8 C 1.39321 * 133.25334 * 180.02562 * 7 6 5 9 9 C 1.36349 * 120.23851 * 179.74147 * 8 7 6 10 10 C 1.40173 * 120.67008 * 0.51683 * 9 8 7 11 11 C 1.47643 * 119.97573 * 179.75597 * 10 9 8 12 12 O 1.21578 * 120.00187 * 179.72466 * 11 10 9 13 13 N 1.34776 * 120.00285 * 359.72665 * 11 10 9 14 14 C 1.46507 * 120.00325 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47206 * 183.84459 * 14 13 11 16 16 C 1.50694 * 112.84889 * 68.68445 * 15 14 13 17 17 C 1.38237 * 119.99839 * 245.94762 * 16 15 14 18 18 C 1.38241 * 119.99804 * 179.79309 * 17 16 15 19 19 C 1.38240 * 119.99873 * 0.45790 * 18 17 16 20 20 C 1.38237 * 119.99859 * 359.77362 * 19 18 17 21 21 C 1.38228 * 120.00012 * 66.22278 * 16 15 14 22 22 C 1.53787 * 113.61281 * 297.49039 * 15 14 13 23 23 C 1.53785 * 87.07948 * 270.88627 * 22 15 14 24 24 H 1.09001 * 113.61380 * 219.93994 * 23 22 15 25 25 O 1.42899 * 113.61805 * 89.11719 * 23 22 15 26 26 C 1.53776 * 113.61064 * 199.99307 * 15 14 13 27 27 C 1.39192 * 120.04533 * 359.48029 * 10 9 8 28 28 C 1.39218 * 119.39675 * 0.25336 * 27 10 9 29 29 H 0.96701 * 113.99524 * 60.00178 * 1 2 3 30 30 H 1.08993 * 109.47395 * 239.99397 * 2 1 3 31 31 H 1.48499 * 110.00096 * 298.67572 * 3 2 1 32 32 H 1.48502 * 110.00198 * 59.99891 * 3 2 1 33 33 H 1.08003 * 125.01680 * 359.92369 * 5 4 2 34 34 H 0.96996 * 125.00889 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.88249 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.66975 * 180.25620 * 9 8 7 37 37 H 0.97005 * 119.99876 * 359.97438 * 13 11 10 38 38 H 1.09001 * 109.46597 * 63.84248 * 14 13 11 39 39 H 1.08994 * 109.46928 * 303.84520 * 14 13 11 40 40 H 1.07996 * 120.00149 * 359.97438 * 17 16 15 41 41 H 1.08001 * 119.99814 * 180.25169 * 18 17 16 42 42 H 1.07999 * 119.99480 * 179.79358 * 19 18 17 43 43 H 1.07996 * 119.99505 * 179.97438 * 20 19 18 44 44 H 1.08001 * 120.00217 * 359.97438 * 21 16 15 45 45 H 1.09000 * 113.61085 * 25.43132 * 22 15 14 46 46 H 1.08997 * 113.61424 * 156.25122 * 22 15 14 47 47 H 0.96692 * 114.00336 * 180.02562 * 25 23 22 48 48 H 1.09002 * 113.61022 * 203.66363 * 26 15 14 49 49 H 1.08992 * 113.61822 * 334.56595 * 26 15 14 50 50 H 1.08000 * 120.29576 * 180.22970 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 2.4599 -0.1385 2.3234 6 7 2.8016 -1.1003 3.2353 7 6 2.4942 -2.3453 2.7421 8 6 2.6323 -3.6347 3.2514 9 6 2.2238 -4.7097 2.5189 10 6 1.6707 -4.5368 1.2426 11 6 1.2384 -5.7121 0.4605 12 8 0.7539 -5.5623 -0.6445 13 7 1.3808 -6.9511 0.9714 14 6 0.9524 -8.1174 0.1951 15 6 1.1337 -9.3835 1.0347 16 6 0.1797 -9.4552 2.1990 17 6 0.6626 -9.3957 3.4929 18 6 -0.2130 -9.4571 4.5609 19 6 -1.5706 -9.5876 4.3351 20 6 -2.0530 -9.6520 3.0412 21 6 -1.1777 -9.5862 1.9732 22 6 2.5963 -9.6639 1.4186 23 6 2.7071 -10.4551 0.1046 24 1 3.2881 -11.3729 0.1952 25 8 3.1016 -9.6567 -1.0130 26 6 1.1878 -10.6737 0.1998 27 6 1.5233 -3.2574 0.7144 28 6 1.9346 -2.1577 1.4625 29 1 -0.3932 0.4417 -0.7651 30 1 1.7924 -0.5139 -0.8899 31 1 1.5880 2.4585 -1.2243 32 1 1.5615 2.4679 1.2085 33 1 2.5964 0.9238 2.4624 34 1 3.2011 -0.9282 4.1022 35 1 3.0602 -3.7830 4.2319 36 1 2.3314 -5.7049 2.9243 37 1 1.7676 -7.0707 1.8529 38 1 1.5547 -8.1923 -0.7102 39 1 -0.0978 -8.0080 -0.0752 40 1 1.7235 -9.2982 3.6694 41 1 0.1639 -9.4066 5.5718 42 1 -2.2543 -9.6390 5.1696 43 1 -3.1135 -9.7543 2.8648 44 1 -1.5546 -9.6367 0.9624 45 1 3.2199 -8.7703 1.4441 46 1 2.7030 -10.2801 2.3113 47 1 3.1726 -10.1487 -1.8423 48 1 0.9094 -11.5673 0.7585 49 1 0.6746 -10.5955 -0.7586 50 1 1.0942 -3.1192 -0.2670 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_13287722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:04 Heat of formation + Delta-G solvation = 5.576205 kcal Electronic energy + Delta-G solvation = -34405.833310 eV Core-core repulsion = 29944.880117 eV Total energy + Delta-G solvation = -4460.953193 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.47490 -41.87827 -40.51215 -39.27074 -37.98806 -37.51992 -36.41738 -35.05511 -33.39639 -31.93262 -31.71863 -31.08870 -30.63355 -28.45213 -26.93401 -26.45509 -25.14420 -24.08747 -23.48468 -23.19283 -22.31825 -21.55422 -20.65249 -19.91336 -19.07631 -18.62654 -18.52333 -18.40513 -17.67185 -17.43987 -17.02826 -16.53788 -16.11043 -15.95553 -15.87938 -15.79226 -15.45098 -15.25233 -15.19500 -15.02681 -14.81854 -14.78275 -14.40388 -14.16334 -14.12441 -14.06160 -13.80434 -13.64393 -13.45689 -13.16277 -13.04842 -12.79398 -12.69937 -12.58741 -12.21102 -12.15922 -11.88448 -11.82799 -11.58955 -11.26488 -11.07688 -10.80889 -10.69792 -10.37936 -10.11516 -9.81743 -9.60375 -9.34028 -8.82714 -4.88210 -0.16793 0.18493 0.43419 0.49851 1.33482 1.47566 1.64246 1.83588 1.97045 2.06497 2.10663 2.83950 2.86682 3.18012 3.38198 3.51472 3.52676 3.61109 3.70497 3.74944 3.78055 3.80069 3.99963 4.02652 4.11202 4.13974 4.15730 4.25676 4.28222 4.40066 4.45211 4.51343 4.54027 4.59191 4.64502 4.70010 4.76174 4.77485 4.85143 4.88327 4.98538 5.01324 5.09428 5.15196 5.19524 5.21985 5.25597 5.32291 5.35964 5.48045 5.55556 5.59491 5.64424 5.68226 5.96402 6.11359 6.47787 6.57471 6.62879 6.89458 7.16034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.067 4.067 3 Si 0.788 3.212 4 C -0.182 4.182 5 C 0.081 3.919 6 N -0.570 5.570 7 C 0.112 3.888 8 C -0.122 4.122 9 C -0.068 4.068 10 C -0.178 4.178 11 C 0.558 3.442 12 O -0.590 6.590 13 N -0.703 5.703 14 C 0.148 3.852 15 C -0.046 4.046 16 C -0.071 4.071 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.124 4.124 23 C 0.080 3.920 24 H 0.089 0.911 25 O -0.568 6.568 26 C -0.148 4.148 27 C -0.020 4.020 28 C -0.128 4.128 29 H 0.389 0.611 30 H 0.068 0.932 31 H -0.293 1.293 32 H -0.276 1.276 33 H 0.207 0.793 34 H 0.440 0.560 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.410 0.590 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.121 0.879 47 H 0.396 0.604 48 H 0.104 0.896 49 H 0.074 0.926 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 -1.495 6.479 9.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.175 4.175 3 Si 0.690 3.310 4 C -0.189 4.189 5 C -0.047 4.047 6 N -0.174 5.174 7 C 0.002 3.998 8 C -0.142 4.142 9 C -0.088 4.088 10 C -0.183 4.183 11 C 0.348 3.652 12 O -0.472 6.472 13 N -0.355 5.355 14 C 0.025 3.975 15 C -0.047 4.047 16 C -0.071 4.071 17 C -0.139 4.139 18 C -0.140 4.140 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.161 4.161 23 C 0.021 3.979 24 H 0.107 0.893 25 O -0.376 6.376 26 C -0.186 4.186 27 C -0.040 4.040 28 C -0.133 4.133 29 H 0.239 0.761 30 H 0.087 0.913 31 H -0.220 1.220 32 H -0.202 1.202 33 H 0.224 0.776 34 H 0.281 0.719 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.247 0.753 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.134 0.866 45 H 0.096 0.904 46 H 0.139 0.861 47 H 0.246 0.754 48 H 0.122 0.878 49 H 0.093 0.907 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.370 -0.402 6.826 9.345 hybrid contribution -1.633 -0.654 -0.835 1.947 sum 4.738 -1.056 5.991 7.711 Atomic orbital electron populations 1.86589 1.19492 1.80841 1.50457 1.24598 0.83294 1.12631 0.96938 0.94090 0.89577 0.70014 0.77288 1.19825 1.09960 0.90991 0.98136 1.22095 0.99007 0.95587 0.87983 1.41709 1.53976 1.03092 1.18593 1.18611 0.99800 0.87865 0.93506 1.20038 1.04232 0.87800 1.02123 1.20828 0.96151 1.00058 0.91734 1.19577 1.09021 0.92207 0.97466 1.18476 0.77520 0.83956 0.85259 1.90743 1.47197 1.86831 1.22473 1.45604 1.63554 1.04825 1.21468 1.21137 0.99273 0.82624 0.94458 1.20804 0.95222 0.94703 0.93941 1.19666 0.93370 0.99840 0.94272 1.21321 1.00971 1.00268 0.91334 1.21461 0.93287 0.99169 1.00058 1.21444 0.96570 1.00221 0.97100 1.21359 1.00228 1.00194 0.93159 1.21103 0.93538 1.00836 0.99163 1.23306 0.93666 1.01709 0.97443 1.22711 0.93684 0.94185 0.87343 0.89318 1.86462 1.90613 1.40076 1.20479 1.23679 0.98106 0.96411 1.00400 1.20558 0.94418 0.90572 0.98444 1.19197 1.05121 0.93440 0.95528 0.76109 0.91346 1.21992 1.20235 0.77639 0.71890 0.81803 0.82765 0.75261 0.90195 0.93404 0.83634 0.84095 0.85046 0.85598 0.86649 0.90417 0.86053 0.75389 0.87777 0.90720 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.60 12.86 -148.98 -1.92 -6.51 16 2 C -0.07 -0.29 3.05 71.24 0.22 -0.07 16 3 Si 0.79 -1.52 30.80 68.60 2.11 0.59 16 4 C -0.18 -1.04 5.61 -18.61 -0.10 -1.15 16 5 C 0.08 -0.08 10.43 82.98 0.87 0.78 16 6 N -0.57 1.67 6.05 -187.48 -1.13 0.53 16 7 C 0.11 0.34 7.27 39.19 0.28 0.62 16 8 C -0.12 0.07 10.00 22.09 0.22 0.29 16 9 C -0.07 -0.12 9.46 22.30 0.21 0.09 16 10 C -0.18 -1.76 5.87 -20.09 -0.12 -1.87 16 11 C 0.56 7.36 7.76 86.73 0.67 8.04 16 12 O -0.59 -13.05 16.33 -3.96 -0.06 -13.12 16 13 N -0.70 -4.07 5.12 -466.15 -2.38 -6.46 16 14 C 0.15 0.88 4.84 86.38 0.42 1.30 16 15 C -0.05 0.03 0.64 -52.40 -0.03 -0.01 16 16 C -0.07 -0.04 4.77 -19.87 -0.09 -0.14 16 17 C -0.12 0.24 9.05 22.27 0.20 0.44 16 18 C -0.12 0.14 10.05 22.27 0.22 0.36 16 19 C -0.14 -0.15 10.05 22.27 0.22 0.08 16 20 C -0.13 -0.38 10.05 22.27 0.22 -0.15 16 21 C -0.13 -0.43 9.29 22.27 0.21 -0.22 16 22 C -0.12 0.48 5.89 31.12 0.18 0.67 16 23 C 0.08 -0.27 5.28 31.12 0.16 -0.10 16 24 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 25 O -0.57 -0.07 11.53 -148.98 -1.72 -1.79 16 26 C -0.15 0.38 6.94 31.12 0.22 0.60 16 27 C -0.02 -0.26 9.64 22.73 0.22 -0.04 16 28 C -0.13 -1.19 6.34 -20.21 -0.13 -1.32 16 29 H 0.39 0.03 8.74 -74.06 -0.65 -0.61 16 30 H 0.07 0.27 7.96 -2.39 -0.02 0.25 16 31 H -0.29 -0.98 7.11 99.48 0.71 -0.28 16 32 H -0.28 -0.44 7.04 99.48 0.70 0.26 16 33 H 0.21 -1.62 6.30 -2.91 -0.02 -1.64 16 34 H 0.44 -4.64 8.96 -92.71 -0.83 -5.47 16 35 H 0.16 -1.32 8.06 -2.91 -0.02 -1.35 16 36 H 0.15 -0.77 6.36 -2.91 -0.02 -0.78 16 37 H 0.41 -0.02 5.96 -92.70 -0.55 -0.57 16 38 H 0.08 0.73 5.98 -2.39 -0.01 0.71 16 39 H 0.05 0.48 7.90 -2.39 -0.02 0.46 16 40 H 0.15 -1.03 6.41 -2.91 -0.02 -1.05 16 41 H 0.14 -0.76 8.06 -2.91 -0.02 -0.79 16 42 H 0.13 -0.25 8.06 -2.91 -0.02 -0.28 16 43 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 44 H 0.12 0.37 8.06 -2.91 -0.02 0.35 16 45 H 0.08 -0.19 7.56 -2.39 -0.02 -0.21 16 46 H 0.12 -0.93 6.80 -2.39 -0.02 -0.95 16 47 H 0.40 -2.79 9.12 -74.06 -0.68 -3.47 16 48 H 0.10 -0.42 8.10 -2.39 -0.02 -0.44 16 49 H 0.07 -0.10 8.10 -2.39 -0.02 -0.12 16 50 H 0.11 1.85 7.64 -2.91 -0.02 1.82 16 Total: 0.00 -30.78 409.44 -2.47 -33.25 By element: Atomic # 1 Polarization: -13.06 SS G_CDS: -1.64 Total: -14.70 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 4.27 Total: 8.20 kcal Atomic # 7 Polarization: -2.40 SS G_CDS: -3.52 Total: -5.92 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -3.70 Total: -21.42 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: 2.11 Total: 0.59 kcal Total: -30.78 -2.47 -33.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13287722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.822 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds