Wall clock time and date at job start Sat Mar 6 2021 23:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34661 * 124.85011 * 2 1 4 4 C 1.36770 * 108.39435 * 180.02562 * 3 2 1 5 5 C 1.47264 * 126.93961 * 180.02562 * 4 3 2 6 6 O 1.21629 * 120.00236 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99956 * 0.02562 * 5 4 3 8 8 C 1.46501 * 119.99942 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47139 * 184.77895 * 8 7 5 10 10 C 1.50707 * 112.84729 * 294.75602 * 9 8 7 11 11 C 1.38229 * 119.99952 * 283.14934 * 10 9 8 12 12 C 1.38243 * 119.99744 * 179.97438 * 11 10 9 13 13 C 1.38229 * 119.99955 * 0.09090 * 12 11 10 14 14 C 1.38230 * 120.00185 * 359.84670 * 13 12 11 15 15 C 1.38234 * 120.00007 * 0.12934 * 14 13 12 16 16 C 1.53788 * 113.61629 * 163.56507 * 9 8 7 17 17 C 1.53779 * 87.07752 * 270.79434 * 16 9 8 18 18 H 1.09004 * 113.61600 * 220.01494 * 17 16 9 19 19 O 1.42902 * 113.61211 * 89.20067 * 17 16 9 20 20 C 1.53779 * 113.69716 * 66.02474 * 9 8 7 21 21 C 1.46677 * 106.11777 * 0.25864 * 4 3 2 22 22 C 1.34495 * 106.33184 * 359.57123 * 21 4 3 23 23 C 1.50696 * 125.56972 * 180.14568 * 22 21 4 24 24 O 1.42902 * 109.47002 * 150.33501 * 23 22 21 25 25 Si 1.86302 * 109.47561 * 30.33617 * 23 22 21 26 26 H 1.08998 * 109.47049 * 89.97208 * 1 2 3 27 27 H 1.08998 * 109.46896 * 209.97893 * 1 2 3 28 28 H 1.09003 * 109.46769 * 329.97604 * 1 2 3 29 29 H 1.08001 * 125.79972 * 0.02562 * 3 2 1 30 30 H 0.97004 * 120.00153 * 0.02562 * 7 5 4 31 31 H 1.08995 * 109.47652 * 64.77099 * 8 7 5 32 32 H 1.09005 * 109.46761 * 304.77237 * 8 7 5 33 33 H 1.08001 * 120.00490 * 359.70230 * 11 10 9 34 34 H 1.07995 * 119.99674 * 179.97438 * 12 11 10 35 35 H 1.08006 * 119.99702 * 179.97438 * 13 12 11 36 36 H 1.08001 * 120.00546 * 180.10643 * 14 13 12 37 37 H 1.08007 * 120.00378 * 179.97438 * 15 14 13 38 38 H 1.09004 * 113.61234 * 25.34472 * 16 9 8 39 39 H 1.08997 * 113.61152 * 156.16258 * 16 9 8 40 40 H 0.96700 * 113.99672 * 179.97438 * 19 17 16 41 41 H 1.08997 * 113.61838 * 203.67700 * 20 9 8 42 42 H 1.09001 * 113.61020 * 334.58436 * 20 9 8 43 43 H 1.08002 * 126.83685 * 179.73980 * 21 4 3 44 44 H 1.09007 * 109.46914 * 270.33376 * 23 22 21 45 45 H 0.96701 * 113.99924 * 299.99808 * 24 23 22 46 46 H 1.48495 * 109.99928 * 180.02562 * 25 23 22 47 47 H 1.48503 * 109.99757 * 301.31857 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7177 -0.0006 5 6 4.7284 1.5958 -0.0003 6 8 5.8447 1.1129 -0.0013 7 7 4.5733 2.9346 0.0012 8 6 5.7494 3.8082 0.0010 9 6 5.3018 5.2661 0.1230 10 6 4.5114 5.7374 -1.0705 11 6 5.1613 6.0539 -2.2487 12 6 4.4362 6.4857 -3.3436 13 6 3.0615 6.6028 -3.2596 14 6 2.4114 6.2852 -2.0817 15 6 3.1364 5.8529 -0.9870 16 6 6.4323 6.2256 0.5310 17 6 6.0480 5.9320 1.9908 18 1 6.0787 6.8103 2.6356 19 8 6.7345 4.8097 2.5488 20 6 4.6397 5.5986 1.4706 21 6 3.5375 -0.7491 -0.0073 22 6 2.2447 -1.1197 -0.0005 23 6 1.7398 -2.5395 -0.0007 24 8 0.4811 -2.5976 0.6734 25 14 2.9652 -3.6346 0.8769 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 1.8766 2.1241 0.0004 30 1 3.6831 3.3198 0.0024 31 1 6.3014 3.6742 -0.9293 32 1 6.3913 3.5534 0.8443 33 1 6.2360 5.9680 -2.3125 34 1 4.9440 6.7333 -4.2640 35 1 2.4950 6.9406 -4.1149 36 1 1.3371 6.3750 -2.0166 37 1 2.6286 5.6051 -0.0666 38 1 7.4263 5.8690 0.2610 39 1 6.2574 7.2589 0.2314 40 1 6.4973 4.6203 3.4669 41 1 3.9742 6.4608 1.4292 42 1 4.1867 4.7359 1.9591 43 1 4.3981 -1.4016 -0.0134 44 1 1.6177 -2.8816 -1.0284 45 1 0.5147 -2.3068 1.5951 46 1 2.4791 -5.0377 0.8830 47 1 4.2870 -3.5584 0.2043 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_13287730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:11 Heat of formation + Delta-G solvation = -3.500994 kcal Electronic energy + Delta-G solvation = -30330.180122 eV Core-core repulsion = 26253.511734 eV Total energy + Delta-G solvation = -4076.668389 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.49783 -41.78376 -39.98769 -39.24555 -37.80335 -36.35736 -34.98432 -33.73859 -31.88160 -31.76986 -31.49422 -28.85570 -27.31174 -26.90828 -26.17779 -24.71217 -23.42404 -23.12513 -22.31444 -21.13922 -20.58040 -19.91376 -18.90926 -18.54765 -17.70147 -17.36383 -17.07588 -16.82506 -16.70542 -16.36292 -15.94583 -15.79164 -15.58563 -15.49726 -15.40271 -15.19898 -14.86942 -14.62025 -14.45679 -14.23073 -14.07490 -13.95835 -13.59032 -13.46618 -13.25906 -13.12124 -13.02663 -12.99386 -12.69008 -12.19043 -12.14369 -12.09051 -11.87529 -11.67985 -11.13168 -11.06592 -10.69892 -10.65680 -10.11028 -9.80803 -9.60694 -9.57447 -9.23538 -5.00018 0.44122 0.50481 0.72164 1.01734 1.37136 1.62949 1.88931 2.04702 2.24730 2.53699 2.85410 3.17625 3.29052 3.44393 3.50428 3.58076 3.70137 3.79233 3.86994 3.92477 4.03696 4.14970 4.17184 4.29290 4.36216 4.39532 4.42466 4.46129 4.51585 4.57260 4.65676 4.72396 4.77119 4.79811 4.86048 4.90645 4.94555 4.99161 5.02699 5.12158 5.16785 5.21317 5.23725 5.43328 5.59956 5.60914 5.65290 5.69330 5.94671 6.12125 6.22958 6.59076 6.62385 6.90965 7.32399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.419 5.419 3 C 0.075 3.925 4 C -0.260 4.260 5 C 0.585 3.415 6 O -0.600 6.600 7 N -0.706 5.706 8 C 0.150 3.850 9 C -0.044 4.044 10 C -0.072 4.072 11 C -0.129 4.129 12 C -0.131 4.131 13 C -0.135 4.135 14 C -0.121 4.121 15 C -0.119 4.119 16 C -0.120 4.120 17 C 0.078 3.922 18 H 0.088 0.912 19 O -0.569 6.569 20 C -0.149 4.149 21 C -0.169 4.169 22 C -0.012 4.012 23 C -0.033 4.033 24 O -0.543 6.543 25 Si 0.787 3.213 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.206 0.794 30 H 0.408 0.592 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.396 0.604 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.398 0.602 46 H -0.282 1.282 47 H -0.302 1.302 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 5.473 4.610 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.092 5.092 3 C -0.062 4.062 4 C -0.270 4.270 5 C 0.375 3.625 6 O -0.482 6.482 7 N -0.357 5.357 8 C 0.027 3.973 9 C -0.045 4.045 10 C -0.072 4.072 11 C -0.147 4.147 12 C -0.149 4.149 13 C -0.153 4.153 14 C -0.139 4.139 15 C -0.137 4.137 16 C -0.158 4.158 17 C 0.019 3.981 18 H 0.105 0.895 19 O -0.377 6.377 20 C -0.186 4.186 21 C -0.193 4.193 22 C -0.122 4.122 23 C -0.144 4.144 24 O -0.351 6.351 25 Si 0.692 3.308 26 H 0.092 0.908 27 H 0.138 0.862 28 H 0.127 0.873 29 H 0.223 0.777 30 H 0.245 0.755 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.246 0.754 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.148 0.852 44 H 0.132 0.868 45 H 0.249 0.751 46 H -0.209 1.209 47 H -0.229 1.229 Dipole moment (debyes) X Y Z Total from point charges -8.357 4.199 3.398 9.951 hybrid contribution -0.022 0.399 -0.653 0.766 sum -8.379 4.598 2.745 9.944 Atomic orbital electron populations 1.22819 0.74079 1.07755 1.04821 1.43708 1.08170 1.04168 1.53176 1.22326 0.88820 0.93227 1.01873 1.20268 0.92322 0.93654 1.20709 1.17746 0.87898 0.82109 0.74760 1.90751 1.28018 1.76240 1.53171 1.45509 1.10278 1.04703 1.75240 1.21044 0.87682 0.87210 1.01401 1.20783 0.97326 0.93052 0.93303 1.19683 0.94191 0.99210 0.94127 1.21134 1.00186 1.00029 0.93328 1.21364 0.94950 0.99741 0.98836 1.21443 0.94624 1.00291 0.98973 1.21451 1.01016 0.98551 0.92885 1.21258 0.92820 1.00036 0.99593 1.23171 0.98051 0.99950 0.94655 1.22706 0.91787 0.89099 0.94502 0.89458 1.86463 1.67929 1.49811 1.33522 1.23741 0.97598 1.03304 0.93967 1.21714 0.95566 0.93715 1.08302 1.20744 0.89934 0.90070 1.11451 1.24670 0.93717 0.93921 1.02074 1.86426 1.28915 1.89126 1.30650 0.93240 0.73411 0.75361 0.88800 0.90821 0.86185 0.87281 0.77748 0.75535 0.94174 0.90233 0.86547 0.85587 0.85077 0.84009 0.83728 0.91482 0.87024 0.75403 0.86983 0.89913 0.85198 0.86796 0.75078 1.20924 1.22914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.42 10.71 127.77 1.37 0.95 16 2 N -0.42 1.11 3.09 -533.24 -1.65 -0.54 16 3 C 0.08 -0.13 10.83 83.91 0.91 0.78 16 4 C -0.26 -1.82 6.29 -19.04 -0.12 -1.94 16 5 C 0.58 6.88 7.81 86.62 0.68 7.56 16 6 O -0.60 -13.26 16.97 -4.12 -0.07 -13.33 16 7 N -0.71 -2.87 5.19 -466.52 -2.42 -5.29 16 8 C 0.15 0.87 4.89 86.38 0.42 1.29 16 9 C -0.04 0.05 0.62 -52.40 -0.03 0.01 16 10 C -0.07 0.04 4.52 -19.86 -0.09 -0.05 16 11 C -0.13 -0.28 9.39 22.27 0.21 -0.07 16 12 C -0.13 -0.20 10.05 22.27 0.22 0.02 16 13 C -0.14 0.06 10.05 22.27 0.22 0.28 16 14 C -0.12 0.36 10.05 22.27 0.22 0.58 16 15 C -0.12 0.45 8.53 22.27 0.19 0.64 16 16 C -0.12 0.13 6.72 31.12 0.21 0.33 16 17 C 0.08 -0.24 5.27 31.12 0.16 -0.08 16 18 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 19 O -0.57 -0.39 11.52 -148.98 -1.72 -2.11 16 20 C -0.15 0.83 5.94 31.12 0.18 1.01 16 21 C -0.17 -1.35 9.50 23.62 0.22 -1.13 16 22 C -0.01 -0.02 6.13 40.98 0.25 0.23 16 23 C -0.03 0.05 2.98 71.23 0.21 0.26 16 24 O -0.54 2.85 9.95 -148.98 -1.48 1.37 16 25 Si 0.79 -0.23 31.31 68.60 2.15 1.92 16 26 H 0.07 -0.63 8.14 -2.39 -0.02 -0.64 16 27 H 0.12 -1.23 4.93 -2.39 -0.01 -1.24 16 28 H 0.11 -1.56 8.13 -2.39 -0.02 -1.58 16 29 H 0.21 -2.09 7.45 -2.91 -0.02 -2.11 16 30 H 0.41 -1.01 6.71 -92.71 -0.62 -1.63 16 31 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.81 5.95 -2.38 -0.01 0.79 16 33 H 0.12 0.24 8.03 -2.91 -0.02 0.22 16 34 H 0.13 -0.06 8.06 -2.91 -0.02 -0.09 16 35 H 0.13 -0.43 8.06 -2.91 -0.02 -0.46 16 36 H 0.14 -1.05 8.06 -2.91 -0.02 -1.08 16 37 H 0.15 -1.32 7.01 -2.91 -0.02 -1.34 16 38 H 0.07 0.16 8.10 -2.38 -0.02 0.14 16 39 H 0.11 -0.37 8.09 -2.39 -0.02 -0.39 16 40 H 0.40 -2.70 9.12 -74.06 -0.68 -3.38 16 41 H 0.11 -0.95 7.43 -2.39 -0.02 -0.97 16 42 H 0.08 -0.48 7.95 -2.39 -0.02 -0.50 16 43 H 0.13 1.48 6.68 -2.91 -0.02 1.46 16 44 H 0.11 -0.04 7.96 -2.38 -0.02 -0.06 16 45 H 0.40 -5.13 8.38 -74.06 -0.62 -5.75 16 46 H -0.28 -1.34 7.11 99.48 0.71 -0.63 16 47 H -0.30 -2.45 6.77 99.48 0.67 -1.77 16 Total: 0.00 -27.85 382.72 -0.63 -28.48 By element: Atomic # 1 Polarization: -20.30 SS G_CDS: -0.89 Total: -21.19 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.45 Total: 10.69 kcal Atomic # 7 Polarization: -1.76 SS G_CDS: -4.07 Total: -5.83 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -3.27 Total: -14.07 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: 2.15 Total: 1.92 kcal Total: -27.85 -0.63 -28.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13287730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.977 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds