Wall clock time and date at job start Sat Mar 6 2021 23:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38979 * 119.95295 * 2 1 4 4 O 1.35709 * 119.91286 * 359.69666 * 3 2 1 5 5 C 1.39023 * 120.17051 * 179.97438 * 3 2 1 6 6 C 1.50701 * 119.95103 * 179.97438 * 5 3 2 7 7 O 1.42897 * 109.47653 * 285.00011 * 6 5 3 8 8 Si 1.86301 * 109.46991 * 164.99815 * 6 5 3 9 9 C 1.37676 * 120.09322 * 359.97438 * 5 3 2 10 10 C 1.39755 * 119.90741 * 359.97438 * 9 5 3 11 11 C 1.47602 * 120.08624 * 179.97438 * 10 9 5 12 12 O 1.21591 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00358 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00291 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47143 * 175.22374 * 14 13 11 16 16 C 1.50708 * 112.85062 * 292.17435 * 15 14 13 17 17 C 1.38231 * 120.00404 * 113.50934 * 16 15 14 18 18 C 1.38229 * 120.00040 * 179.81095 * 17 16 15 19 19 C 1.38241 * 120.00172 * 0.42181 * 18 17 16 20 20 C 1.38233 * 119.99493 * 359.81334 * 19 18 17 21 21 C 1.38230 * 120.00378 * 359.97438 * 20 19 18 22 22 C 1.53776 * 113.61678 * 160.86729 * 15 14 13 23 23 C 1.53784 * 87.08065 * 270.88242 * 22 15 14 24 24 H 1.08999 * 113.61176 * 220.01876 * 23 22 15 25 25 O 1.42900 * 113.61426 * 89.11524 * 23 22 15 26 26 C 1.53774 * 113.61649 * 63.36547 * 15 14 13 27 27 C 1.37717 * 119.95613 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47155 * 90.00375 * 1 2 3 29 29 H 1.08993 * 109.46955 * 210.00414 * 1 2 3 30 30 H 1.08997 * 109.47178 * 330.00322 * 1 2 3 31 31 H 0.96697 * 113.99918 * 90.00643 * 4 3 2 32 32 H 1.09001 * 109.47281 * 45.00124 * 6 5 3 33 33 H 0.96707 * 113.99475 * 300.00131 * 7 6 5 34 34 H 1.48498 * 110.00130 * 180.02562 * 8 6 5 35 35 H 1.48504 * 110.00236 * 301.31851 * 8 6 5 36 36 H 1.07992 * 120.04474 * 179.97438 * 9 5 3 37 37 H 0.96998 * 119.99860 * 0.02562 * 13 11 10 38 38 H 1.08999 * 109.47384 * 295.22241 * 14 13 11 39 39 H 1.09001 * 109.46651 * 55.22663 * 14 13 11 40 40 H 1.08004 * 119.99866 * 0.02562 * 17 16 15 41 41 H 1.08001 * 120.00074 * 180.21660 * 18 17 16 42 42 H 1.07998 * 119.99726 * 179.79301 * 19 18 17 43 43 H 1.08006 * 119.99835 * 179.97438 * 20 19 18 44 44 H 1.08002 * 119.99970 * 179.97438 * 21 20 19 45 45 H 1.08995 * 113.61402 * 25.42821 * 22 15 14 46 46 H 1.08997 * 113.62037 * 156.33328 * 22 15 14 47 47 H 0.96698 * 114.00035 * 82.50061 * 25 23 22 48 48 H 1.09001 * 113.62067 * 203.66629 * 26 15 14 49 49 H 1.09003 * 113.61629 * 334.56879 * 26 15 14 50 50 H 1.07996 * 120.04890 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2042 0.0000 4 8 1.5197 2.3778 -0.0062 5 6 3.5912 1.2094 0.0005 6 6 4.3386 2.5180 0.0000 7 8 4.2726 3.1038 -1.3018 8 14 6.1196 2.2161 0.4555 9 6 4.2860 0.0209 0.0016 10 6 3.5918 -1.1921 0.0027 11 6 4.3328 -2.4686 0.0033 12 8 5.5487 -2.4659 0.0033 13 7 3.6617 -3.6374 0.0038 14 6 4.3971 -4.9045 0.0038 15 6 3.4100 -6.0671 0.1245 16 6 2.7268 -6.1178 1.4669 17 6 1.3673 -5.8861 1.5598 18 6 0.7400 -5.9365 2.7906 19 6 1.4739 -6.2099 3.9297 20 6 2.8344 -6.4368 3.8374 21 6 3.4609 -6.3908 2.6061 22 6 3.9915 -7.4181 -0.3242 23 6 3.4946 -7.0733 -1.7381 24 1 3.0690 -7.9237 -2.2708 25 8 4.4470 -6.3480 -2.5185 26 6 2.4409 -6.1785 -1.0642 27 6 2.1947 -1.1932 0.0005 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.3183 2.7204 0.8753 32 1 3.8875 3.1945 0.7260 33 1 4.6567 2.5555 -1.9997 34 1 6.8675 3.4990 0.4591 35 1 6.2004 1.5780 1.7940 36 1 5.3659 0.0259 0.0016 37 1 2.6917 -3.6397 0.0034 38 1 4.9579 -4.9991 -0.9261 39 1 5.0867 -4.9242 0.8477 40 1 0.7944 -5.6691 0.6703 41 1 -0.3228 -5.7589 2.8627 42 1 0.9844 -6.2460 4.8917 43 1 3.4079 -6.6501 4.7274 44 1 4.5239 -6.5677 2.5341 45 1 5.0771 -7.4743 -0.2445 46 1 3.4887 -8.2784 0.1176 47 1 5.1123 -6.9054 -2.9447 48 1 1.5141 -6.6998 -0.8248 49 1 2.2747 -5.2338 -1.5821 50 1 1.6548 -2.1285 0.0005 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_13287732.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:15 Heat of formation + Delta-G solvation = -76.108371 kcal Electronic energy + Delta-G solvation = -34226.403312 eV Core-core repulsion = 29765.104009 eV Total energy + Delta-G solvation = -4461.299302 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.02200 -41.47283 -40.19584 -39.26198 -37.86671 -37.50850 -36.41389 -35.10567 -33.98679 -32.10732 -31.81547 -31.66068 -28.65242 -28.00762 -26.97331 -26.81037 -25.11489 -24.08109 -23.18924 -22.32946 -22.04910 -21.45923 -19.98233 -19.58534 -18.73641 -18.57513 -18.10156 -17.66187 -17.33119 -16.88133 -16.53416 -16.41613 -16.16590 -16.03369 -15.77780 -15.63873 -15.54744 -15.22453 -14.93520 -14.69729 -14.42292 -14.34335 -14.22192 -14.13200 -14.03581 -13.94488 -13.63099 -13.29417 -13.15103 -13.04734 -12.92076 -12.79247 -12.69089 -12.37171 -12.21725 -12.20472 -11.87497 -11.64160 -11.57643 -11.26234 -11.08385 -10.68938 -10.47645 -10.16213 -9.97924 -9.81757 -9.66090 -9.60114 -5.06050 -0.41222 0.05421 0.43588 0.50030 1.19926 1.52750 1.62910 1.83208 2.01877 2.56263 2.84338 3.08328 3.18935 3.35645 3.38065 3.49011 3.55800 3.60219 3.72650 3.75845 3.78714 3.98604 4.01970 4.13984 4.14848 4.16191 4.28578 4.31844 4.41889 4.47179 4.55099 4.59809 4.64359 4.69785 4.70686 4.77137 4.79836 4.86002 4.89545 5.00634 5.02636 5.06548 5.10725 5.15545 5.17501 5.20109 5.23473 5.29903 5.33602 5.57442 5.59919 5.64937 5.68288 6.11431 6.41591 6.68280 6.69983 6.90791 7.09575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 C 0.154 3.846 4 O -0.493 6.493 5 C -0.158 4.158 6 C -0.050 4.050 7 O -0.547 6.547 8 Si 0.740 3.260 9 C -0.056 4.056 10 C -0.150 4.150 11 C 0.557 3.443 12 O -0.575 6.575 13 N -0.704 5.704 14 C 0.147 3.853 15 C -0.047 4.047 16 C -0.071 4.071 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.148 4.148 23 C 0.080 3.920 24 H 0.087 0.913 25 O -0.566 6.566 26 C -0.125 4.125 27 C -0.057 4.057 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.409 0.591 32 H 0.114 0.886 33 H 0.392 0.608 34 H -0.285 1.285 35 H -0.292 1.292 36 H 0.141 0.859 37 H 0.409 0.591 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.396 0.604 48 H 0.119 0.881 49 H 0.078 0.922 50 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 -6.000 -0.369 8.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C 0.108 3.892 4 O -0.307 6.307 5 C -0.159 4.159 6 C -0.161 4.161 7 O -0.354 6.354 8 Si 0.646 3.354 9 C -0.074 4.074 10 C -0.153 4.153 11 C 0.345 3.655 12 O -0.456 6.456 13 N -0.355 5.355 14 C 0.024 3.976 15 C -0.047 4.047 16 C -0.071 4.071 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.186 4.186 23 C 0.021 3.979 24 H 0.104 0.896 25 O -0.375 6.375 26 C -0.162 4.162 27 C -0.075 4.075 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.269 0.731 32 H 0.131 0.869 33 H 0.242 0.758 34 H -0.212 1.212 35 H -0.218 1.218 36 H 0.158 0.842 37 H 0.246 0.754 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.095 0.905 46 H 0.120 0.880 47 H 0.247 0.753 48 H 0.137 0.863 49 H 0.096 0.904 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.036 -4.938 0.127 7.054 hybrid contribution -0.180 -0.235 0.927 0.974 sum -5.216 -5.173 1.055 7.421 Atomic orbital electron populations 1.20745 0.88167 1.04177 1.03439 1.20431 0.98379 0.91634 1.01551 1.18461 0.88774 0.85872 0.96047 1.84774 1.75457 1.35568 1.34893 1.20641 0.94273 0.95687 1.05267 1.24808 1.08991 0.92892 0.89457 1.86506 1.84832 1.47585 1.16516 0.93773 0.76431 0.80809 0.84347 1.20984 1.00003 0.90587 0.95864 1.19826 0.94326 0.92728 1.08400 1.18348 0.86853 0.84415 0.75890 1.90778 1.14956 1.88100 1.51771 1.45656 1.10839 1.04977 1.74050 1.21181 0.93358 0.80651 1.02393 1.20817 0.96492 0.95657 0.91727 1.19667 0.94051 0.99577 0.93784 1.21307 0.93823 1.00276 0.98556 1.21445 1.00878 0.99211 0.92501 1.21434 0.94329 0.99973 0.99602 1.21360 0.95495 1.00138 0.97917 1.21109 1.00042 1.00664 0.92667 1.23670 1.01967 0.95659 0.97278 1.22696 0.90368 0.94668 0.90208 0.89565 1.86449 1.44772 1.38706 1.67565 1.23301 0.97297 1.01499 0.94109 1.21305 0.91777 0.98871 0.95579 0.90464 0.89494 0.90694 0.73090 0.86858 0.75849 1.21164 1.21841 0.84159 0.75359 0.89790 0.92843 0.83787 0.84273 0.85168 0.85607 0.86441 0.90518 0.87977 0.75342 0.86327 0.90375 0.82654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.57 9.78 71.24 0.70 1.27 16 2 C -0.12 0.10 5.89 -19.81 -0.12 -0.01 16 3 C 0.15 0.28 6.66 22.64 0.15 0.43 16 4 O -0.49 -0.30 11.85 -90.29 -1.07 -1.37 16 5 C -0.16 -0.47 5.27 -19.81 -0.10 -0.58 16 6 C -0.05 -0.13 2.37 71.24 0.17 0.04 16 7 O -0.55 -2.15 12.88 -148.98 -1.92 -4.07 16 8 Si 0.74 2.34 29.91 68.60 2.05 4.39 16 9 C -0.06 -0.25 8.20 22.50 0.18 -0.07 16 10 C -0.15 -0.59 5.87 -20.08 -0.12 -0.71 16 11 C 0.56 4.08 7.76 86.72 0.67 4.76 16 12 O -0.58 -8.63 16.34 -4.00 -0.07 -8.69 16 13 N -0.70 -1.11 5.12 -466.20 -2.39 -3.50 16 14 C 0.15 0.32 4.83 86.38 0.42 0.73 16 15 C -0.05 0.15 0.63 -52.40 -0.03 0.11 16 16 C -0.07 0.12 4.75 -19.86 -0.09 0.03 16 17 C -0.12 0.47 9.05 22.27 0.20 0.67 16 18 C -0.12 0.34 10.05 22.27 0.22 0.56 16 19 C -0.14 0.09 10.05 22.27 0.22 0.31 16 20 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 21 C -0.13 -0.11 9.30 22.27 0.21 0.09 16 22 C -0.15 0.70 6.94 31.12 0.22 0.92 16 23 C 0.08 -0.42 5.28 31.12 0.16 -0.26 16 24 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 25 O -0.57 1.30 11.52 -148.98 -1.72 -0.42 16 26 C -0.12 0.73 5.89 31.12 0.18 0.91 16 27 C -0.06 0.07 9.18 22.50 0.21 0.28 16 28 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.09 -0.75 8.08 -2.39 -0.02 -0.77 16 30 H 0.07 -0.42 7.53 -2.39 -0.02 -0.44 16 31 H 0.41 -3.24 9.06 -74.06 -0.67 -3.91 16 32 H 0.11 0.21 7.83 -2.39 -0.02 0.19 16 33 H 0.39 -1.26 8.70 -74.05 -0.64 -1.90 16 34 H -0.28 -2.52 7.11 99.48 0.71 -1.81 16 35 H -0.29 -2.67 7.11 99.48 0.71 -1.96 16 36 H 0.14 0.63 4.70 -2.91 -0.01 0.62 16 37 H 0.41 -1.46 6.00 -92.71 -0.56 -2.02 16 38 H 0.08 0.42 5.97 -2.39 -0.01 0.41 16 39 H 0.05 0.31 7.91 -2.39 -0.02 0.29 16 40 H 0.14 -1.25 6.44 -2.91 -0.02 -1.27 16 41 H 0.14 -0.93 8.06 -2.91 -0.02 -0.95 16 42 H 0.13 -0.44 8.06 -2.91 -0.02 -0.46 16 43 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 44 H 0.12 0.06 8.06 -2.91 -0.02 0.03 16 45 H 0.08 -0.29 8.10 -2.39 -0.02 -0.31 16 46 H 0.10 -0.58 8.10 -2.39 -0.02 -0.60 16 47 H 0.40 -3.66 9.12 -74.06 -0.68 -4.34 16 48 H 0.12 -1.08 6.83 -2.39 -0.02 -1.09 16 49 H 0.08 -0.36 7.61 -2.39 -0.02 -0.38 16 50 H 0.16 -1.13 6.39 -2.91 -0.02 -1.14 16 Total: 0.00 -24.23 406.52 -2.91 -27.14 By element: Atomic # 1 Polarization: -21.62 SS G_CDS: -1.48 Total: -23.10 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 3.68 Total: 9.61 kcal Atomic # 7 Polarization: -1.11 SS G_CDS: -2.39 Total: -3.50 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -4.77 Total: -14.55 kcal Atomic # 14 Polarization: 2.34 SS G_CDS: 2.05 Total: 4.39 kcal Total: -24.23 -2.91 -27.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13287732.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.964 kcal (2) G-P(sol) polarization free energy of solvation -24.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds