Wall clock time and date at job start Sat Mar 6 2021 23:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.46827 * 2 1 4 4 C 1.50697 * 109.47116 * 119.99772 * 2 1 3 5 5 C 1.38359 * 120.34579 * 65.02853 * 4 2 1 6 6 C 1.40025 * 118.28802 * 179.72690 * 5 4 2 7 7 C 1.47839 * 120.56046 * 180.24530 * 6 5 4 8 8 O 1.21555 * 120.00235 * 0.22497 * 7 6 5 9 9 N 1.34777 * 120.00489 * 180.22883 * 7 6 5 10 10 C 1.46496 * 120.00467 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47274 * 175.22024 * 10 9 7 12 12 C 1.50693 * 112.85046 * 292.17967 * 11 10 9 13 13 C 1.38238 * 120.00314 * 113.51418 * 12 11 10 14 14 C 1.38232 * 120.00290 * 179.77000 * 13 12 11 15 15 C 1.38237 * 120.00032 * 0.50133 * 14 13 12 16 16 C 1.38239 * 119.99655 * 359.74802 * 15 14 13 17 17 C 1.38233 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.53781 * 113.61520 * 160.86840 * 11 10 9 19 19 C 1.53776 * 87.08506 * 270.88355 * 18 11 10 20 20 H 1.09002 * 113.61749 * 220.01667 * 19 18 11 21 21 O 1.42899 * 113.61310 * 89.11394 * 19 18 11 22 22 C 1.53781 * 87.08118 * 334.57006 * 19 18 11 23 23 C 1.39517 * 118.88375 * 0.46614 * 6 5 4 24 24 N 1.31699 * 120.56413 * 359.52163 * 23 6 5 25 25 C 1.31927 * 121.87746 * 0.25775 * 24 23 6 26 26 H 0.96699 * 114.00488 * 299.99361 * 1 2 3 27 27 H 1.08998 * 109.47185 * 240.00665 * 2 1 3 28 28 H 1.48493 * 110.00262 * 300.00097 * 3 2 1 29 29 H 1.48500 * 109.99926 * 61.32104 * 3 2 1 30 30 H 1.08001 * 120.85720 * 359.97438 * 5 4 2 31 31 H 0.97008 * 119.99425 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.47007 * 295.22117 * 10 9 7 33 33 H 1.08998 * 109.47379 * 55.21461 * 10 9 7 34 34 H 1.08004 * 119.99896 * 359.97438 * 13 12 11 35 35 H 1.07995 * 120.00294 * 180.22953 * 14 13 12 36 36 H 1.08001 * 120.00533 * 179.72636 * 15 14 13 37 37 H 1.08004 * 119.99932 * 179.97438 * 16 15 14 38 38 H 1.08001 * 120.00449 * 179.97438 * 17 16 15 39 39 H 1.09002 * 113.61314 * 25.43864 * 18 11 10 40 40 H 1.09003 * 113.61183 * 156.33532 * 18 11 10 41 41 H 0.96702 * 114.00044 * 82.50686 * 21 19 18 42 42 H 1.09007 * 113.60875 * 270.88355 * 22 19 18 43 43 H 1.08993 * 113.69260 * 139.99532 * 22 19 18 44 44 H 1.07993 * 119.72099 * 179.79727 * 23 6 5 45 45 H 1.08007 * 119.46005 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6891 -2.0613 1.4056 6 6 2.1805 -2.6791 2.5620 7 6 1.9554 -4.1212 2.7974 8 8 1.3427 -4.7818 1.9815 9 7 2.4295 -4.7035 3.9166 10 6 2.2069 -6.1326 4.1495 11 6 2.9423 -6.5628 5.4203 12 6 4.4413 -6.5134 5.2741 13 6 5.1779 -5.6033 6.0091 14 6 6.5534 -5.5612 5.8785 15 6 7.1915 -6.4222 5.0053 16 6 6.4544 -7.3288 4.2665 17 6 5.0793 -7.3741 4.4006 18 6 2.4227 -7.8818 6.0162 19 6 1.4218 -7.0339 6.8186 20 1 1.2786 -7.3797 7.8423 21 8 0.1899 -6.8009 6.1328 22 6 2.4246 -5.8747 6.6945 23 6 2.8822 -1.9100 3.4907 24 7 3.0872 -0.6264 3.2789 25 6 2.6400 -0.0187 2.1966 26 1 -0.3934 0.4416 0.7651 27 1 1.7923 -0.5137 -0.8900 28 1 1.5614 2.4679 -1.2084 29 1 1.5878 2.4585 1.2243 30 1 1.1386 -2.6256 0.6674 31 1 2.9188 -4.1763 4.5676 32 1 1.1394 -6.3197 4.2664 33 1 2.5847 -6.7023 3.3006 34 1 4.6790 -4.9274 6.6878 35 1 7.1292 -4.8528 6.4554 36 1 8.2657 -6.3864 4.8999 37 1 6.9529 -8.0012 3.5839 38 1 4.5034 -8.0821 3.8231 39 1 1.9513 -8.5364 5.2830 40 1 3.1542 -8.3983 6.6377 41 1 -0.4450 -7.5264 6.2072 42 1 3.1567 -5.8425 7.5015 43 1 1.9561 -4.9082 6.5092 44 1 3.2644 -2.3720 4.3889 45 1 2.8309 1.0358 2.0623 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13154426_13287814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:25 Heat of formation + Delta-G solvation = -14.784707 kcal Electronic energy + Delta-G solvation = -29524.157299 eV Core-core repulsion = 25474.311090 eV Total energy + Delta-G solvation = -4049.846209 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.11508 -41.61025 -39.95122 -39.36403 -38.05610 -36.48164 -35.10770 -33.73809 -33.11259 -31.96958 -31.79304 -28.82336 -27.30026 -27.13137 -25.65479 -24.41984 -23.80140 -23.27628 -22.44583 -21.49391 -20.14539 -19.15635 -18.74557 -18.17226 -17.95796 -17.76685 -17.70079 -16.64713 -16.56795 -16.44039 -16.07857 -15.96395 -15.83526 -15.64074 -15.33810 -14.78651 -14.69874 -14.51434 -14.40826 -14.24958 -14.14028 -14.03622 -13.62072 -13.44126 -13.27455 -13.14338 -12.82884 -12.79296 -12.32698 -12.06565 -11.98002 -11.71446 -11.41176 -11.25387 -11.01110 -10.84121 -10.70330 -10.50002 -10.35998 -9.99078 -9.87508 -9.66913 -5.06462 -0.52918 0.01228 0.37197 0.43915 1.13389 1.48221 1.80805 1.86596 2.02999 2.68284 2.76558 2.95265 3.04943 3.23091 3.25350 3.38219 3.43128 3.56623 3.63038 3.66591 3.72725 3.77493 3.89514 4.03226 4.06385 4.13287 4.17379 4.22024 4.28931 4.48401 4.50161 4.54815 4.59544 4.60990 4.67310 4.81567 4.86077 4.90451 4.94320 4.97459 5.05668 5.07883 5.13134 5.30813 5.38984 5.52775 5.58527 5.61012 6.03022 6.28300 6.41526 6.56730 6.65591 7.16026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.071 4.071 3 Si 0.687 3.313 4 C -0.177 4.177 5 C 0.012 3.988 6 C -0.185 4.185 7 C 0.564 3.436 8 O -0.530 6.530 9 N -0.716 5.716 10 C 0.145 3.855 11 C -0.052 4.052 12 C -0.070 4.070 13 C -0.121 4.121 14 C -0.116 4.116 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.150 4.150 19 C 0.080 3.920 20 H 0.073 0.927 21 O -0.547 6.547 22 C -0.128 4.128 23 C 0.140 3.860 24 N -0.477 5.477 25 C 0.125 3.875 26 H 0.377 0.623 27 H 0.124 0.876 28 H -0.251 1.251 29 H -0.255 1.255 30 H 0.152 0.848 31 H 0.398 0.602 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.383 0.617 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.159 0.841 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -0.781 3.928 5.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.181 4.181 3 Si 0.587 3.413 4 C -0.180 4.180 5 C -0.015 4.015 6 C -0.191 4.191 7 C 0.350 3.650 8 O -0.406 6.406 9 N -0.368 5.368 10 C 0.022 3.978 11 C -0.052 4.052 12 C -0.070 4.070 13 C -0.139 4.139 14 C -0.134 4.134 15 C -0.140 4.140 16 C -0.134 4.134 17 C -0.129 4.129 18 C -0.188 4.188 19 C 0.021 3.979 20 H 0.091 0.909 21 O -0.353 6.353 22 C -0.166 4.166 23 C -0.019 4.019 24 N -0.185 5.185 25 C -0.031 4.031 26 H 0.225 0.775 27 H 0.142 0.858 28 H -0.175 1.175 29 H -0.180 1.180 30 H 0.170 0.830 31 H 0.233 0.767 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.232 0.768 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.176 0.824 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.607 0.288 3.264 4.873 hybrid contribution -1.324 -1.066 0.427 1.753 sum 2.283 -0.778 3.691 4.409 Atomic orbital electron populations 1.86647 1.17242 1.79935 1.49304 1.24994 0.84255 1.11223 0.97669 0.95023 0.91400 0.73956 0.80916 1.21349 1.02135 0.95354 0.99133 1.21636 0.91690 0.93236 0.94916 1.21051 1.04584 0.95131 0.98293 1.17939 0.79115 0.86362 0.81553 1.90816 1.40477 1.64493 1.44858 1.45735 1.57634 1.10967 1.22447 1.21276 1.01434 0.80104 0.95017 1.20926 0.90924 0.98543 0.94829 1.19577 0.93856 0.96465 0.97082 1.21061 0.94041 0.98856 0.99957 1.21178 0.94563 0.99065 0.98560 1.21217 1.00110 0.96005 0.96658 1.21191 0.94056 0.98758 0.99354 1.20973 0.94578 0.99078 0.98249 1.23674 0.99350 0.95616 1.00210 1.22635 0.84144 0.96461 0.94681 0.90917 1.86483 1.26378 1.46778 1.75684 1.23255 0.97297 0.98745 0.97272 1.23009 0.92161 0.89521 0.97223 1.67736 1.19469 1.10432 1.20823 1.22943 0.91587 1.00136 0.88442 0.77511 0.85813 1.17527 1.17978 0.83029 0.76667 0.88591 0.90999 0.85906 0.85913 0.86042 0.85995 0.86197 0.90094 0.88496 0.76833 0.87894 0.90026 0.82397 0.82025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.51 12.84 -35.23 -0.45 -0.97 16 2 C -0.07 0.05 2.82 36.00 0.10 0.15 16 3 Si 0.69 -1.22 29.91 -169.99 -5.08 -6.31 16 4 C -0.18 -0.03 5.35 -104.54 -0.56 -0.59 16 5 C 0.01 0.02 9.38 -38.87 -0.36 -0.34 16 6 C -0.19 -0.33 5.89 -104.82 -0.62 -0.94 16 7 C 0.56 1.78 7.78 -12.33 -0.10 1.68 16 8 O -0.53 -3.62 16.42 5.32 0.09 -3.53 16 9 N -0.72 -0.40 5.13 -61.26 -0.31 -0.71 16 10 C 0.14 0.09 4.83 -4.05 -0.02 0.07 16 11 C -0.05 0.08 0.63 -154.85 -0.10 -0.02 16 12 C -0.07 0.05 4.75 -104.63 -0.50 -0.45 16 13 C -0.12 0.13 9.05 -39.58 -0.36 -0.23 16 14 C -0.12 0.07 10.05 -39.58 -0.40 -0.33 16 15 C -0.12 0.02 10.05 -39.58 -0.40 -0.38 16 16 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 17 C -0.11 -0.01 9.30 -39.58 -0.37 -0.38 16 18 C -0.15 0.33 6.94 -25.92 -0.18 0.15 16 19 C 0.08 -0.17 5.28 -25.92 -0.14 -0.31 16 20 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 21 O -0.55 0.52 11.52 -35.23 -0.41 0.12 16 22 C -0.13 0.28 5.89 -25.92 -0.15 0.13 16 23 C 0.14 0.06 10.71 -17.13 -0.18 -0.12 16 24 N -0.48 -0.66 10.35 -12.91 -0.13 -0.79 16 25 C 0.13 0.01 9.84 -17.47 -0.17 -0.16 16 26 H 0.38 -0.73 8.70 45.56 0.40 -0.33 16 27 H 0.12 -0.17 7.96 -51.93 -0.41 -0.59 16 28 H -0.25 -0.39 7.11 56.52 0.40 0.02 16 29 H -0.25 0.04 7.01 56.52 0.40 0.43 16 30 H 0.15 0.37 7.74 -52.49 -0.41 -0.04 16 31 H 0.40 -0.61 6.05 -40.82 -0.25 -0.85 16 32 H 0.10 0.19 5.97 -51.93 -0.31 -0.12 16 33 H 0.07 0.13 7.91 -51.93 -0.41 -0.28 16 34 H 0.12 -0.35 6.45 -52.48 -0.34 -0.69 16 35 H 0.12 -0.26 8.06 -52.49 -0.42 -0.68 16 36 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 37 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 38 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 39 H 0.08 -0.17 8.10 -51.93 -0.42 -0.60 16 40 H 0.10 -0.24 8.10 -51.93 -0.42 -0.66 16 41 H 0.38 -1.73 9.12 45.56 0.42 -1.31 16 42 H 0.10 -0.33 6.83 -51.93 -0.35 -0.69 16 43 H 0.08 -0.13 7.61 -51.93 -0.40 -0.52 16 44 H 0.16 -0.36 6.42 -52.49 -0.34 -0.70 16 45 H 0.16 -0.33 4.85 -52.48 -0.25 -0.58 16 LS Contribution 371.03 15.07 5.59 5.59 Total: 0.00 -9.17 371.03 -10.42 -19.58 By element: Atomic # 1 Polarization: -5.69 SS G_CDS: -4.81 Total: -10.51 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -4.89 Total: -2.48 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -0.45 Total: -1.50 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.77 Total: -4.38 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.08 Total: -6.31 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -9.17 -10.42 -19.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13287814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.800 kcal (2) G-P(sol) polarization free energy of solvation -9.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds