Wall clock time and date at job start Sat Mar 6 2021 23:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36414 * 125.80283 * 2 1 4 4 C 1.47386 * 127.19206 * 0.02562 * 3 2 1 5 5 O 1.21610 * 119.99814 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00149 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99955 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.46989 * 175.22101 * 7 6 4 9 9 C 1.50699 * 112.84809 * 292.22692 * 8 7 6 10 10 C 1.38234 * 120.00280 * 113.51546 * 9 8 7 11 11 C 1.38239 * 120.00126 * 179.76058 * 10 9 8 12 12 C 1.38235 * 120.00032 * 0.51685 * 11 10 9 13 13 C 1.38244 * 119.99676 * 359.73817 * 12 11 10 14 14 C 1.38235 * 119.99969 * 0.02562 * 13 12 11 15 15 C 1.53779 * 113.61281 * 160.92145 * 8 7 6 16 16 C 1.53780 * 87.08200 * 270.87845 * 15 8 7 17 17 H 1.08991 * 113.61669 * 220.01672 * 16 15 8 18 18 O 1.42903 * 113.68539 * 89.12607 * 16 15 8 19 19 C 1.53782 * 113.61639 * 63.42054 * 8 7 6 20 20 C 1.47024 * 105.61943 * 179.97438 * 3 2 1 21 21 C 1.34172 * 105.94925 * 0.02562 * 20 3 2 22 22 C 1.50708 * 125.43405 * 179.97438 * 21 20 3 23 23 O 1.42897 * 109.46944 * 299.99779 * 22 21 20 24 24 Si 1.86302 * 109.47074 * 179.97438 * 22 21 20 25 25 O 1.33658 * 125.80356 * 180.21851 * 2 1 3 26 26 H 1.09006 * 109.46949 * 90.00237 * 1 2 3 27 27 H 1.09000 * 109.47123 * 210.00308 * 1 2 3 28 28 H 1.09002 * 109.47136 * 330.00344 * 1 2 3 29 29 H 0.96998 * 120.00094 * 0.02562 * 6 4 3 30 30 H 1.09002 * 109.46947 * 295.22033 * 7 6 4 31 31 H 1.08997 * 109.46731 * 55.21711 * 7 6 4 32 32 H 1.08000 * 119.99860 * 0.02562 * 10 9 8 33 33 H 1.07997 * 119.99943 * 180.22518 * 11 10 9 34 34 H 1.07997 * 120.00013 * 179.72204 * 12 11 10 35 35 H 1.07994 * 119.99551 * 179.97438 * 13 12 11 36 36 H 1.08005 * 119.99497 * 179.97438 * 14 13 12 37 37 H 1.09001 * 113.61737 * 25.43238 * 15 8 7 38 38 H 1.09000 * 113.61345 * 156.32996 * 15 8 7 39 39 H 0.96696 * 113.99940 * 82.47026 * 18 16 15 40 40 H 1.09004 * 113.61157 * 203.66060 * 19 8 7 41 41 H 1.08996 * 113.61316 * 334.48838 * 19 8 7 42 42 H 1.08000 * 127.02226 * 180.02562 * 20 3 2 43 43 H 1.09001 * 109.47100 * 60.00047 * 22 21 20 44 44 H 0.96697 * 114.00222 * 299.99500 * 23 22 21 45 45 H 1.48506 * 109.99950 * 58.68218 * 24 22 21 46 46 H 1.48494 * 110.00173 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5158 0.0005 5 8 0.6890 2.7892 0.0006 6 7 2.7930 3.5016 0.0010 7 6 2.3645 4.9025 0.0009 8 6 3.5899 5.8106 0.1217 9 6 4.2673 5.7039 1.4636 10 6 5.5389 5.1696 1.5554 11 6 6.1623 5.0762 2.7857 12 6 5.5099 5.5074 3.9256 13 6 4.2361 6.0369 3.8344 14 6 3.6147 6.1347 2.6035 15 6 3.3299 7.2587 -0.3259 16 6 3.7349 6.8111 -1.7403 17 1 4.3420 7.5431 -2.2728 18 8 2.6434 6.3214 -2.5219 19 6 4.5583 5.6999 -1.0678 20 6 3.6849 0.5991 0.0006 21 6 3.5859 -0.7390 0.0004 22 6 4.7459 -1.7010 0.0003 23 8 5.5426 -1.4863 -1.1664 24 14 4.1027 -3.4495 0.0007 25 8 2.2889 -1.0840 -0.0041 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 3.7381 3.2835 0.0006 30 1 1.8398 5.1220 -0.9290 31 1 1.6973 5.0784 0.8447 32 1 6.0471 4.8290 0.6653 33 1 7.1572 4.6621 2.8569 34 1 5.9951 5.4303 4.8873 35 1 3.7263 6.3733 4.7250 36 1 2.6194 6.5480 2.5324 37 1 2.2854 7.5598 -0.2454 38 1 4.0152 7.9820 0.1162 39 1 2.1218 7.0156 -2.9475 40 1 5.5794 5.9972 -0.8286 41 1 4.5063 4.7421 -1.5854 42 1 4.5928 1.1840 0.0012 43 1 5.3536 -1.5376 0.8903 44 1 5.0655 -1.6147 -1.9976 45 1 3.2464 -3.6759 -1.1913 46 1 5.2369 -4.4079 0.0012 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_13308374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:27 Heat of formation + Delta-G solvation = -41.671484 kcal Electronic energy + Delta-G solvation = -30613.140879 eV Core-core repulsion = 26437.098632 eV Total energy + Delta-G solvation = -4176.042247 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.78687 -41.87577 -40.22754 -39.27648 -38.17087 -36.42652 -35.09364 -34.11036 -33.12392 -31.91365 -31.71800 -29.70491 -28.56748 -26.97916 -25.81357 -24.85436 -23.88824 -23.20787 -22.39795 -22.00838 -20.97697 -19.76458 -18.97466 -18.61890 -18.00831 -17.74023 -17.68490 -16.96571 -16.80955 -16.51711 -16.07774 -15.94924 -15.81512 -15.74152 -15.47945 -15.22129 -14.75022 -14.43434 -14.27377 -14.15655 -14.14585 -14.04720 -13.94049 -13.83065 -13.61777 -13.16811 -13.06221 -12.94440 -12.84160 -12.71638 -12.22782 -12.18318 -11.89308 -11.61223 -11.30809 -11.14723 -10.97911 -10.75277 -10.70867 -10.09527 -9.82719 -9.61459 -9.58886 -4.94353 0.21342 0.42715 0.48942 0.80216 1.17036 1.40828 1.69469 1.90432 2.12283 2.23909 2.83201 3.15077 3.15275 3.35330 3.37634 3.51604 3.67284 3.72855 3.74758 3.77517 3.99126 4.10773 4.12805 4.14778 4.27400 4.37671 4.42800 4.45607 4.52839 4.57848 4.61615 4.65164 4.68798 4.73202 4.77338 4.82121 4.87333 4.98714 5.07784 5.11251 5.14409 5.17846 5.19155 5.20201 5.37623 5.58831 5.63725 5.67110 5.86365 6.10339 6.32361 6.45036 6.87074 7.13031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.269 4.269 4 C 0.586 3.414 5 O -0.576 6.576 6 N -0.704 5.704 7 C 0.150 3.850 8 C -0.046 4.046 9 C -0.071 4.071 10 C -0.124 4.124 11 C -0.124 4.124 12 C -0.134 4.134 13 C -0.129 4.129 14 C -0.126 4.126 15 C -0.146 4.146 16 C 0.080 3.920 17 H 0.087 0.913 18 O -0.567 6.567 19 C -0.126 4.126 20 C -0.149 4.149 21 C -0.056 4.056 22 C -0.033 4.033 23 O -0.533 6.533 24 Si 0.771 3.229 25 O -0.170 6.170 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.407 0.593 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.396 0.604 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.172 0.828 43 H 0.157 0.843 44 H 0.390 0.610 45 H -0.294 1.294 46 H -0.280 1.280 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 1.555 1.189 3.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.032 3.968 3 C -0.274 4.274 4 C 0.375 3.625 5 O -0.458 6.458 6 N -0.354 5.354 7 C 0.027 3.973 8 C -0.046 4.046 9 C -0.071 4.071 10 C -0.141 4.141 11 C -0.141 4.141 12 C -0.152 4.152 13 C -0.147 4.147 14 C -0.144 4.144 15 C -0.184 4.184 16 C 0.021 3.979 17 H 0.105 0.895 18 O -0.376 6.376 19 C -0.163 4.163 20 C -0.168 4.168 21 C -0.103 4.103 22 C -0.142 4.142 23 O -0.341 6.341 24 Si 0.674 3.326 25 O -0.067 6.067 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.243 0.757 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.247 0.753 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.190 0.810 43 H 0.174 0.826 44 H 0.240 0.760 45 H -0.221 1.221 46 H -0.206 1.206 Dipole moment (debyes) X Y Z Total from point charges 2.851 0.279 1.405 3.191 hybrid contribution 0.269 1.231 -1.131 1.693 sum 3.121 1.510 0.275 3.477 Atomic orbital electron populations 1.20707 0.82523 1.05711 1.05092 1.23212 0.94787 0.82916 0.95860 1.21220 0.94365 0.93437 1.18346 1.17377 0.85173 0.84471 0.75473 1.90741 1.17865 1.84605 1.52596 1.45551 1.09817 1.05745 1.74334 1.21143 0.95146 0.78806 1.02192 1.20811 0.95023 0.97099 0.91696 1.19648 0.94722 0.98846 0.93860 1.21276 0.94647 0.99716 0.98498 1.21434 1.00679 0.99480 0.92549 1.21438 0.95274 0.98962 0.99504 1.21377 0.95790 0.99608 0.97937 1.21113 1.00082 1.00611 0.92602 1.23660 1.03314 0.94337 0.97061 1.22694 0.88632 0.96252 0.90312 0.89497 1.86456 1.44771 1.38807 1.67548 1.23289 0.98693 0.99971 0.94383 1.22735 0.96245 0.93760 1.04084 1.22849 0.82928 0.95804 1.08766 1.24522 0.90005 1.07070 0.92612 1.86634 1.39315 1.91733 1.16416 0.93499 0.78903 0.72092 0.88084 1.83675 1.16738 1.34864 1.71446 0.88571 0.87845 0.88564 0.75693 0.90107 0.92763 0.84341 0.84445 0.84955 0.85285 0.86266 0.90336 0.87854 0.75320 0.86490 0.90904 0.81024 0.82558 0.76004 1.22101 1.20632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 9.89 71.23 0.70 0.52 16 2 C 0.09 0.48 7.37 25.26 0.19 0.66 16 3 C -0.27 -1.84 6.31 -18.99 -0.12 -1.96 16 4 C 0.59 5.76 7.81 86.65 0.68 6.44 16 5 O -0.58 -9.11 14.84 -4.06 -0.06 -9.17 16 6 N -0.70 -3.26 5.17 -466.41 -2.41 -5.67 16 7 C 0.15 0.63 4.83 86.38 0.42 1.05 16 8 C -0.05 0.05 0.63 -52.40 -0.03 0.02 16 9 C -0.07 -0.01 4.75 -19.87 -0.09 -0.11 16 10 C -0.12 0.16 9.05 22.27 0.20 0.36 16 11 C -0.12 0.09 10.05 22.27 0.22 0.31 16 12 C -0.13 -0.08 10.05 22.27 0.22 0.15 16 13 C -0.13 -0.22 10.05 22.27 0.22 0.00 16 14 C -0.13 -0.26 9.30 22.27 0.21 -0.06 16 15 C -0.15 0.48 6.94 31.12 0.22 0.69 16 16 C 0.08 -0.28 5.27 31.12 0.16 -0.11 16 17 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 18 O -0.57 0.26 11.53 -148.98 -1.72 -1.46 16 19 C -0.13 0.40 5.89 31.12 0.18 0.58 16 20 C -0.15 -0.36 10.46 23.65 0.25 -0.11 16 21 C -0.06 -0.08 6.20 24.76 0.15 0.07 16 22 C -0.03 0.07 2.97 71.24 0.21 0.29 16 23 O -0.53 0.17 12.86 -148.98 -1.92 -1.75 16 24 Si 0.77 -1.46 32.09 68.60 2.20 0.74 16 25 O -0.17 -0.62 8.89 4.45 0.04 -0.58 16 26 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 27 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.10 0.54 6.48 -2.39 -0.02 0.53 16 29 H 0.41 0.33 7.15 -92.71 -0.66 -0.33 16 30 H 0.08 0.58 5.97 -2.39 -0.01 0.57 16 31 H 0.05 0.39 7.91 -2.39 -0.02 0.38 16 32 H 0.14 -0.72 6.44 -2.91 -0.02 -0.74 16 33 H 0.14 -0.61 8.06 -2.91 -0.02 -0.63 16 34 H 0.13 -0.33 8.06 -2.91 -0.02 -0.36 16 35 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 36 H 0.12 0.16 8.06 -2.91 -0.02 0.13 16 37 H 0.08 -0.21 8.10 -2.39 -0.02 -0.23 16 38 H 0.10 -0.46 8.10 -2.39 -0.02 -0.48 16 39 H 0.40 -3.10 9.12 -74.06 -0.68 -3.78 16 40 H 0.12 -0.73 6.83 -2.38 -0.02 -0.75 16 41 H 0.07 -0.08 7.61 -2.39 -0.02 -0.09 16 42 H 0.17 -0.29 7.74 -2.91 -0.02 -0.32 16 43 H 0.16 -0.97 7.96 -2.39 -0.02 -0.98 16 44 H 0.39 -1.92 8.70 -74.06 -0.64 -2.57 16 45 H -0.29 -1.33 7.11 99.48 0.71 -0.62 16 46 H -0.28 -0.94 7.11 99.48 0.71 -0.24 16 Total: 0.00 -19.75 382.21 -0.77 -20.52 By element: Atomic # 1 Polarization: -10.54 SS G_CDS: -0.90 Total: -11.44 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 3.99 Total: 8.81 kcal Atomic # 7 Polarization: -3.26 SS G_CDS: -2.41 Total: -5.67 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -3.66 Total: -12.96 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.20 Total: 0.74 kcal Total: -19.75 -0.77 -20.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13308374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.150 kcal (2) G-P(sol) polarization free energy of solvation -19.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds