Wall clock time and date at job start Sat Mar 6 2021 23:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37786 * 119.85332 * 2 1 4 4 C 1.39706 * 119.90826 * 179.97438 * 3 2 1 5 5 C 1.47535 * 120.18896 * 179.97438 * 4 3 2 6 6 O 1.21589 * 120.00164 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00398 * 0.02562 * 5 4 3 8 8 C 1.46500 * 120.00280 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46805 * 176.19796 * 8 7 5 10 10 C 1.50699 * 112.85108 * 73.43436 * 9 8 7 11 11 C 1.38238 * 119.99438 * 246.01127 * 10 9 8 12 12 C 1.38244 * 119.99722 * 179.74306 * 11 10 9 13 13 C 1.38237 * 119.99756 * 0.54791 * 12 11 10 14 14 C 1.38236 * 120.00129 * 359.70503 * 13 12 11 15 15 C 1.38232 * 120.00635 * 66.28216 * 10 9 8 16 16 C 1.53782 * 113.61602 * 302.22975 * 9 8 7 17 17 C 1.53781 * 87.08201 * 270.88786 * 16 9 8 18 18 H 1.08995 * 113.61390 * 220.02010 * 17 16 9 19 19 O 1.42901 * 113.61553 * 89.11580 * 17 16 9 20 20 C 1.53785 * 87.08296 * 334.56591 * 17 16 9 21 21 C 1.40138 * 119.62176 * 0.02562 * 4 3 2 22 22 O 1.35642 * 120.15274 * 179.72350 * 21 4 3 23 23 C 1.38708 * 119.69349 * 0.02562 * 21 4 3 24 24 C 1.50702 * 119.95345 * 179.97438 * 23 21 4 25 25 O 1.42904 * 109.46928 * 284.99525 * 24 23 21 26 26 Si 1.86298 * 109.47070 * 165.00122 * 24 23 21 27 27 C 1.38051 * 120.08990 * 359.97438 * 23 21 4 28 28 H 1.08997 * 109.47043 * 89.99723 * 1 2 3 29 29 H 1.08996 * 109.46844 * 209.99993 * 1 2 3 30 30 H 1.08998 * 109.46795 * 330.00021 * 1 2 3 31 31 H 1.07997 * 120.04301 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99558 * 0.02562 * 7 5 4 33 33 H 1.08997 * 109.46756 * 296.19268 * 8 7 5 34 34 H 1.08998 * 109.47405 * 56.19434 * 8 7 5 35 35 H 1.07995 * 120.00347 * 359.97438 * 11 10 9 36 36 H 1.07992 * 120.00004 * 180.27337 * 12 11 10 37 37 H 1.07998 * 119.99759 * 179.72582 * 13 12 11 38 38 H 1.07999 * 120.00002 * 179.97438 * 14 13 12 39 39 H 1.08005 * 119.99711 * 0.02562 * 15 10 9 40 40 H 1.09000 * 113.61079 * 25.43598 * 16 9 8 41 41 H 1.09003 * 113.61368 * 156.25399 * 16 9 8 42 42 H 0.96698 * 114.00137 * 180.02562 * 19 17 16 43 43 H 1.08998 * 113.61689 * 270.88728 * 20 17 16 44 44 H 1.08996 * 113.61489 * 139.98017 * 20 17 16 45 45 H 0.96700 * 114.00668 * 90.00202 * 22 21 4 46 46 H 1.08995 * 109.47249 * 45.00172 * 24 23 21 47 47 H 0.96696 * 114.00361 * 300.00041 * 25 24 23 48 48 H 1.48499 * 110.00332 * 180.02562 * 26 24 23 49 49 H 1.48502 * 109.99827 * 301.31814 * 26 24 23 50 50 H 1.08003 * 119.80933 * 179.97438 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1950 0.0000 4 6 3.5900 1.1964 0.0005 5 6 4.3306 2.4723 0.0000 6 8 5.5465 2.4695 0.0000 7 7 3.6596 3.6411 -0.0005 8 6 4.3950 4.9081 -0.0017 9 6 3.4062 6.0717 -0.0977 10 6 2.6508 6.3052 1.1852 11 6 1.2858 6.0917 1.2322 12 6 0.5937 6.3008 2.4105 13 6 1.2648 6.7342 3.5387 14 6 2.6289 6.9527 3.4902 15 6 3.3219 6.7382 2.3135 16 6 2.5041 6.0124 -1.3418 17 6 3.5958 6.8099 -2.0746 18 1 3.2027 7.5760 -2.7428 19 8 4.5873 5.9876 -2.6935 20 6 4.0156 7.3501 -0.6973 21 6 4.2838 -0.0212 0.0005 22 8 5.6402 -0.0325 -0.0046 23 6 3.5771 -1.2148 -0.0005 24 6 4.3173 -2.5275 -0.0011 25 8 4.8554 -2.7703 -1.3025 26 14 3.1442 -3.9020 0.4520 27 6 2.1966 -1.2017 -0.0011 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6512 2.1293 0.0004 32 1 2.6896 3.6434 -0.0002 33 1 4.9701 4.9952 0.9202 34 1 5.0716 4.9348 -0.8558 35 1 0.7607 5.7581 0.3494 36 1 -0.4719 6.1298 2.4484 37 1 0.7234 6.9018 4.4580 38 1 3.1531 7.2917 4.3715 39 1 4.3876 6.9096 2.2755 40 1 2.3637 5.0043 -1.7316 41 1 1.5665 6.5565 -1.2275 42 1 5.2769 6.4835 -3.1557 43 1 3.4918 8.2609 -0.4074 44 1 5.0953 7.4217 -0.5670 45 1 6.0369 -0.0339 0.8773 46 1 5.1284 -2.4876 0.7259 47 1 4.1886 -2.8184 -2.0012 48 1 3.8621 -5.2020 0.4556 49 1 2.5534 -3.6450 1.7900 50 1 1.6509 -2.1338 -0.0023 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_13422088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:39 Heat of formation + Delta-G solvation = -74.185550 kcal Electronic energy + Delta-G solvation = -34389.441600 eV Core-core repulsion = 29928.225677 eV Total energy + Delta-G solvation = -4461.215922 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.07089 -41.47559 -39.89519 -39.26711 -38.08711 -37.64302 -36.40948 -35.08127 -33.06729 -32.87681 -31.90213 -31.71772 -28.74819 -27.49476 -26.97643 -26.79119 -25.29014 -24.19615 -23.20678 -22.35645 -21.98987 -21.45795 -20.07135 -19.55710 -18.63101 -18.41708 -17.99070 -17.69557 -17.45385 -16.85682 -16.51689 -16.49747 -16.15308 -15.97150 -15.79504 -15.73948 -15.40519 -15.24616 -14.96239 -14.76352 -14.44017 -14.41686 -14.21589 -14.14718 -14.05516 -13.65892 -13.59677 -13.34120 -13.20844 -13.06338 -12.83922 -12.71740 -12.52848 -12.23485 -12.19443 -12.10419 -11.89392 -11.76294 -11.61892 -11.25578 -11.00684 -10.73592 -10.41222 -10.26382 -10.00111 -9.82688 -9.61995 -9.51410 -5.04254 -0.36297 0.05584 0.41919 0.48740 1.25280 1.62993 1.70574 1.93328 2.02860 2.54696 2.82652 3.13820 3.15099 3.34613 3.39138 3.46200 3.55615 3.63754 3.72244 3.74386 3.79990 3.95750 4.11231 4.12781 4.14657 4.18151 4.27504 4.33140 4.41767 4.47782 4.52067 4.60667 4.62765 4.68244 4.72977 4.80859 4.81836 4.84978 4.92829 4.97443 4.98577 5.07089 5.13884 5.16088 5.17826 5.19756 5.27196 5.31726 5.41876 5.58469 5.63704 5.66756 5.68269 6.10087 6.41160 6.66379 6.75285 6.85422 7.11762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C -0.065 4.065 4 C -0.181 4.181 5 C 0.552 3.448 6 O -0.568 6.568 7 N -0.705 5.705 8 C 0.151 3.849 9 C -0.045 4.045 10 C -0.073 4.073 11 C -0.121 4.121 12 C -0.121 4.121 13 C -0.134 4.134 14 C -0.131 4.131 15 C -0.128 4.128 16 C -0.124 4.124 17 C 0.078 3.922 18 H 0.088 0.912 19 O -0.569 6.569 20 C -0.148 4.148 21 C 0.158 3.842 22 O -0.491 6.491 23 C -0.158 4.158 24 C -0.077 4.077 25 O -0.555 6.555 26 Si 0.794 3.206 27 C -0.070 4.070 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.408 0.592 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.395 0.605 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.398 0.602 46 H 0.095 0.905 47 H 0.392 0.608 48 H -0.300 1.300 49 H -0.276 1.276 50 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 2.874 -0.480 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.091 4.091 3 C -0.083 4.083 4 C -0.185 4.185 5 C 0.341 3.659 6 O -0.448 6.448 7 N -0.357 5.357 8 C 0.027 3.973 9 C -0.045 4.045 10 C -0.073 4.073 11 C -0.139 4.139 12 C -0.139 4.139 13 C -0.152 4.152 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.161 4.161 17 C 0.019 3.981 18 H 0.106 0.894 19 O -0.377 6.377 20 C -0.186 4.186 21 C 0.112 3.888 22 O -0.302 6.302 23 C -0.159 4.159 24 C -0.186 4.186 25 O -0.362 6.362 26 Si 0.698 3.302 27 C -0.087 4.087 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.170 0.830 32 H 0.246 0.754 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.140 0.860 42 H 0.245 0.755 43 H 0.123 0.877 44 H 0.093 0.907 45 H 0.256 0.744 46 H 0.113 0.887 47 H 0.242 0.758 48 H -0.228 1.228 49 H -0.202 1.202 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.337 1.827 0.058 10.498 hybrid contribution 1.464 1.115 0.786 2.001 sum -8.873 2.942 0.843 9.386 Atomic orbital electron populations 1.20941 0.87543 1.04679 1.04177 1.20163 0.98373 0.91510 0.99067 1.21388 0.90879 0.99932 0.96119 1.20428 0.95209 0.92451 1.10389 1.18372 0.86938 0.84422 0.76215 1.90795 1.15047 1.87989 1.50939 1.45642 1.10674 1.04821 1.74545 1.21098 0.93667 0.80968 1.01528 1.20785 0.96096 0.95599 0.92065 1.19662 0.94166 0.99457 0.94025 1.21313 0.93258 1.00376 0.98957 1.21461 1.01009 0.98719 0.92733 1.21452 0.94593 0.99638 0.99531 1.21365 0.95143 1.00186 0.98164 1.21102 1.00051 1.00274 0.93138 1.23298 0.97509 1.02188 0.93117 1.22727 0.89794 0.93052 0.92532 0.89374 1.86481 1.40673 1.37597 1.72960 1.23683 1.01845 0.96452 0.96589 1.18593 0.83483 0.90967 0.95773 1.84769 1.15559 1.96087 1.33832 1.20793 0.94984 0.95024 1.05146 1.25332 1.04224 1.00048 0.88957 1.86533 1.38617 1.94243 1.16854 0.93793 0.80851 0.72825 0.82725 1.21322 0.91660 0.99505 0.96227 0.89207 0.89624 0.90150 0.82987 0.75431 0.93280 0.90559 0.83769 0.84062 0.84980 0.85500 0.86551 0.90644 0.85975 0.75454 0.87694 0.90745 0.74383 0.88750 0.75808 1.22775 1.20246 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.20 10.00 71.24 0.71 1.91 16 2 C -0.09 0.37 5.87 -19.89 -0.12 0.25 16 3 C -0.06 0.06 9.18 22.52 0.21 0.27 16 4 C -0.18 -1.26 5.89 -20.01 -0.12 -1.37 16 5 C 0.55 6.18 7.76 86.70 0.67 6.85 16 6 O -0.57 -11.31 15.16 16.92 0.26 -11.05 16 7 N -0.70 -3.07 5.03 -466.27 -2.34 -5.41 16 8 C 0.15 0.74 4.86 86.38 0.42 1.16 16 9 C -0.05 0.07 0.65 -52.40 -0.03 0.03 16 10 C -0.07 0.06 4.85 -19.87 -0.10 -0.04 16 11 C -0.12 0.41 9.05 22.27 0.20 0.61 16 12 C -0.12 0.33 10.05 22.27 0.22 0.55 16 13 C -0.13 0.09 10.05 22.27 0.22 0.31 16 14 C -0.13 -0.14 10.05 22.27 0.22 0.09 16 15 C -0.13 -0.20 9.23 22.27 0.21 0.00 16 16 C -0.12 0.52 5.87 31.12 0.18 0.70 16 17 C 0.08 -0.26 5.28 31.12 0.16 -0.09 16 18 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 19 O -0.57 -0.48 11.58 -148.98 -1.72 -2.21 16 20 C -0.15 0.45 6.92 31.12 0.22 0.66 16 21 C 0.16 1.40 6.69 22.84 0.15 1.55 16 22 O -0.49 -6.47 10.91 -68.65 -0.75 -7.22 16 23 C -0.16 -0.47 5.27 -19.80 -0.10 -0.58 16 24 C -0.08 -0.22 2.38 71.24 0.17 -0.05 16 25 O -0.55 -3.01 12.88 -148.98 -1.92 -4.93 16 26 Si 0.79 -1.89 29.91 68.60 2.05 0.16 16 27 C -0.07 0.21 8.30 22.30 0.19 0.40 16 28 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 29 H 0.08 -1.03 8.08 -2.39 -0.02 -1.05 16 30 H 0.08 -0.93 8.08 -2.39 -0.02 -0.95 16 31 H 0.15 -1.01 6.40 -2.91 -0.02 -1.03 16 32 H 0.41 -0.55 5.92 -92.71 -0.55 -1.10 16 33 H 0.05 0.39 7.80 -2.39 -0.02 0.38 16 34 H 0.08 0.71 6.06 -2.39 -0.01 0.69 16 35 H 0.14 -1.18 6.42 -2.91 -0.02 -1.20 16 36 H 0.14 -0.98 8.06 -2.91 -0.02 -1.00 16 37 H 0.13 -0.48 8.06 -2.91 -0.02 -0.50 16 38 H 0.13 -0.14 8.06 -2.91 -0.02 -0.17 16 39 H 0.12 0.16 8.06 -2.91 -0.02 0.13 16 40 H 0.07 -0.19 7.36 -2.39 -0.02 -0.20 16 41 H 0.12 -1.00 6.80 -2.39 -0.02 -1.01 16 42 H 0.40 -2.45 9.12 -74.06 -0.68 -3.12 16 43 H 0.10 -0.48 8.10 -2.39 -0.02 -0.50 16 44 H 0.07 -0.13 8.10 -2.39 -0.02 -0.15 16 45 H 0.40 2.83 9.06 -74.06 -0.67 2.16 16 46 H 0.09 0.49 7.83 -2.39 -0.02 0.47 16 47 H 0.39 -1.40 8.70 -74.06 -0.64 -2.04 16 48 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 49 H -0.28 -0.31 7.11 99.48 0.71 0.40 16 50 H 0.17 -1.63 5.10 -2.91 -0.01 -1.64 16 Total: 0.00 -29.29 405.32 -2.21 -31.50 By element: Atomic # 1 Polarization: -12.59 SS G_CDS: -1.47 Total: -14.06 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 3.69 Total: 13.22 kcal Atomic # 7 Polarization: -3.07 SS G_CDS: -2.34 Total: -5.41 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -4.14 Total: -25.41 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 2.05 Total: 0.16 kcal Total: -29.29 -2.21 -31.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13422088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.681 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds