Wall clock time and date at job start Sat Mar 6 2021 23:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00010 * 2 1 4 4 C 1.39043 * 110.99949 * 236.04853 * 2 1 3 5 5 C 1.39204 * 119.92904 * 239.99847 * 4 2 1 6 6 C 1.50700 * 119.96660 * 0.02562 * 5 4 2 7 7 O 1.42901 * 109.47294 * 74.99654 * 6 5 4 8 8 Si 1.86298 * 109.47225 * 194.99834 * 6 5 4 9 9 C 1.37629 * 120.06737 * 179.97438 * 5 4 2 10 10 C 1.39771 * 119.93242 * 0.02562 * 9 5 4 11 11 C 1.47527 * 120.07140 * 179.97438 * 10 9 5 12 12 O 1.21594 * 119.99379 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99959 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99719 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47449 * 176.14435 * 14 13 11 16 16 C 1.50701 * 112.84819 * 73.47275 * 15 14 13 17 17 C 1.38242 * 119.99783 * 246.01085 * 16 15 14 18 18 C 1.38238 * 119.99762 * 179.74082 * 17 16 15 19 19 C 1.38241 * 119.99840 * 0.55882 * 18 17 16 20 20 C 1.38233 * 119.99657 * 359.69798 * 19 18 17 21 21 C 1.38232 * 120.00704 * 0.02562 * 20 19 18 22 22 C 1.53781 * 113.61179 * 302.28033 * 15 14 13 23 23 C 1.53779 * 87.08162 * 270.88113 * 22 15 14 24 24 H 1.08999 * 113.61141 * 220.02261 * 23 22 15 25 25 O 1.42894 * 113.61722 * 89.11604 * 23 22 15 26 26 C 1.53777 * 113.61903 * 204.78073 * 15 14 13 27 27 C 1.39818 * 119.86549 * 0.02562 * 10 9 5 28 28 C 1.37597 * 119.92461 * 359.69825 * 27 10 9 29 29 H 1.08994 * 109.47099 * 183.95588 * 1 2 3 30 30 H 1.08998 * 109.47149 * 63.95068 * 1 2 3 31 31 H 1.09010 * 109.46957 * 303.95162 * 1 2 3 32 32 H 1.09000 * 109.47293 * 60.00168 * 3 2 1 33 33 H 1.09003 * 109.47304 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47184 * 300.00335 * 3 2 1 35 35 H 1.08997 * 109.46928 * 315.00015 * 6 5 4 36 36 H 0.96697 * 114.00151 * 300.00629 * 7 6 5 37 37 H 1.48505 * 109.99705 * 59.99769 * 8 6 5 38 38 H 1.48493 * 110.00026 * 181.31761 * 8 6 5 39 39 H 1.08005 * 120.03325 * 180.02562 * 9 5 4 40 40 H 0.96994 * 119.99992 * 0.02562 * 13 11 10 41 41 H 1.09006 * 109.47543 * 296.14523 * 14 13 11 42 42 H 1.09004 * 109.46946 * 56.14186 * 14 13 11 43 43 H 1.07993 * 120.00407 * 0.02562 * 17 16 15 44 44 H 1.08001 * 119.99924 * 180.27295 * 18 17 16 45 45 H 1.07993 * 119.99781 * 179.71793 * 19 18 17 46 46 H 1.08009 * 119.99482 * 180.02562 * 20 19 18 47 47 H 1.07996 * 120.00254 * 179.97438 * 21 20 19 48 48 H 1.09003 * 113.61734 * 25.43406 * 22 15 14 49 49 H 1.09007 * 113.61540 * 156.33193 * 22 15 14 50 50 H 0.96699 * 114.00626 * 180.02562 * 25 23 22 51 51 H 1.09004 * 113.61714 * 203.66194 * 26 15 14 52 52 H 1.08993 * 113.61203 * 334.56739 * 26 15 14 53 53 H 1.07993 * 120.03525 * 180.02562 * 27 10 9 54 54 H 1.07995 * 119.96328 * 180.31675 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 2.7793 -1.8330 -0.8518 6 6 3.1166 -2.2453 0.5579 7 8 1.9812 -2.8756 1.1544 8 14 4.5466 -3.4391 0.5305 9 6 3.2736 -2.5530 -1.9155 10 6 2.9600 -2.1702 -3.2227 11 6 3.4886 -2.9394 -4.3652 12 8 4.1984 -3.9072 -4.1701 13 7 3.1848 -2.5694 -5.6250 14 6 3.7103 -3.3329 -6.7595 15 6 3.1423 -2.7666 -8.0624 16 6 3.7544 -1.4426 -8.4409 17 6 2.9781 -0.2988 -8.4472 18 6 3.5408 0.9166 -8.7892 19 6 4.8772 0.9864 -9.1362 20 6 5.6521 -0.1583 -9.1350 21 6 5.0908 -1.3728 -8.7875 22 6 1.6055 -2.7734 -8.1187 23 6 1.7120 -4.1861 -8.7169 24 1 1.0001 -4.3747 -9.5205 25 8 1.7299 -5.2238 -7.7347 26 6 3.1106 -3.7846 -9.2146 27 6 2.1450 -1.0562 -3.4454 28 6 1.6492 -0.3439 -2.3776 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 1.6460 1.8948 0.8900 33 1 3.0851 1.3424 0.0005 34 1 1.6459 1.8948 -0.8899 35 1 3.3898 -1.3643 1.1386 36 1 1.1977 -2.3110 1.2019 37 1 5.7336 -2.7955 -0.0875 38 1 4.8684 -3.8778 1.9122 39 1 3.9033 -3.4128 -1.7403 40 1 2.6189 -1.7972 -5.7806 41 1 4.7977 -3.2591 -6.7749 42 1 3.4186 -4.3785 -6.6601 43 1 1.9330 -0.3540 -8.1805 44 1 2.9354 1.8110 -8.7899 45 1 5.3157 1.9351 -9.4078 46 1 6.6963 -0.1038 -9.4057 47 1 5.6962 -2.2671 -8.7870 48 1 1.1325 -2.7494 -7.1369 49 1 1.1905 -2.0376 -8.8076 50 1 1.7972 -6.1146 -8.1048 51 1 3.1071 -3.3253 -10.2031 52 1 3.8526 -4.5770 -9.1175 53 1 1.9005 -0.7583 -4.4543 54 1 1.0155 0.5136 -2.5489 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_13422196.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:43 Heat of formation + Delta-G solvation = -12.337804 kcal Electronic energy + Delta-G solvation = -36278.266322 eV Core-core repulsion = 31761.913362 eV Total energy + Delta-G solvation = -4516.352960 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.193 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.03436 -41.50261 -40.23916 -39.26626 -37.71624 -37.32216 -36.41930 -35.10053 -32.87072 -31.93038 -31.72447 -31.42184 -28.72543 -28.58732 -26.98276 -26.93378 -25.93016 -24.58265 -23.30956 -23.16156 -22.85928 -22.31176 -21.15516 -20.04683 -19.05085 -18.60307 -18.07070 -17.82533 -17.65422 -17.41545 -16.56640 -16.51859 -16.39426 -16.11990 -15.97253 -15.76977 -15.74265 -15.34615 -15.22887 -15.17720 -14.91503 -14.56631 -14.40985 -14.25992 -14.16000 -14.06652 -13.95148 -13.65768 -13.44121 -13.19634 -13.09810 -13.05270 -12.97333 -12.73428 -12.69644 -12.64148 -12.21867 -12.21265 -11.87845 -11.59876 -11.42442 -11.32248 -11.20735 -11.03151 -10.70539 -10.17991 -10.11090 -9.83118 -9.78860 -9.63119 -9.60956 -4.93451 -0.42239 0.12606 0.42693 0.49278 1.31712 1.52722 1.66670 1.83807 2.01869 2.61475 2.71429 2.83565 3.18430 3.37534 3.47602 3.49626 3.62106 3.68837 3.75428 3.78009 3.89640 3.99479 4.00462 4.10424 4.13702 4.15403 4.17090 4.28001 4.34449 4.38229 4.42523 4.45937 4.54347 4.57700 4.63311 4.64067 4.69496 4.72867 4.75842 4.84868 4.88278 4.92521 4.97386 4.99727 5.01905 5.08220 5.12295 5.15054 5.18275 5.19761 5.22388 5.32603 5.50659 5.59109 5.64198 5.67541 5.75651 6.10617 6.18258 6.41871 6.63801 6.90083 7.10135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.527 5.527 3 C 0.026 3.974 4 C 0.126 3.874 5 C -0.111 4.111 6 C -0.056 4.056 7 O -0.543 6.543 8 Si 0.769 3.231 9 C -0.059 4.059 10 C -0.145 4.145 11 C 0.555 3.445 12 O -0.575 6.575 13 N -0.703 5.703 14 C 0.148 3.852 15 C -0.046 4.046 16 C -0.072 4.072 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.135 4.135 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.125 4.125 23 C 0.079 3.921 24 H 0.086 0.914 25 O -0.567 6.567 26 C -0.147 4.147 27 C -0.061 4.061 28 C -0.149 4.149 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.374 0.626 37 H -0.276 1.276 38 H -0.283 1.283 39 H 0.136 0.864 40 H 0.409 0.591 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.119 0.881 48 H 0.077 0.923 49 H 0.119 0.881 50 H 0.396 0.604 51 H 0.102 0.898 52 H 0.076 0.924 53 H 0.154 0.846 54 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 5.409 -5.934 9.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.248 5.248 3 C -0.120 4.120 4 C 0.032 3.968 5 C -0.113 4.113 6 C -0.166 4.166 7 O -0.350 6.350 8 Si 0.673 3.327 9 C -0.078 4.078 10 C -0.148 4.148 11 C 0.343 3.657 12 O -0.455 6.455 13 N -0.355 5.355 14 C 0.025 3.975 15 C -0.046 4.046 16 C -0.072 4.072 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.153 4.153 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.162 4.162 23 C 0.020 3.980 24 H 0.104 0.896 25 O -0.375 6.375 26 C -0.185 4.185 27 C -0.080 4.080 28 C -0.169 4.169 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.224 0.776 37 H -0.202 1.202 38 H -0.210 1.210 39 H 0.154 0.846 40 H 0.246 0.754 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.137 0.863 48 H 0.095 0.905 49 H 0.137 0.863 50 H 0.246 0.754 51 H 0.121 0.879 52 H 0.095 0.905 53 H 0.172 0.828 54 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.107 4.364 -4.665 7.594 hybrid contribution -0.515 1.679 -0.771 1.919 sum -4.622 6.043 -5.437 9.351 Atomic orbital electron populations 1.22599 0.83884 1.03429 1.02445 1.59457 1.10017 1.15187 1.40177 1.22512 1.00491 0.86442 1.02572 1.18944 0.94832 0.93092 0.89952 1.20194 0.99426 0.95810 0.95849 1.25116 0.97529 1.03892 0.90027 1.86691 1.22632 1.43360 1.82332 0.92228 0.73077 0.86483 0.80941 1.21061 0.97344 0.98129 0.91288 1.19887 1.03171 0.98892 0.92892 1.18377 0.79979 0.83662 0.83644 1.90782 1.39487 1.29360 1.85917 1.45643 1.52340 1.32783 1.04700 1.21160 0.97176 0.96305 0.82862 1.20802 0.96308 0.92795 0.94716 1.19676 0.93693 0.94399 0.99422 1.21304 1.00700 0.91663 1.00321 1.21447 0.95323 0.98560 0.98803 1.21439 0.94860 0.98871 1.00156 1.21371 1.00566 0.92959 0.99951 1.21120 0.95216 0.98090 1.00014 1.23296 0.93653 0.96134 1.03126 1.22699 0.95945 0.88415 0.90935 0.89574 1.86468 1.96398 1.18923 1.35714 1.23675 0.98965 0.98168 0.97727 1.21398 0.93720 0.92285 1.00589 1.21805 1.01579 1.01473 0.92054 0.90827 0.93779 0.89304 0.89366 0.92020 0.93663 0.90154 0.77640 1.20185 1.21011 0.84631 0.75358 0.92966 0.89922 0.83866 0.84332 0.85130 0.85479 0.86274 0.90463 0.86301 0.75392 0.87917 0.90503 0.82840 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.12 9.20 127.69 1.17 1.05 16 2 N -0.53 1.00 3.67 -745.11 -2.73 -1.73 16 3 C 0.03 -0.10 9.32 127.69 1.19 1.09 16 4 C 0.13 0.10 4.65 38.47 0.18 0.28 16 5 C -0.11 -0.52 5.28 -19.78 -0.10 -0.63 16 6 C -0.06 -0.30 2.29 71.24 0.16 -0.14 16 7 O -0.54 -3.27 12.65 -148.98 -1.89 -5.15 16 8 Si 0.77 5.31 30.17 68.60 2.07 7.38 16 9 C -0.06 -0.41 8.19 22.50 0.18 -0.22 16 10 C -0.15 -0.73 5.88 -20.07 -0.12 -0.84 16 11 C 0.56 4.71 7.76 86.69 0.67 5.38 16 12 O -0.57 -9.51 16.34 -4.01 -0.07 -9.58 16 13 N -0.70 -1.62 5.02 -466.27 -2.34 -3.96 16 14 C 0.15 0.42 4.86 86.38 0.42 0.84 16 15 C -0.05 0.12 0.65 -52.40 -0.03 0.09 16 16 C -0.07 0.11 4.85 -19.86 -0.10 0.01 16 17 C -0.12 0.43 9.05 22.27 0.20 0.63 16 18 C -0.12 0.31 10.05 22.27 0.22 0.53 16 19 C -0.14 0.07 10.05 22.27 0.22 0.30 16 20 C -0.13 -0.10 10.05 22.27 0.22 0.12 16 21 C -0.13 -0.11 9.23 22.27 0.21 0.09 16 22 C -0.12 0.66 5.87 31.12 0.18 0.84 16 23 C 0.08 -0.36 5.28 31.12 0.16 -0.20 16 24 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 25 O -0.57 0.67 11.58 -148.98 -1.72 -1.06 16 26 C -0.15 0.63 6.92 31.12 0.22 0.84 16 27 C -0.06 0.09 9.53 22.50 0.21 0.31 16 28 C -0.15 0.35 8.57 22.36 0.19 0.54 16 29 H 0.07 -0.37 7.84 -2.39 -0.02 -0.39 16 30 H 0.04 -0.30 7.08 -2.39 -0.02 -0.32 16 31 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 32 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H 0.06 -0.11 8.12 -2.39 -0.02 -0.13 16 34 H 0.04 -0.26 7.46 -2.39 -0.02 -0.28 16 35 H 0.08 0.41 7.77 -2.39 -0.02 0.39 16 36 H 0.37 0.53 8.06 -74.06 -0.60 -0.06 16 37 H -0.28 -2.95 7.11 99.48 0.71 -2.24 16 38 H -0.28 -3.35 7.11 99.48 0.71 -2.64 16 39 H 0.14 1.08 4.70 -2.91 -0.01 1.07 16 40 H 0.41 -1.26 5.91 -92.71 -0.55 -1.81 16 41 H 0.05 0.31 7.80 -2.38 -0.02 0.29 16 42 H 0.08 0.53 6.06 -2.38 -0.01 0.51 16 43 H 0.14 -1.19 6.42 -2.91 -0.02 -1.21 16 44 H 0.14 -0.88 8.06 -2.91 -0.02 -0.90 16 45 H 0.13 -0.43 8.06 -2.91 -0.02 -0.46 16 46 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 47 H 0.12 0.04 8.06 -2.91 -0.02 0.01 16 48 H 0.08 -0.30 7.36 -2.39 -0.02 -0.32 16 49 H 0.12 -1.03 6.81 -2.38 -0.02 -1.04 16 50 H 0.40 -3.22 9.12 -74.06 -0.68 -3.90 16 51 H 0.10 -0.55 8.10 -2.39 -0.02 -0.57 16 52 H 0.08 -0.25 8.10 -2.39 -0.02 -0.27 16 53 H 0.15 -1.18 6.39 -2.91 -0.02 -1.20 16 54 H 0.15 -1.07 7.01 -2.91 -0.02 -1.09 16 Total: 0.00 -19.95 427.93 -1.83 -21.78 By element: Atomic # 1 Polarization: -17.78 SS G_CDS: -0.83 Total: -18.61 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.68 Total: 10.92 kcal Atomic # 7 Polarization: -0.62 SS G_CDS: -5.08 Total: -5.69 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -3.68 Total: -15.78 kcal Atomic # 14 Polarization: 5.31 SS G_CDS: 2.07 Total: 7.38 kcal Total: -19.95 -1.83 -21.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13422196.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.440 kcal (2) G-P(sol) polarization free energy of solvation -19.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds