Wall clock time and date at job start Sat Mar 6 2021 23:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.47203 * 2 1 4 4 C 1.50696 * 109.47203 * 120.00154 * 2 1 3 5 5 C 1.34186 * 125.43492 * 65.36118 * 4 2 1 6 6 C 1.47026 * 105.94825 * 180.14598 * 5 4 2 7 7 C 1.47380 * 127.18607 * 179.83092 * 6 5 4 8 8 O 1.21611 * 120.00304 * 359.70920 * 7 6 5 9 9 N 1.34779 * 119.99597 * 179.70646 * 7 6 5 10 10 C 1.46499 * 119.99628 * 180.27352 * 9 7 6 11 11 C 1.53005 * 109.46993 * 174.55661 * 10 9 7 12 12 C 1.50702 * 112.84743 * 73.15187 * 11 10 9 13 13 C 1.38236 * 119.99814 * 245.77411 * 12 11 10 14 14 C 1.38237 * 119.99610 * 179.81593 * 13 12 11 15 15 C 1.38232 * 120.00018 * 0.41248 * 14 13 12 16 16 C 1.38234 * 119.99988 * 359.81884 * 15 14 13 17 17 C 1.38230 * 119.99842 * 66.05272 * 12 11 10 18 18 C 1.53781 * 113.61400 * 301.95888 * 11 10 9 19 19 C 1.53780 * 87.08068 * 270.88347 * 18 11 10 20 20 H 1.09001 * 113.61418 * 220.01926 * 19 18 11 21 21 O 1.42901 * 113.61702 * 89.11494 * 19 18 11 22 22 C 1.53777 * 113.61270 * 204.46149 * 11 10 9 23 23 C 1.36407 * 105.61675 * 359.57075 * 6 5 4 24 24 O 1.33651 * 108.40184 * 0.26127 * 23 6 5 25 25 H 0.96700 * 113.99771 * 300.00395 * 1 2 3 26 26 H 1.09005 * 109.47083 * 240.00588 * 2 1 3 27 27 H 1.48501 * 109.99986 * 300.00126 * 3 2 1 28 28 H 1.48497 * 109.99687 * 61.32001 * 3 2 1 29 29 H 1.07991 * 127.02722 * 359.97438 * 5 4 2 30 30 H 0.96999 * 120.00116 * 0.02562 * 9 7 6 31 31 H 1.08997 * 109.47660 * 294.55770 * 10 9 7 32 32 H 1.09005 * 109.46986 * 54.55836 * 10 9 7 33 33 H 1.07996 * 119.99937 * 0.02562 * 13 12 11 34 34 H 1.08000 * 120.00074 * 180.21096 * 14 13 12 35 35 H 1.07996 * 120.00201 * 179.79210 * 15 14 13 36 36 H 1.08010 * 120.00063 * 179.97438 * 16 15 14 37 37 H 1.07998 * 120.00071 * 359.97156 * 17 12 11 38 38 H 1.09000 * 113.61376 * 25.42909 * 18 11 10 39 39 H 1.08997 * 113.61805 * 156.33295 * 18 11 10 40 40 H 0.96696 * 114.00115 * 180.02562 * 21 19 18 41 41 H 1.09007 * 113.61243 * 203.66517 * 22 11 10 42 42 H 1.08997 * 113.61628 * 334.55995 * 22 11 10 43 43 H 1.08005 * 125.80027 * 180.25637 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7610 -2.0138 1.5003 6 6 2.4127 -2.2463 2.7975 7 6 2.5008 -3.5194 3.5347 8 8 1.9943 -4.5248 3.0746 9 7 3.1427 -3.5695 4.7187 10 6 3.2354 -4.8363 5.4486 11 6 4.1221 -4.6508 6.6816 12 6 3.4490 -3.8583 7.7725 13 6 3.9397 -2.6156 8.1273 14 6 3.3199 -1.8871 9.1253 15 6 2.2147 -2.4048 9.7743 16 6 1.7269 -3.6495 9.4227 17 6 2.3444 -4.3765 8.4221 18 6 5.5421 -4.1614 6.3513 19 6 5.9378 -5.6419 6.2237 20 1 6.9173 -5.8699 6.6441 21 8 5.7604 -6.1706 4.9080 22 6 4.7711 -5.9545 7.1755 23 6 2.9238 -1.0387 3.1734 24 8 2.6261 -0.1419 2.2282 25 1 -0.3933 0.4418 0.7650 26 1 1.7924 -0.5138 -0.8901 27 1 1.5615 2.4680 -1.2085 28 1 1.5879 2.4585 1.2242 29 1 1.2474 -2.7424 0.8907 30 1 3.5464 -2.7675 5.0858 31 1 2.2393 -5.1494 5.7612 32 1 3.6690 -5.5981 4.8006 33 1 4.8052 -2.2126 7.6225 34 1 3.7012 -0.9147 9.4003 35 1 1.7325 -1.8371 10.5563 36 1 0.8635 -4.0543 9.9300 37 1 1.9634 -5.3491 8.1476 38 1 5.6066 -3.6098 5.4134 39 1 6.0309 -3.6486 7.1796 40 1 6.0073 -7.1015 4.8216 41 1 5.0492 -5.9319 8.2293 42 1 4.2132 -6.8504 6.9031 43 1 3.4753 -0.8409 4.0807 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13154426_13456056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:58 Heat of formation + Delta-G solvation = -35.830487 kcal Electronic energy + Delta-G solvation = -28135.960482 eV Core-core repulsion = 24115.709139 eV Total energy + Delta-G solvation = -4020.251344 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.67054 -41.94694 -40.00481 -39.35877 -38.12364 -36.42190 -34.95838 -33.84126 -32.06931 -31.86764 -31.74410 -28.74695 -27.12564 -26.60240 -25.20030 -23.98979 -23.27696 -22.43460 -22.21844 -20.86256 -20.03814 -19.25805 -18.72393 -17.87359 -17.80846 -17.50628 -17.26223 -16.78748 -16.55536 -16.19524 -15.97525 -15.87341 -15.66266 -15.54051 -15.29705 -14.61512 -14.47428 -14.25443 -14.12045 -14.06874 -13.88749 -13.58074 -13.50437 -13.29821 -13.12778 -12.93442 -12.80937 -12.33290 -12.06664 -11.97336 -11.71556 -11.37664 -10.97117 -10.85009 -10.80783 -10.71195 -9.97542 -9.89252 -9.75451 -9.68563 -4.99359 0.29390 0.35500 0.41711 0.94904 1.13767 1.49669 1.73615 1.93123 2.13930 2.47017 2.75480 2.96828 3.15696 3.25230 3.39664 3.43022 3.58421 3.65253 3.67385 3.84011 4.00302 4.01619 4.04400 4.15955 4.27322 4.33669 4.45037 4.50056 4.54087 4.58508 4.62792 4.63450 4.68136 4.82311 4.83156 4.94058 4.97331 5.04402 5.07587 5.14786 5.27176 5.45204 5.50815 5.56518 5.60084 5.86699 6.01062 6.24773 6.54373 6.59604 7.32208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.520 6.520 2 C -0.035 4.035 3 Si 0.704 3.296 4 C -0.058 4.058 5 C -0.122 4.122 6 C -0.234 4.234 7 C 0.588 3.412 8 O -0.532 6.532 9 N -0.720 5.720 10 C 0.147 3.853 11 C -0.052 4.052 12 C -0.069 4.069 13 C -0.122 4.122 14 C -0.117 4.117 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.128 4.128 19 C 0.080 3.920 20 H 0.072 0.928 21 O -0.546 6.546 22 C -0.151 4.151 23 C 0.030 3.970 24 O -0.166 6.166 25 H 0.380 0.620 26 H 0.138 0.862 27 H -0.249 1.249 28 H -0.256 1.256 29 H 0.162 0.838 30 H 0.395 0.605 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.383 0.617 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 1.933 4.164 6.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.144 4.144 3 Si 0.603 3.397 4 C -0.106 4.106 5 C -0.142 4.142 6 C -0.238 4.238 7 C 0.375 3.625 8 O -0.409 6.409 9 N -0.371 5.371 10 C 0.024 3.976 11 C -0.052 4.052 12 C -0.069 4.069 13 C -0.140 4.140 14 C -0.135 4.135 15 C -0.141 4.141 16 C -0.133 4.133 17 C -0.129 4.129 18 C -0.165 4.165 19 C 0.021 3.979 20 H 0.090 0.910 21 O -0.352 6.352 22 C -0.189 4.189 23 C -0.041 4.041 24 O -0.062 6.062 25 H 0.229 0.771 26 H 0.155 0.845 27 H -0.173 1.173 28 H -0.180 1.180 29 H 0.180 0.820 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.231 0.769 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.505 2.621 3.148 6.089 hybrid contribution -0.749 -0.633 1.244 1.584 sum 3.757 1.988 4.392 6.112 Atomic orbital electron populations 1.86678 1.16673 1.80131 1.49202 1.24395 0.84013 1.12267 0.93761 0.94454 0.91285 0.73038 0.80900 1.22660 1.01954 0.93339 0.92659 1.22548 1.01057 0.95279 0.95273 1.21551 1.08901 0.94359 0.99033 1.17197 0.78071 0.87068 0.80158 1.90814 1.46592 1.35648 1.67827 1.45661 1.57636 1.12505 1.21314 1.21221 0.98868 0.86372 0.91152 1.20929 0.93940 0.96942 0.93389 1.19603 0.95907 0.94741 0.96684 1.21058 1.00270 0.94362 0.98268 1.21173 0.96063 0.99881 0.96342 1.21212 0.96824 0.96019 0.99999 1.21197 0.99829 0.94914 0.97402 1.20986 0.95561 1.00058 0.96299 1.23239 0.94598 0.95828 1.02843 1.22624 0.96742 0.95093 0.83447 0.90973 1.86504 1.89309 1.31104 1.28266 1.23683 0.97878 0.96810 1.00550 1.24425 0.99675 0.86804 0.93184 1.83683 1.57237 1.38891 1.26429 0.77132 0.84469 1.17348 1.18020 0.82049 0.77060 0.91549 0.88479 0.85899 0.85961 0.86063 0.85980 0.86138 0.89952 0.87984 0.76872 0.88566 0.90102 0.77189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.56 12.88 -35.23 -0.45 -1.01 16 2 C -0.04 0.01 2.97 36.00 0.11 0.12 16 3 Si 0.70 -0.79 32.09 -169.99 -5.46 -6.24 16 4 C -0.06 -0.06 6.18 -35.74 -0.22 -0.28 16 5 C -0.12 -0.34 10.90 -37.45 -0.41 -0.74 16 6 C -0.23 -0.53 6.31 -103.28 -0.65 -1.19 16 7 C 0.59 2.34 7.81 -12.54 -0.10 2.24 16 8 O -0.53 -4.37 16.98 5.27 0.09 -4.28 16 9 N -0.72 -0.57 5.04 -61.39 -0.31 -0.88 16 10 C 0.15 0.14 4.87 -4.04 -0.02 0.12 16 11 C -0.05 0.07 0.64 -154.85 -0.10 -0.03 16 12 C -0.07 0.05 4.85 -104.62 -0.51 -0.46 16 13 C -0.12 0.16 9.05 -39.58 -0.36 -0.20 16 14 C -0.12 0.10 10.05 -39.58 -0.40 -0.30 16 15 C -0.12 0.03 10.05 -39.58 -0.40 -0.37 16 16 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 17 C -0.11 -0.01 9.23 -39.59 -0.37 -0.37 16 18 C -0.13 0.28 5.88 -25.92 -0.15 0.13 16 19 C 0.08 -0.16 5.28 -25.92 -0.14 -0.30 16 20 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 21 O -0.55 0.34 11.57 -35.23 -0.41 -0.07 16 22 C -0.15 0.31 6.92 -25.92 -0.18 0.13 16 23 C 0.03 -0.02 11.61 30.07 0.35 0.33 16 24 O -0.17 -0.04 8.90 7.66 0.07 0.02 16 25 H 0.38 -0.67 8.70 45.56 0.40 -0.27 16 26 H 0.14 -0.22 7.96 -51.93 -0.41 -0.63 16 27 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 28 H -0.26 -0.35 7.11 56.52 0.40 0.05 16 29 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.40 -0.72 6.94 -40.82 -0.28 -1.00 16 31 H 0.07 0.14 7.80 -51.93 -0.41 -0.27 16 32 H 0.10 0.25 6.04 -51.93 -0.31 -0.06 16 33 H 0.12 -0.40 6.41 -52.49 -0.34 -0.74 16 34 H 0.12 -0.30 8.06 -52.49 -0.42 -0.72 16 35 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 36 H 0.12 -0.14 8.06 -52.48 -0.42 -0.57 16 37 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 38 H 0.08 -0.13 7.40 -51.93 -0.38 -0.52 16 39 H 0.10 -0.35 6.79 -51.93 -0.35 -0.70 16 40 H 0.38 -1.60 9.12 45.56 0.42 -1.18 16 41 H 0.10 -0.23 8.10 -51.93 -0.42 -0.65 16 42 H 0.08 -0.16 8.10 -51.93 -0.42 -0.58 16 43 H 0.21 -1.06 7.47 -52.48 -0.39 -1.45 16 LS Contribution 363.60 15.07 5.48 5.48 Total: 0.00 -9.90 363.60 -9.57 -19.47 By element: Atomic # 1 Polarization: -6.29 SS G_CDS: -4.64 Total: -10.93 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.94 Total: -1.56 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: -0.31 Total: -0.88 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.70 Total: -5.33 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: -5.46 Total: -6.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -9.90 -9.57 -19.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13456056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.365 kcal (2) G-P(sol) polarization free energy of solvation -9.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds