Wall clock time and date at job start Sat Mar 6 2021 23:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.47203 * 2 1 4 4 C 1.50696 * 109.47203 * 120.00154 * 2 1 3 5 5 C 1.34186 * 125.43492 * 65.36118 * 4 2 1 6 6 C 1.47026 * 105.94825 * 180.14598 * 5 4 2 7 7 C 1.47380 * 127.18607 * 179.83092 * 6 5 4 8 8 O 1.21611 * 120.00304 * 359.70920 * 7 6 5 9 9 N 1.34779 * 119.99597 * 179.70646 * 7 6 5 10 10 C 1.46499 * 119.99628 * 180.27352 * 9 7 6 11 11 C 1.53005 * 109.46993 * 174.55661 * 10 9 7 12 12 C 1.50702 * 112.84743 * 73.15187 * 11 10 9 13 13 C 1.38236 * 119.99814 * 245.77411 * 12 11 10 14 14 C 1.38237 * 119.99610 * 179.81593 * 13 12 11 15 15 C 1.38232 * 120.00018 * 0.41248 * 14 13 12 16 16 C 1.38234 * 119.99988 * 359.81884 * 15 14 13 17 17 C 1.38230 * 119.99842 * 66.05272 * 12 11 10 18 18 C 1.53781 * 113.61400 * 301.95888 * 11 10 9 19 19 C 1.53780 * 87.08068 * 270.88347 * 18 11 10 20 20 H 1.09001 * 113.61418 * 220.01926 * 19 18 11 21 21 O 1.42901 * 113.61702 * 89.11494 * 19 18 11 22 22 C 1.53777 * 113.61270 * 204.46149 * 11 10 9 23 23 C 1.36407 * 105.61675 * 359.57075 * 6 5 4 24 24 O 1.33651 * 108.40184 * 0.26127 * 23 6 5 25 25 H 0.96700 * 113.99771 * 300.00395 * 1 2 3 26 26 H 1.09005 * 109.47083 * 240.00588 * 2 1 3 27 27 H 1.48501 * 109.99986 * 300.00126 * 3 2 1 28 28 H 1.48497 * 109.99687 * 61.32001 * 3 2 1 29 29 H 1.07991 * 127.02722 * 359.97438 * 5 4 2 30 30 H 0.96999 * 120.00116 * 0.02562 * 9 7 6 31 31 H 1.08997 * 109.47660 * 294.55770 * 10 9 7 32 32 H 1.09005 * 109.46986 * 54.55836 * 10 9 7 33 33 H 1.07996 * 119.99937 * 0.02562 * 13 12 11 34 34 H 1.08000 * 120.00074 * 180.21096 * 14 13 12 35 35 H 1.07996 * 120.00201 * 179.79210 * 15 14 13 36 36 H 1.08010 * 120.00063 * 179.97438 * 16 15 14 37 37 H 1.07998 * 120.00071 * 359.97156 * 17 12 11 38 38 H 1.09000 * 113.61376 * 25.42909 * 18 11 10 39 39 H 1.08997 * 113.61805 * 156.33295 * 18 11 10 40 40 H 0.96696 * 114.00115 * 180.02562 * 21 19 18 41 41 H 1.09007 * 113.61243 * 203.66517 * 22 11 10 42 42 H 1.08997 * 113.61628 * 334.55995 * 22 11 10 43 43 H 1.08005 * 125.80027 * 180.25637 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7610 -2.0138 1.5003 6 6 2.4127 -2.2463 2.7975 7 6 2.5008 -3.5194 3.5347 8 8 1.9943 -4.5248 3.0746 9 7 3.1427 -3.5695 4.7187 10 6 3.2354 -4.8363 5.4486 11 6 4.1221 -4.6508 6.6816 12 6 3.4490 -3.8583 7.7725 13 6 3.9397 -2.6156 8.1273 14 6 3.3199 -1.8871 9.1253 15 6 2.2147 -2.4048 9.7743 16 6 1.7269 -3.6495 9.4227 17 6 2.3444 -4.3765 8.4221 18 6 5.5421 -4.1614 6.3513 19 6 5.9378 -5.6419 6.2237 20 1 6.9173 -5.8699 6.6441 21 8 5.7604 -6.1706 4.9080 22 6 4.7711 -5.9545 7.1755 23 6 2.9238 -1.0387 3.1734 24 8 2.6261 -0.1419 2.2282 25 1 -0.3933 0.4418 0.7650 26 1 1.7924 -0.5138 -0.8901 27 1 1.5615 2.4680 -1.2085 28 1 1.5879 2.4585 1.2242 29 1 1.2474 -2.7424 0.8907 30 1 3.5464 -2.7675 5.0858 31 1 2.2393 -5.1494 5.7612 32 1 3.6690 -5.5981 4.8006 33 1 4.8052 -2.2126 7.6225 34 1 3.7012 -0.9147 9.4003 35 1 1.7325 -1.8371 10.5563 36 1 0.8635 -4.0543 9.9300 37 1 1.9634 -5.3491 8.1476 38 1 5.6066 -3.6098 5.4134 39 1 6.0309 -3.6486 7.1796 40 1 6.0073 -7.1015 4.8216 41 1 5.0492 -5.9319 8.2293 42 1 4.2132 -6.8504 6.9031 43 1 3.4753 -0.8409 4.0807 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13154426_13456056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:24:57 Heat of formation + Delta-G solvation = -37.831346 kcal Electronic energy + Delta-G solvation = -28136.047246 eV Core-core repulsion = 24115.709139 eV Total energy + Delta-G solvation = -4020.338107 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.135 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.73880 -41.87935 -40.23828 -39.25758 -38.16162 -36.41759 -35.10935 -33.93967 -32.03680 -31.82149 -31.68190 -28.80330 -26.98255 -26.60724 -25.19689 -24.05151 -23.18311 -22.33292 -22.31296 -21.02882 -19.97909 -19.27197 -18.60236 -17.90192 -17.69610 -17.55641 -17.40030 -16.90407 -16.50618 -16.21821 -16.06054 -15.80467 -15.69998 -15.52962 -15.21049 -14.71034 -14.41533 -14.24046 -14.18425 -14.06112 -13.98129 -13.62742 -13.57047 -13.18437 -13.03476 -12.95734 -12.68932 -12.21359 -12.13907 -11.87824 -11.60250 -11.34773 -11.16297 -10.99782 -10.77680 -10.70634 -10.14123 -9.82436 -9.80041 -9.60692 -4.91352 0.23944 0.43220 0.50093 0.80221 1.17673 1.52024 1.75036 1.94938 2.02339 2.23796 2.84057 3.18004 3.20509 3.37471 3.45169 3.51641 3.55349 3.74984 3.76583 3.91148 4.01218 4.14422 4.16140 4.28987 4.33334 4.42749 4.45005 4.49526 4.54084 4.64527 4.70023 4.76188 4.84268 4.85749 4.89143 5.01077 5.08752 5.11393 5.15569 5.19100 5.22280 5.31607 5.59878 5.65227 5.68113 5.80499 6.11459 6.33725 6.43517 6.88132 7.11779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.047 4.047 3 Si 0.793 3.207 4 C -0.049 4.049 5 C -0.151 4.151 6 C -0.268 4.268 7 C 0.584 3.416 8 O -0.588 6.588 9 N -0.701 5.701 10 C 0.150 3.850 11 C -0.045 4.045 12 C -0.072 4.072 13 C -0.120 4.120 14 C -0.122 4.122 15 C -0.135 4.135 16 C -0.131 4.131 17 C -0.128 4.128 18 C -0.123 4.123 19 C 0.078 3.922 20 H 0.087 0.913 21 O -0.568 6.568 22 C -0.149 4.149 23 C 0.064 3.936 24 O -0.163 6.163 25 H 0.390 0.610 26 H 0.148 0.852 27 H -0.286 1.286 28 H -0.285 1.285 29 H 0.144 0.856 30 H 0.411 0.589 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.395 0.605 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.070 3.771 5.247 9.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.155 4.155 3 Si 0.695 3.305 4 C -0.097 4.097 5 C -0.171 4.171 6 C -0.272 4.272 7 C 0.373 3.627 8 O -0.470 6.470 9 N -0.353 5.353 10 C 0.026 3.974 11 C -0.045 4.045 12 C -0.072 4.072 13 C -0.138 4.138 14 C -0.140 4.140 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.146 4.146 18 C -0.160 4.160 19 C 0.019 3.981 20 H 0.105 0.895 21 O -0.376 6.376 22 C -0.187 4.187 23 C -0.006 4.006 24 O -0.058 6.058 25 H 0.240 0.760 26 H 0.166 0.834 27 H -0.213 1.213 28 H -0.211 1.211 29 H 0.162 0.838 30 H 0.247 0.753 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.140 0.860 40 H 0.245 0.755 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 6.451 4.457 4.265 8.926 hybrid contribution -1.385 -1.208 0.932 2.060 sum 5.066 3.249 5.197 7.951 Atomic orbital electron populations 1.86650 1.17554 1.80601 1.50013 1.24760 0.83478 1.13505 0.93718 0.93430 0.89827 0.70090 0.77106 1.22721 1.01406 0.92627 0.92939 1.22568 1.02341 0.96029 0.96133 1.21481 1.11365 0.94897 0.99462 1.17524 0.77464 0.87031 0.80643 1.90777 1.49227 1.37607 1.69344 1.45515 1.56401 1.13126 1.20222 1.21124 0.98376 0.86055 0.91816 1.20783 0.94005 0.97675 0.92056 1.19665 0.95703 0.95209 0.96669 1.21328 1.00721 0.93733 0.98000 1.21463 0.95710 1.00672 0.96163 1.21445 0.97380 0.95989 1.00515 1.21361 1.00331 0.95470 0.97788 1.21109 0.96334 1.00261 0.96874 1.23298 0.93470 0.95839 1.03388 1.22727 0.97283 0.95259 0.82868 0.89491 1.86471 1.89580 1.32356 1.29226 1.23687 0.97833 0.96199 1.00977 1.25203 0.97065 0.85102 0.93253 1.83719 1.56872 1.38859 1.26381 0.75957 0.83411 1.21326 1.21122 0.83790 0.75251 0.93330 0.90253 0.83447 0.84143 0.85157 0.85632 0.86554 0.90193 0.86025 0.75458 0.87824 0.90780 0.72576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.48 12.88 -148.98 -1.92 -3.40 16 2 C -0.05 0.03 2.97 71.23 0.21 0.24 16 3 Si 0.79 -2.29 32.09 68.60 2.20 -0.09 16 4 C -0.05 -0.10 6.18 24.76 0.15 0.06 16 5 C -0.15 -1.06 10.90 23.65 0.26 -0.80 16 6 C -0.27 -1.36 6.31 -18.99 -0.12 -1.48 16 7 C 0.58 5.57 7.81 86.65 0.68 6.24 16 8 O -0.59 -11.57 16.98 -4.07 -0.07 -11.64 16 9 N -0.70 -1.37 5.04 -466.40 -2.35 -3.73 16 10 C 0.15 0.48 4.87 86.38 0.42 0.90 16 11 C -0.04 0.13 0.64 -52.40 -0.03 0.10 16 12 C -0.07 0.14 4.85 -19.87 -0.10 0.05 16 13 C -0.12 0.55 9.05 22.27 0.20 0.75 16 14 C -0.12 0.41 10.05 22.27 0.22 0.63 16 15 C -0.14 0.13 10.05 22.27 0.22 0.35 16 16 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 17 C -0.13 -0.11 9.23 22.27 0.21 0.09 16 18 C -0.12 0.74 5.88 31.12 0.18 0.92 16 19 C 0.08 -0.37 5.28 31.12 0.16 -0.20 16 20 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 21 O -0.57 0.49 11.57 -148.98 -1.72 -1.24 16 22 C -0.15 0.62 6.92 31.12 0.22 0.84 16 23 C 0.06 -0.22 11.61 67.39 0.78 0.57 16 24 O -0.16 0.17 8.90 4.48 0.04 0.21 16 25 H 0.39 -1.18 8.70 -74.06 -0.64 -1.82 16 26 H 0.15 -0.46 7.96 -2.38 -0.02 -0.48 16 27 H -0.29 -0.94 7.11 99.48 0.71 -0.23 16 28 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 29 H 0.14 1.40 8.06 -2.92 -0.02 1.38 16 30 H 0.41 -2.04 6.94 -92.71 -0.64 -2.68 16 31 H 0.05 0.33 7.80 -2.39 -0.02 0.31 16 32 H 0.08 0.59 6.04 -2.38 -0.01 0.57 16 33 H 0.15 -1.47 6.41 -2.91 -0.02 -1.49 16 34 H 0.14 -1.03 8.06 -2.91 -0.02 -1.06 16 35 H 0.13 -0.47 8.06 -2.91 -0.02 -0.49 16 36 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 37 H 0.12 0.08 8.06 -2.91 -0.02 0.06 16 38 H 0.08 -0.41 7.40 -2.39 -0.02 -0.42 16 39 H 0.12 -1.19 6.79 -2.39 -0.02 -1.20 16 40 H 0.40 -3.04 9.12 -74.06 -0.68 -3.71 16 41 H 0.10 -0.56 8.10 -2.38 -0.02 -0.58 16 42 H 0.07 -0.20 8.10 -2.39 -0.02 -0.22 16 43 H 0.26 -3.63 7.47 -2.91 -0.02 -3.65 16 Total: 0.00 -26.16 363.60 -0.78 -26.94 By element: Atomic # 1 Polarization: -15.60 SS G_CDS: -0.85 Total: -16.45 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 3.89 Total: 9.39 kcal Atomic # 7 Polarization: -1.37 SS G_CDS: -2.35 Total: -3.73 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -3.67 Total: -16.07 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: 2.20 Total: -0.09 kcal Total: -26.16 -0.78 -26.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13154426_13456056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.895 kcal (2) G-P(sol) polarization free energy of solvation -26.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds